-
1
-
-
0343953493
-
Comparative genome analysis reveals extensive conservation of genome organization for Arabidopsis thaliana and Capsella rubella
-
Acarkan, A., Rossberg, M., Koch, M., and Schmidt, R. 2000. Comparative genome analysis reveals extensive conservation of genome organization for Arabidopsis thaliana and Capsella rubella. Plant J. 23: 55-62.
-
(2000)
Plant J.
, vol.23
, pp. 55-62
-
-
Acarkan, A.1
Rossberg, M.2
Koch, M.3
Schmidt, R.4
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0034897709
-
Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution
-
Anisimova, M., Bielawski, J.P., and Yang, Z. 2001. Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution. Mol. Biol. Evol. 18: 1585-1592.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1585-1592
-
-
Anisimova, M.1
Bielawski, J.P.2
Yang, Z.3
-
4
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative
-
Arabidopsis Genome Initiative. 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
5
-
-
0035116038
-
Sequence and analysis of the Arabidopsis genome
-
Bevan, M., Mayer, K., White, O., Eisen, J.A., Preuss, D., Bureau, T., Salzberg, S.L., and Mewes, H.W. 2001. Sequence and analysis of the Arabidopsis genome. Curr. Opin. Plant Biol. 4: 105-110.
-
(2001)
Curr. Opin. Plant Biol.
, vol.4
, pp. 105-110
-
-
Bevan, M.1
Mayer, K.2
White, O.3
Eisen, J.A.4
Preuss, D.5
Bureau, T.6
Salzberg, S.L.7
Mewes, H.W.8
-
6
-
-
0029897488
-
PairWise and SearchWise: Finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames
-
Birney, E., Thompson, J.D., and Gibson, T.J. 1996. PairWise and SearchWise: Finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames. Nucleic Acids Res. 24: 2730-2739.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 2730-2739
-
-
Birney, E.1
Thompson, J.D.2
Gibson, T.J.3
-
7
-
-
0033891353
-
Extensive duplication and reshuffling in the Arabidopsis genome
-
Blanc, G., Barakat, A., Guyot, R., Cooke, R., and Delseny, M. 2000. Extensive duplication and reshuffling in the Arabidopsis genome. Plant Cell 12: 1093-1101.
-
(2000)
Plant Cell
, vol.12
, pp. 1093-1101
-
-
Blanc, G.1
Barakat, A.2
Guyot, R.3
Cooke, R.4
Delseny, M.5
-
8
-
-
0034117544
-
Two classes of genes in plants
-
Carels, N. and Bernardi, G. 2000. Two classes of genes in plants. Genetics 154: 1819-1825.
-
(2000)
Genetics
, vol.154
, pp. 1819-1825
-
-
Carels, N.1
Bernardi, G.2
-
9
-
-
0031680209
-
Phylogenetic utility of the nuclear gene arginine decarboxylase: An example from Brassicaceae
-
Galloway, G.L., Malmberg, R.L., and Price, R.A. 1998. Phylogenetic utility of the nuclear gene arginine decarboxylase: An example from Brassicaceae. Mol. Biol. Evol. 15: 1312-1320.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1312-1320
-
-
Galloway, G.L.1
Malmberg, R.L.2
Price, R.A.3
-
10
-
-
0032229391
-
New fossil flower from the Turonian of New Jersey: Dressiantha bicarpellata gen. et sp. nov. (Capparales)
-
Gandolfo, M.A., Nixon, K.C., and Crepet., W.L. 1998. New fossil flower from the Turonian of New Jersey: Dressiantha bicarpellata gen. et sp. nov. (Capparales). Am. J. Bot. 85: 964-974.
-
(1998)
Am. J. Bot.
, vol.85
, pp. 964-974
-
-
Gandolfo, M.A.1
Nixon, K.C.2
Crepet, W.L.3
-
11
-
-
0030959648
-
DNA sequence evidence for the segmental allotetraploid origin of maize
-
Gaut, B.S. and Doebley, J.F. 1997. DNA sequence evidence for the segmental allotetraploid origin of maize. Proc. Natl. Acad. Sci. 94: 6809-6814.
