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Volumn 17, Issue 6, 2005, Pages 1658-1673

Antiquity of microRNAs and their targets in land plants

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL ORGANS; GENES; PLANTS (BOTANY); TISSUE;

EID: 22144457368     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.105.032185     Document Type: Article
Times cited : (505)

References (60)
  • 1
    • 4243111895 scopus 로고    scopus 로고
    • Modulation of floral development by a gibberellin-regulated microRNA
    • Achard, P., Herr, A., Baulcombe, D.C., and Harberd, N.P. (2004). Modulation of floral development by a gibberellin-regulated microRNA. Development 131, 3357-3365.
    • (2004) Development , vol.131 , pp. 3357-3365
    • Achard, P.1    Herr, A.2    Baulcombe, D.C.3    Harberd, N.P.4
  • 3
    • 9644272448 scopus 로고    scopus 로고
    • Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
    • Allen, E., Xie, Z., Gustafson, A.M., Sung, G.H., Spatafora, J.W., and Carrington, J.C. (2004). Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat. Genet. 36, 1282-1290.
    • (2004) Nat. Genet. , vol.36 , pp. 1282-1290
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Sung, G.H.4    Spatafora, J.W.5    Carrington, J.C.6
  • 4
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros, V. (2004). The functions of animal microRNAs. Nature 431, 350-355.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 5
    • 0242361521 scopus 로고    scopus 로고
    • Regulation of flowering time and floral organ identity by a microRNA and its apetala2-like target genes
    • Aukerman, M.J., and Sakai, H. (2003). Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes. Plant Cell 15, 2730-2741.
    • (2003) Plant Cell , vol.15 , pp. 2730-2741
    • Aukerman, M.J.1    Sakai, H.2
  • 6
    • 7044285911 scopus 로고    scopus 로고
    • Probing microRNAs with microarrays: Tissue specificity and functional inference
    • Babak, T., Zhang, W., Morris, Q., Blencowe, B.J., and Hughes, T.R. (2004). Probing microRNAs with microarrays: Tissue specificity and functional inference. RNA 10, 1813-1819.
    • (2004) RNA , vol.10 , pp. 1813-1819
    • Babak, T.1    Zhang, W.2    Morris, Q.3    Blencowe, B.J.4    Hughes, T.R.5
  • 7
    • 13944263944 scopus 로고    scopus 로고
    • The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in Arabidopsis
    • Baker, C.C., Sieber, P., Wellmer, F., and Meyerowitz, E.M. (2005). The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in Arabidopsis. Curr Biol 15, 303-315.
    • (2005) Curr Biol , vol.15 , pp. 303-315
    • Baker, C.C.1    Sieber, P.2    Wellmer, F.3    Meyerowitz, E.M.4
  • 8
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel, D.P. (2004). MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116, 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 9
    • 13944260434 scopus 로고    scopus 로고
    • Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes
    • Baskerville, S., and Bartel, D.P. (2005). Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. RNA 11, 241-247.
    • (2005) RNA , vol.11 , pp. 241-247
    • Baskerville, S.1    Bartel, D.P.2
  • 10
    • 3843089328 scopus 로고    scopus 로고
    • Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes
    • Bonnet, E., Wuyts, J., Rouze, P., and Van de Peer, Y. (2004). Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes. Proc. Natl. Acad. Sci. USA 101, 11511-11516.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 11511-11516
    • Bonnet, E.1    Wuyts, J.2    Rouze, P.3    Van De Peer, Y.4
  • 11
    • 0037418839 scopus 로고    scopus 로고
    • Bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila
    • Brennecke, J., Hipfner, D.R., Stark, A., Russell, R.B., and Cohen, S.M. (2003). bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila. Cell 113, 25-36.
    • (2003) Cell , vol.113 , pp. 25-36
    • Brennecke, J.1    Hipfner, D.R.2    Stark, A.3    Russell, R.B.4    Cohen, S.M.5
  • 14
    • 51249169259 scopus 로고
    • A simple and efficient method for isolating RNA from pine trees
    • Chang, S., Puryear, J., and Cairney, J. (1993). A simple and efficient method for isolating RNA from pine trees. Plant Mol. Biol. Rep. 11, 113-116.
    • (1993) Plant Mol. Biol. Rep. , vol.11 , pp. 113-116
    • Chang, S.1    Puryear, J.2    Cairney, J.3
  • 15
    • 1642366133 scopus 로고    scopus 로고
    • A microRNA as a translational repressor of apetala2 in Arabidopsis flower development
    • Chen, X. (2004). A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science 303, 2022-2025.
    • (2004) Science , vol.303 , pp. 2022-2025
    • Chen, X.1
  • 16
    • 4444383585 scopus 로고    scopus 로고
    • MicroRNA regulation of gene expression in plants
    • Dugas, D.V., and Bartel, B. (2004). MicroRNA regulation of gene expression in plants. Curr. Opin. Plant Biol. 7, 512-520.
