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Volumn 7, Issue 3, 1997, Pages 399-406

Searching for regulatory elements in human noncoding sequences

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 0030927867     PISSN: 0959440X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0959-440X(97)80058-9     Document Type: Article
Times cited : (193)

References (48)
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    • MATRIX SEARCH 1.0: A computer program that scans DNA sequences for transcriptional elements using a database of weight matrices
    • These two papers [13,14] present software tools to search for transcription factor binding sites using libraries of weight matrices. These libraries are constructed using data from TRANSFAC and TFD. The use of weight matrices instead of IUPAC code based consensus sequences significantly improves the accuracy of predictions. of special interest
    • Chen QK, Hertz GZ, Stormo GD. MATRIX SEARCH 1.0: a computer program that scans DNA sequences for transcriptional elements using a database of weight matrices. Comput Appl Biosci. 11:1995;563-566 These two papers [13,14] present software tools to search for transcription factor binding sites using libraries of weight matrices. These libraries are constructed using data from TRANSFAC and TFD. The use of weight matrices instead of IUPAC code based consensus sequences significantly improves the accuracy of predictions. of special interest.
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    • SIGNAL SCAN 4.0 - additional databases and sequence formats
    • This software tool searches for transcription factor binding sites using TFD and TRANSFAC. In addition to using IUPAC code based consensus sequences, the current version now includes the MATRIX SEARCH software described above [14]. of special interest
    • Prestridge DS. SIGNAL SCAN 4.0 - additional databases and sequence formats. Comput Appl Biosci. 12:1996;157-160 This software tool searches for transcription factor binding sites using TFD and TRANSFAC. In addition to using IUPAC code based consensus sequences, the current version now includes the MATRIX SEARCH software described above [14]. of special interest.
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