-
(1997)
Proc. Natl. Acad. Sci.
, vol.94
, pp. 6809-6814
-
-
Gaut, B.S.1
Doebley, J.F.2
-
12
-
-
0028168856
-
A codon-based model of nucleotide substitution for protein-coding DNA sequences
-
Goldman, N. and Yang, Z. 1994. A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 11: 725-736.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 725-736
-
-
Goldman, N.1
Yang, Z.2
-
13
-
-
0034636168
-
Genome organization in dicots: Genome duplication in Arabidopsis and synteny between soybean and Arabidopsis
-
Grant, D., Cregan, P., and Shoemaker, R.C. 2000. Genome organization in dicots: Genome duplication in Arabidopsis and synteny between soybean and Arabidopsis. Proc. Natl. Acad. Sci. 97: 4168-4173.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 4168-4173
-
-
Grant, D.1
Cregan, P.2
Shoemaker, R.C.3
-
14
-
-
0036141943
-
Testing the parsimony test of genome duplications: A counterexample
-
Gu, X. and Huang, W. 2002. Testing the parsimony test of genome duplications: A counterexample. Genome Res. 12: 1-2.
-
(2002)
Genome Res.
, vol.12
, pp. 1-2
-
-
Gu, X.1
Huang, W.2
-
15
-
-
0036613509
-
Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution
-
Gu, X., Wang, Y., and Gu, J. 2002. Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution. Nat. Genet 31: 205-209.
-
(2002)
Nat. Genet
, vol.31
, pp. 205-209
-
-
Gu, X.1
Wang, Y.2
Gu, J.3
-
16
-
-
0036241339
-
Gene loss, silencing and activation in a newly synthesized wheat allotetraploid
-
Kashkush, K., Feldman, M., and Levy, A.A. 2002. Gene loss, silencing and activation in a newly synthesized wheat allotetraploid. Genetics 160: 1651-1659.
-
(2002)
Genetics
, vol.160
, pp. 1651-1659
-
-
Kashkush, K.1
Feldman, M.2
Levy, A.A.3
-
17
-
-
0032694941
-
Molecular systematics and evolution of Arabidopsis and Arabis
-
Koch, M., Bishop, J., and Mitchell-Olds, T. 1999. Molecular systematics and evolution of Arabidopsis and Arabis. Plant Biology 1: 529-537.
-
(1999)
Plant Biology
, vol.1
, pp. 529-537
-
-
Koch, M.1
Bishop, J.2
Mitchell-Olds, T.3
-
18
-
-
0001692896
-
Molecular systematics of the Brassicaceae: Evidence from coding plastidic matK and nuclear Chs sequences
-
Koch, M., Haubold, B., and Mitchell-Olds, T. 2001. Molecular systematics of the Brassicaceae: Evidence from coding plastidic matK and nuclear Chs sequences. Am. J. Bot. 88: 534-544.
-
(2001)
Am. J. Bot.
, vol.88
, pp. 534-544
-
-
Koch, M.1
Haubold, B.2
Mitchell-Olds, T.3
-
19
-
-
0033804889
-
Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)
-
Koch, M.A., Haubold, B., and Mitchell-Olds, T. 2000. Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae). Mol. Biol. Evol. 17: 1483-1498.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1483-1498
-
-
Koch, M.A.1
Haubold, B.2
Mitchell-Olds, T.3
-
20
-
-
0034255126
-
Comparing sequenced segments of the tomato and Arabidopsis genomes: Large-scale duplication followed by selective gene loss creates a network of synteny
-
Ku, H.M., Vision, T., Liu, J., and Tanksley, S.D. 2000. Comparing sequenced segments of the tomato and Arabidopsis genomes: Large-scale duplication followed by selective gene loss creates a network of synteny. Proc. Natl. Acad. Sci. 97: 9121-9126.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 9121-9126
-
-
Ku, H.M.1
Vision, T.2
Liu, J.3
Tanksley, S.D.4
-
21
-
-
0030454609
-
Comparative genome mapping in Brassica
-
Lagercrantz, U. and Lydiate, D.J. 1996. Comparative genome mapping in Brassica. Genetics 144: 1903-1910.