    • (2004) Curr. Opin. Plant Biol. , vol.7 , pp. 512-520
    • Dugas, D.V.1    Bartel, B.2
  • 18
    • 1842484780 scopus 로고    scopus 로고
    • Gene regulation: Ancient microRNA target sequences in plants
    • Floyd, S.K., and Bowman, J.L. (2004). Gene regulation: Ancient microRNA target sequences in plants. Nature 428, 485-486.
    • (2004) Nature , vol.428 , pp. 485-486
    • Floyd, S.K.1    Bowman, J.L.2
  • 20
    • 2942672580 scopus 로고    scopus 로고
    • Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    • Jones-Rhoades, M.W., and Bartel, D.P. (2004). Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol. Cell 14, 787-799.
    • (2004) Mol. Cell , vol.14 , pp. 787-799
    • Jones-Rhoades, M.W.1    Bartel, D.P.2
  • 21
    • 1542317414 scopus 로고    scopus 로고
    • MicroRNA-mediated repression of rolled leaf1 specifies maize leaf polarity
    • Juarez, M.T., Kui, J.S., Thomas, J., Heller, B.A., and Timmermans, M.C. (2004). microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity. Nature 428, 84-88.
    • (2004) Nature , vol.428 , pp. 84-88
    • Juarez, M.T.1    Kui, J.S.2    Thomas, J.3    Heller, B.A.4    Timmermans, M.C.5
  • 22
    • 0037320231 scopus 로고    scopus 로고
    • P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA function
    • Kasschau, K.D., Xie, Z., Allen, E., Llave, C., Chapman, E.J., Krizan, K.A., and Carrington, J.C. (2003). P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA function. Dev. Cell 4, 205-217.
    • (2003) Dev. Cell , vol.4 , pp. 205-217
    • Kasschau, K.D.1    Xie, Z.2    Allen, E.3    Llave, C.4    Chapman, E.J.5    Krizan, K.A.6    Carrington, J.C.7
  • 23
    • 1542377275 scopus 로고    scopus 로고
    • Spatially restricted microRNA directs leaf polarity through argonaute1
    • Kidner, C.A., and Martienssen, R.A. (2004). Spatially restricted microRNA directs leaf polarity through ARGONAUTE1. Nature 428, 81-84.
    • (2004) Nature , vol.428 , pp. 81-84
    • Kidner, C.A.1    Martienssen, R.A.2
  • 25
    • 0141631876 scopus 로고    scopus 로고
    • A microRNA array reveals extensive regulation of microRNAs during brain development
    • Krichevsky, A.M., King, K.S., Donahue, C.P., Khrapko, K., and Kosik, K.S. (2003). A microRNA array reveals extensive regulation of microRNAs during brain development. RNA 9, 1274-1281.
    • (2003) RNA , vol.9 , pp. 1274-1281
    • Krichevsky, A.M.1    King, K.S.2    Donahue, C.P.3    Khrapko, K.4    Kosik, K.S.5
  • 26
    • 0035955361 scopus 로고    scopus 로고
    • An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    • Lau, N.C., Lim, L.P., Weinstein, E.G., and Bartel, D.P. (2001). An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294, 858-862.
    • (2001) Science , vol.294 , pp. 858-862
    • Lau, N.C.1    Lim, L.P.2    Weinstein, E.G.3    Bartel, D.P.4
  • 27
    • 4444275405 scopus 로고    scopus 로고
    • MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems
    • Laufs, P., Peaucelle, A., Morin, H., and Traas, J. (2004). MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems. Development 131, 4311-4322.
    • (2004) Development , vol.131 , pp. 4311-4322
    • Laufs, P.1    Peaucelle, A.2    Morin, H.3    Traas, J.4
  • 28
    • 19744383402 scopus 로고    scopus 로고
    • An oligonucleotide microarray for microRNA expression analysis based on labeling RNA with quantum dot and nanogold probe
    • Liang, R.Q., Li, W., Li, Y., Tan, C.Y., Li, J.X., Jin, Y.X., and Ruan, K.C. (2005). An oligonucleotide microarray for microRNA expression analysis based on labeling RNA with quantum dot and nanogold probe. Nucleic Acids Res. 33, e17.
    • (2005) Nucleic Acids Res. , vol.33
    • Liang, R.Q.1    Li, W.2    Li, Y.3    Tan, C.Y.4    Li, J.X.5    Jin, Y.X.6    Ruan, K.C.7
  • 31
    • 3042752769 scopus 로고    scopus 로고
    • An oligonucleotide microchip for genome-wide microRNA profiling in human and mouse tissues
    • Liu, C.G., et al. (2004). An oligonucleotide microchip for genome-wide microRNA profiling in human and mouse tissues. Proc. Natl. Acad. Sci. USA 101, 9740-9744.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 9740-9744
    • Liu, C.G.1
  • 32
    • 0037144457 scopus 로고    scopus 로고
    • Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA
    • Llave, C., Xie, Z., Kasschau, K.D., and Carrington, J.C. (2002). Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 297, 2053-2056.
