-
1
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel DP: MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116(2):281-297.
-
(2004)
Cell
, vol.116
, Issue.2
, pp. 281-297
-
-
Bartel, D.P.1
-
2
-
-
0038299558
-
Role of microRNAs in plant and animal development
-
Carrington JC, Ambros V: Role of microRNAs in plant and animal development. Science 2003, 301(5631):336-338.
-
(2003)
Science
, vol.301
, Issue.5631
, pp. 336-338
-
-
Carrington, J.C.1
Ambros, V.2
-
3
-
-
4644309196
-
The functions of animal microRNAs
-
Ambros V: The functions of animal microRNAs. Nature 2004, 431(7006):350-355.
-
(2004)
Nature
, vol.431
, Issue.7006
, pp. 350-355
-
-
Ambros, V.1
-
4
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
Lee RC, Feinbaum RL, Ambros V: The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 1993, 75(5):843-854.
-
(1993)
Cell
, vol.75
, Issue.5
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
5
-
-
0037144457
-
Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA
-
Llave C, Xie ZX, Kasschau K.D, Carrington JC: Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 2002, 297(5589):2053-2056.
-
(2002)
Science
, vol.297
, Issue.5589
, pp. 2053-2056
-
-
Llave, C.1
Xie, Z.X.2
Kasschau, K.D.3
Carrington, J.C.4
-
6
-
-
0036645146
-
Micro-RNAs in plants
-
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP: Micro-RNAs in plants. Genes Dev 2002, 16(13):1616-1626.
-
(2002)
Genes Dev
, vol.16
, Issue.13
, pp. 1616-1626
-
-
Reinhart, B.J.1
Weinstein, E.G.2
Rhoades, M.W.3
Bartel, B.4
Bartel, D.P.5
-
7
-
-
0035955361
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
-
Lau NC, Lim LP, Weinstein EG, Bartel DP: An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 2001. 294(5543):858-862.
-
(2001)
Science
, vol.294
, Issue.5543
, pp. 858-862
-
-
Lau, N.C.1
Lim, L.P.2
Weinstein, E.G.3
Bartel, D.P.4
-
8
-
-
10744225153
-
Asymmetry in the assembly of the RNAi enzyme complex
-
Schwarz DS, Hutvagner G, Du T, Xu ZS, Aronin N, Zamore PD: Asymmetry in the assembly of the RNAi enzyme complex. Cell 2003, 115(2): 199-208.
-
(2003)
Cell
, vol.115
, Issue.2
, pp. 199-208
-
-
Schwarz, D.S.1
Hutvagner, G.2
Du, T.3
Xu, Z.S.4
Aronin, N.5
Zamore, P.D.6
-
9
-
-
33646137364
-
The diversity of RNA silencing pathways in plants
-
Brodersen P, Voinnet O: The diversity of RNA silencing pathways in plants. Trends Genet 2006, 22(5):268-280.
-
(2006)
Trends Genet
, vol.22
, Issue.5
, pp. 268-280
-
-
Brodersen, P.1
Voinnet, O.2
-
10
-
-
26944441255
-
Dicing and slicing: The core machinery of the RNA interference pathway
-
Hammond SM: Dicing and slicing: the core machinery of the RNA interference pathway. FEBS Lett 2005, 579(26):5822-5829.
-
(2005)
FEBS Lett
, vol.579
, Issue.26
, pp. 5822-5829
-
-
Hammond, S.M.1
-
11
-
-
18344369543
-
MicroRNA biogenesis: Coordinated cropping and dicing
-
Kim VN: MicroRNA biogenesis: coordinated cropping and dicing. Nat Rev Mol Cell tool 2005, 6(5):376-385.
-
(2005)
Nat Rev Mol Cell tool
, vol.6
, Issue.5
, pp. 376-385
-
-
Kim, V.N.1
-
12
-
-
14644393684
-
Perspective: Machines for RNAi
-
Tomari Y, Zamore PD: Perspective: machines for RNAi. Genes Dev 2005, 19(5):517-529.
-
(2005)
Genes Dev
, vol.19
, Issue.5
, pp. 517-529
-
-
Tomari, Y.1
Zamore, P.D.2
-
13
-
-
9344235449
-
Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs
-
Cai X, Hagedorn CH, Cullen BR: Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs. RNA 2004. 10(12): 1957-1966.
-
(2004)
RNA
, vol.10
, Issue.12
, pp. 1957-1966
-
-
Cai, X.1
Hagedorn, C.H.2
Cullen, B.R.3
-
14
-
-
8144225486
-
MicroRNA genes are transcribed by RNA polymerase II
-
Lee Y, Kim M, Han J, Yeom KH, Lee S, Baek SH, Kim VN: MicroRNA genes are transcribed by RNA polymerase II. EMBO J 2004, 23(20):4051-4060.
-
(2004)
EMBO J
, vol.23
, Issue.20
, pp. 4051-4060
-
-
Lee, Y.1
Kim, M.2
Han, J.3
Yeom, K.H.4
Lee, S.5
Baek, S.H.6
Kim, V.N.7
-
15
-
-
29144528351
-
Expression of Arabidopsis MIRNA genes
-
Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC: Expression of Arabidopsis MIRNA genes. Plant Physiol 2005, 138(4):2145-2154.