-
(1996)
Genetics
, vol.144
, pp. 1903-1910
-
-
Lagercrantz, U.1
Lydiate, D.J.2
-
22
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander, E.S., Linton, L.M., Birren, B., Nusbaum, C., Zody, M.C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., FitzHugh, W., et al. 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
-
23
-
-
0035980032
-
Gene duplication and evolution
-
Long, M., Thornton, K., Zhang, L., Gaut, B.S., Vision, T.J., Lynch, M., and Conery, J.C. 2001. Gene duplication and evolution. Science 293: 1551a.
-
(2001)
Science
, vol.293
-
-
Long, M.1
Thornton, K.2
Zhang, L.3
Gaut, B.S.4
Vision, T.J.5
Lynch, M.6
Conery, J.C.7
-
24
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch, M. and Conery, J.S. 2000. The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
25
-
-
0036613237
-
Extensive genomic duplication during early chordate evolution
-
McLysaght, A., Hokamp, K., and Wolfe, K.H. 2002. Extensive genomic duplication during early chordate evolution. Nat. Genet. 31: 200-204.
-
(2002)
Nat. Genet.
, vol.31
, pp. 200-204
-
-
McLysaght, A.1
Hokamp, K.2
Wolfe, K.H.3
-
26
-
-
0034500239
-
Polyploid incidence and evolution
-
Otto, S.P. and Whitton, J. 2000. Polyploid incidence and evolution. Annu. Rev. Genet. 34: 401-437.
-
(2000)
Annu. Rev. Genet.
, vol.34
, pp. 401-437
-
-
Otto, S.P.1
Whitton, J.2
-
27
-
-
0033784032
-
Comparative genomics of plant chromosomes
-
Paterson, A.H., Bowers, J.E., Burow, M.D., Draye, X., Elsik, C.G., Jiang, C.X., Katsar, C.S., Lan, T.H., Lin, Y.R., Ming, R., et al. 2000. Comparative genomics of plant chromosomes. Plant Cell 12: 1523-1540.
-
(2000)
Plant Cell
, vol.12
, pp. 1523-1540
-
-
Paterson, A.H.1
Bowers, J.E.2
Burow, M.D.3
Draye, X.4
Elsik, C.G.5
Jiang, C.X.6
Katsar, C.S.7
Lan, T.H.8
Lin, Y.R.9
Ming, R.10
-
28
-
-
0033965855
-
The TIGR gene indices: Reconstruction and representation of expressed gene sequences
-
Quackenbush, J., Liang, F., Holt, I., Pertea, G., and Upton, J. 2000. The TIGR gene indices: Reconstruction and representation of expressed gene sequences. Nucleic Acids Res. 28: 141-145.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 141-145
-
-
Quackenbush, J.1
Liang, F.2
Holt, I.3
Pertea, G.4
Upton, J.5
-
29
-
-
0035546156
-
Gene and genome duplication
-
Sankoff, D. 2001. Gene and genome duplication. Curr. Opin. Genet. Dev. 11: 681-684.
-
(2001)
Curr. Opin. Genet. Dev.
, vol.11
, pp. 681-684
-
-
Sankoff, D.1
-
30
-
-
0037109058
-
The hidden duplication past of Arabidopsis thaliana
-
Simillion, C., Vandepoele, K., Van Montagu, M.C.E., Zabeau, M., and Van de Peer, Y. 2002. The hidden duplication past of Arabidopsis thaliana. Proc. Natl. Acad.Sci. 99: 13627-13632.
-
(2002)
Proc. Natl. Acad.Sci.
, vol.99
, pp. 13627-13632
-
-
Simillion, C.1
Vandepoele, K.2
Van Montagu, M.C.E.3
Zabeau, M.4
Van de Peer, Y.5
-
31
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith, T.F. and Waterman, M.S. 1981. Identification of common molecular subsequences. J. Mol. Biol. 147: 195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
32
-
-
0033604619
-
Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology
-
Soltis, P.S., Soltis, D.E., and Chase, M.W. 1999. Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology. Nature 402: 402-404.