    • (2002) Science , vol.297 , pp. 2053-2056
    • Llave, C.1    Xie, Z.2    Kasschau, K.D.3    Carrington, J.C.4
  • 33
    • 24944493388 scopus 로고    scopus 로고
    • MicroRNA-directed regulation of arabidopsis auxin response factor17 is essential for proper development and modulates expression of early auxin response genes
    • Mallory, A.C., Bartel, D.P., and Bartel, B. (2005). MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Plant Cell 17, 1360-1375.
    • (2005) Plant Cell , vol.17 , pp. 1360-1375
    • Mallory, A.C.1    Bartel, D.P.2    Bartel, B.3
  • 34
    • 2942697259 scopus 로고    scopus 로고
    • MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs
    • Mallory, A.C., Dugas, D.V., Bartel, D.P., and Bartel, B. (2004a). MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs. Curr. Biol. 14, 1035-1046.
    • (2004) Curr. Biol. , vol.14 , pp. 1035-1046
    • Mallory, A.C.1    Dugas, D.V.2    Bartel, D.P.3    Bartel, B.4
  • 36
    • 4444363152 scopus 로고    scopus 로고
    • MicroRNA control of phabulosa in leaf development: Importance of pairing to the microRNA 5′ region
    • Mallory, A.C., Reinhart, B.J., Jones-Rhoades, M.W., Tang, G., Zamore, P.D., Barton, M.K., and Bartel, D.P. (2004b). MicroRNA control of PHABULOSA in leaf development: Importance of pairing to the microRNA 5′ region. EMBO J. 23, 3356-3364.
    • (2004) EMBO J. , vol.23 , pp. 3356-3364
    • Mallory, A.C.1    Reinhart, B.J.2    Jones-Rhoades, M.W.3    Tang, G.4    Zamore, P.D.5    Barton, M.K.6    Bartel, D.P.7
  • 37
    • 0035822096 scopus 로고    scopus 로고
    • Role of phabulosa and phavoluta in determining radial patterning in shoots
    • McConnell, J.R., Emery, J., Eshed, Y., Bao, N., Bowman, J., and Barton, M.K. (2001). Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots. Nature 411, 709-713.
    • (2001) Nature , vol.411 , pp. 709-713
    • McConnell, J.R.1    Emery, J.2    Eshed, Y.3    Bao, N.4    Bowman, J.5    Barton, M.K.6
  • 38
    • 3142709494 scopus 로고    scopus 로고
    • MicroRNA-directed cleavage of Nicotiana sylvestris PHAVOLUTA mRNA regulates the vascular cambium and structure of apical meristems
    • McHale, N.A., and Koning, R.E. (2004). MicroRNA-directed cleavage of Nicotiana sylvestris PHAVOLUTA mRNA regulates the vascular cambium and structure of apical meristems. Plant Cell 16, 1730-1740.
    • (2004) Plant Cell , vol.16 , pp. 1730-1740
    • McHale, N.A.1    Koning, R.E.2
  • 39
    • 20444485252 scopus 로고    scopus 로고
    • The Arabidopsis GAMYB-Like genes, MYB33 and MYB65, are microRNA-regulated genes that redundantly facilitate anther development
    • Millar, A.A., and Gubler, F. (2005). The Arabidopsis GAMYB-Like genes, MYB33 and MYB65, are microRNA-regulated genes that redundantly facilitate anther development. Plant Cell 17, 705-721.
    • (2005) Plant Cell , vol.17 , pp. 705-721
    • Millar, A.A.1    Gubler, F.2
  • 43
    • 4444234497 scopus 로고    scopus 로고
    • In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA
    • Parizotto, E.A., Dunoyer, P., Rahm, N., Himber, C., and Voinnet, O. (2004). In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA. Genes Dev. 18, 2237-2242.
    • (2004) Genes Dev. , vol.18 , pp. 2237-2242
    • Parizotto, E.A.1    Dunoyer, P.2    Rahm, N.3    Himber, C.4    Voinnet, O.5
  • 44
    • 0037015239 scopus 로고    scopus 로고
    • Carpel factory, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana
    • Park, W., Li, J., Song, R., Messing, J., and Chen, X. (2002). CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr. Biol. 12, 1484-1495.
    • (2002) Curr. Biol. , vol.12 , pp. 1484-1495
    • Park, W.1    Li, J.2    Song, R.3    Messing, J.4    Chen, X.5
  • 47
    • 0036834508 scopus 로고    scopus 로고
    • Dicer-like1: Blind men and elephants in Arabidopsis development
    • Schauer, S.E., Jacobsen, S.E., Meinke, D.W., and Ray, A. (2002). DICER-LIKE1: Blind men and elephants in Arabidopsis development. Trends Plant Sci. 7, 487-491.
    • (2002) Trends Plant Sci. , vol.7 , pp. 487-491
    • Schauer, S.E.1    Jacobsen, S.E.2    Meinke, D.W.3    Ray, A.4
  • 50
    • 1842640535 scopus 로고    scopus 로고
    • Analysis of gymnosperm two-AP2-domain-containing genes
    • Shigyo, M., and Ito, M. (2004). Analysis of gymnosperm two-AP2-domain-containing genes. Dev. Genes Evol. 214, 105-114.
    • (2004) Dev. Genes Evol. , vol.214 , pp. 105-114
    • Shigyo, M.1    Ito, M.2
  • 51
    • 16344383409 scopus 로고    scopus 로고
    • Development of a micro-array to detect human and mouse microRNAs and characterization of expression in human organs
    • Sun, Y., Koo, S., White, N., Peralta, E., Esau, C., Dean, N.M., and Perera, R.J. (2004). Development of a micro-array to detect human and mouse microRNAs and characterization of expression in human organs. Nucleic Acids Res. 32, e188.
    • (2004) Nucleic Acids Res. , vol.32
    • Sun, Y.1    Koo, S.2    White, N.3    Peralta, E.4    Esau, C.5    Dean, N.M.6    Perera, R.J.7
  • 52
    • 22144464033 scopus 로고    scopus 로고
    • Cloning and characterization of microRNAs from rice
    • Sunkar, R., Girke, T., Jain, P.K., and Zhu, J.-K. (2005). Cloning and characterization of microRNAs from rice. Plant Cell 17, 1397-1411.
    • (2005) Plant Cell , vol.17 , pp. 1397-1411
    • Sunkar, R.1    Girke, T.2    Jain, P.K.3    Zhu, J.-K.4
  • 53
    • 4043074968 scopus 로고    scopus 로고
    • Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
    • Sunkar, R., and Zhu, J.K. (2004). Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 16, 2001-2019.
    • (2004) Plant Cell , vol.16 , pp. 2001-2019
    • Sunkar, R.1    Zhu, J.K.2
  • 54
    • 0037224921 scopus 로고    scopus 로고
    • A biochemical framework for RNA silencing in plants
    • Tang, G., Reinhart, B.J., Bartel, D.P., and Zamore, P.D. (2003). A biochemical framework for RNA silencing in plants. Genes Dev. 17, 49-63.
    • (2003) Genes Dev. , vol.17 , pp. 49-63
    • Tang, G.1    Reinhart, B.J.2    Bartel, D.P.3    Zamore, P.D.4
  • 55
    • 13944262052 scopus 로고    scopus 로고
    • A custom microarray platform for analysis of microRNA gene expression
    • Thomson, J.M., Parker, J., Perou, C.M., and Hammond, S.M. (2004). A custom microarray platform for analysis of microRNA gene expression. Nat. Methods 1, 47-53.
    • (2004) Nat. Methods , vol.1 , pp. 47-53
    • Thomson, J.M.1    Parker, J.2    Perou, C.M.3    Hammond, S.M.4
  • 56
    • 2442650370 scopus 로고    scopus 로고
    • The action of argonaute1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development
    • Vaucheret, H., Vazquez, F., Crete, P., and Bartel, D.P. (2004). The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev. 18, 1187-1197.
    • (2004) Genes Dev. , vol.18 , pp. 1187-1197
    • Vaucheret, H.1    Vazquez, F.2    Crete, P.3    Bartel, D.P.4
  • 58
    • 12744262431 scopus 로고    scopus 로고
    • Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
    • Wang, X.J., Reyes, J.L., Chua, N.H., and Gaasterland, T. (2004). Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets. Genome Biol. 5, R65.
    • (2004) Genome Biol. , vol.5
    • Wang, X.J.1    Reyes, J.L.2    Chua, N.H.3    Gaasterland, T.4
  • 60
    • 2342449276 scopus 로고    scopus 로고
    • Amphivasal vascular bundle 1, a gain-of-function mutation of the IFL1/REV gene, is associated with alterations in the polarity of leaves, stems and carpels
    • Zhong, R., and Ye, Z.H. (2004). Amphivasal vascular bundle 1, a gain-of-function mutation of the IFL1/REV gene, is associated with alterations in the polarity of leaves, stems and carpels. Plant Cell Physiol. 45, 369-385.
    • (2004) Plant Cell Physiol. , vol.45 , pp. 369-385
    • Zhong, R.1    Ye, Z.H.2


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