-
(1999)
Nature
, vol.402
, pp. 402-404
-
-
Soltis, P.S.1
Soltis, D.E.2
Chase, M.W.3
-
33
-
-
0035895505
-
The sequence of the human genome
-
Venter, J.C., Adams, M.D., Myers, E.W., Li, P.W., Mural, R.J., Sutton, G.G., Smith, H.O., Yandell, M., Evans, C.A., Holt, R.A., et al. 2001. The sequence of the human genome. Science 291: 1304-1351.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
Smith, H.O.7
Yandell, M.8
Evans, C.A.9
Holt, R.A.10
-
34
-
-
0034671866
-
The origins of genomic duplications in Arabidopsis
-
Vision, T.J., Brown, D.G., and Tanksley, S.D. 2000. The origins of genomic duplications in Arabidopsis. Science 290: 2114-2117.
-
(2000)
Science
, vol.290
, pp. 2114-2117
-
-
Vision, T.J.1
Brown, D.G.2
Tanksley, S.D.3
-
35
-
-
0033974956
-
Genome evolution in polyploids
-
Wendel, J.F. 2000. Genome evolution in polyploids. Plant Mol. Biol. 42: 225-249.
-
(2000)
Plant Mol. Biol.
, vol.42
, pp. 225-249
-
-
Wendel, J.F.1
-
36
-
-
0035344021
-
Yesterday's polyploids and the mystery of diploidization
-
Wolfe, K.H. 2001. Yesterday's polyploids and the mystery of diploidization. Nat. Rev. Genet. 2: 333-341.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 333-341
-
-
Wolfe, K.H.1
-
37
-
-
0030947344
-
Molecular evidence for an ancient duplication of the entire yeast genome
-
Wolfe, K.H. and Shields, D.C. 1997. Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387: 708-713.
-
(1997)
Nature
, vol.387
, pp. 708-713
-
-
Wolfe, K.H.1
Shields, D.C.2
-
38
-
-
0036078076
-
Compositional gradients in Gramineae genes
-
Wong, G.K., Wang, J., Tao, L., Tan, J., Zhang, J., Passey, D.A., and Yu, J. 2002a. Compositional gradients in Gramineae genes. Genome Res. 12: 851-856.
-
(2002)
Genome Res.
, vol.12
, pp. 851-856
-
-
Wong, G.K.1
Wang, J.2
Tao, L.3
Tan, J.4
Zhang, J.5
Passey, D.A.6
Yu, J.7
-
39
-
-
0037047141
-
Gene order evolution and paleopolyploidy in hemiascomycete yeasts
-
Wong, S., Butler, G., and Wolfe, K.H. 2002b. Gene order evolution and paleopolyploidy in hemiascomycete yeasts. Proc. Natl. Acad. Sci. 99: 9272-9277.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 9272-9277
-
-
Wong, S.1
Butler, G.2
Wolfe, K.H.3
-
40
-
-
0029901640
-
Analysis of compositionally biased regions in sequence databases
-
Wootton, J.C. and Federhen, S. 1996. Analysis of compositionally biased regions in sequence databases. Methods Enzymol. 266: 554-571.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 554-571
-
-
Wootton, J.C.1
Federhen, S.2
-
41
-
-
0032954807
-
Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages
-
Yang, Y.W., Lai, K.N., Tai, P.Y., and Li, W.H. 1999. Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages. J. Mol. Evol. 48: 597-604.
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 597-604
-
-
Yang, Y.W.1
Lai, K.N.2
Tai, P.Y.3
Li, W.H.4
-
42
-
-
0032028624
-
On the best evolutionary rate for phylogenetic analysis
-
Yang, Z. 1998. On the best evolutionary rate for phylogenetic analysis. Syst. Biol. 47: 125-133.
-
(1998)
Syst. Biol.
, vol.47
, pp. 125-133
-
-
Yang, Z.1
-
44
-
-
0036726239
-
Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana
-
Zhang, L., Vision, T.J., and Gaut, B.S. 2002. Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana. Mol. Biol. Evol. 19: 1464-1473.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1464-1473
-
-
Zhang, L.1
Vision, T.J.2
Gaut, B.S.3
|