-
(2005)
Plant Physiol
, vol.138
, Issue.4
, pp. 2145-2154
-
-
Xie, Z.1
Allen, E.2
Fahlgren, N.3
Calamar, A.4
Givan, S.A.5
Carrington, J.C.6
-
16
-
-
0035955374
-
Identification of novel genes coding for small expressed RNAs
-
Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T: Identification of novel genes coding for small expressed RNAs. Science 2001, 294(5543):853-858.
-
(2001)
Science
, vol.294
, Issue.5543
, pp. 853-858
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Lendeckel, W.3
Tuschl, T.4
-
17
-
-
33745068088
-
Novel miRNAs and intermediates of miRNA biogenesis from moss
-
Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T: Novel miRNAs and intermediates of miRNA biogenesis from moss. Plant J 2006, 47:25-37.
-
(2006)
Plant J
, vol.47
, pp. 25-37
-
-
Talmor-Neiman, M.1
Stav, R.2
Frank, W.3
Voss, B.4
Arazi, T.5
-
18
-
-
33646830110
-
Conservation and divergence of plant microRNA genes
-
Zhang B, Pan X, Cannon CH, Cobb GP, Anderson TA: Conservation and divergence of plant microRNA genes. Plant J 2006, 46(2):243-259.
-
(2006)
Plant J
, vol.46
, Issue.2
, pp. 243-259
-
-
Zhang, B.1
Pan, X.2
Cannon, C.H.3
Cobb, G.P.4
Anderson, T.A.5
-
19
-
-
9144224451
-
Processing of primary microRNAs by the Microprocessor complex
-
Denli AM, Tops BB, Plasterk RH, Ketting RF, Hannon GJ: Processing of primary microRNAs by the Microprocessor complex. Nature 2004, 432(7014):231 -235.
-
(2004)
Nature
, vol.432
, Issue.7014
, pp. 231-235
-
-
Denli, A.M.1
Tops, B.B.2
Plasterk, R.H.3
Ketting, R.F.4
Hannon, G.J.5
-
20
-
-
9144225636
-
The Microprocessor complex medi-ates the genesis of microRNAs
-
Gregory RI, Yan KP, Amuthan G, Chendrimada T, Doratotaj B, Cooch N, Shiekhattar R: The Microprocessor complex medi-ates the genesis of microRNAs. Nature 2004, 432(7014):235-240.
-
(2004)
Nature
, vol.432
, Issue.7014
, pp. 235-240
-
-
Gregory, R.I.1
Yan, K.P.2
Amuthan, G.3
Chendrimada, T.4
Doratotaj, B.5
Cooch, N.6
Shiekhattar, R.7
-
21
-
-
10644234841
-
The DroshaDGCR8 complex in primary microRNA processing
-
Han J. Lee Y, Yeom KH, Kirn YK. Jin H, Kirn VN: The DroshaDGCR8 complex in primary microRNA processing. Genes Dev 2004, 18(24):3016-3027.
-
(2004)
Genes Dev
, vol.18
, Issue.24
, pp. 3016-3027
-
-
Han, J.1
Lee, Y.2
Yeom, K.H.3
Kirn, Y.K.4
Jin, H.5
Kirn, V.N.6
-
22
-
-
0347361541
-
Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs
-
Yi R, Qin Y, Macara IG, Cullen BR: Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs. Genes Dev 2003, 17(24):3011-3016.
-
(2003)
Genes Dev
, vol.17
, Issue.24
, pp. 3011-3016
-
-
Yi, R.1
Qin, Y.2
Macara, I.G.3
Cullen, B.R.4
-
23
-
-
0035800521
-
A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA
-
Hutvagner G, McLachlan J, Pasquinelli AE, Balint E, Tuschl T, Zamore PD: A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science 2001, 293(5531):834- 838.
-
(2001)
Science
, vol.293
, Issue.5531
, pp. 834-838
-
-
Hutvagner, G.1
McLachlan, J.2
Pasquinelli, A.E.3
Balint, E.4
Tuschl, T.5
Zamore, P.D.6
-
24
-
-
0035887005
-
Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans
-
Ketting RF, Fischer SE, Bernstein E, Sijen T, Hannon GJ, Plasterk RH: Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans. Genes Dev 2001, 15(20):2654-2659.
-
(2001)
Genes Dev
, vol.15
, Issue.20
, pp. 2654-2659
-
-
Ketting, R.F.1
Fischer, S.E.2
Bernstein, E.3
Sijen, T.4
Hannon, G.J.5
Plasterk, R.H.6
-
25
-
-
14844339653
-
Nuclear processing and export of microRNAs in Arabidopsis
-
Park MY, Wu G, Gonzalez-Sulser A, Vaucheret H, Poethig RS: Nuclear processing and export of microRNAs in Arabidopsis. Proc Natl Acad Sci USA 2005, 102(10):3691 -3696.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.10
, pp. 3691-3696
-
-
Park, M.Y.1
Wu, G.2
Gonzalez-Sulser, A.3
Vaucheret, H.4
Poethig, R.S.5
-
27
-
-
3843089328
-
Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes
-
Bonnet E, Wuyts J, Rouze P, Van de Peer Y: Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes. Proc Natl Acad Sci USA 2004, 101(31):11511-11516.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.31
, pp. 11511-11516
-
-
Bonnet, E.1
Wuyts, J.2
Rouze, P.3
Van de Peer, Y.4
-
28
-
-
0035955366
-
An extensive class of small RNAs in Caenorhabditis elegans
-
Lee RC, Ambros V: An extensive class of small RNAs in Caenorhabditis elegans. Science 2001, 294(5543):862-864.
-
(2001)
Science
, vol.294
, Issue.5543
, pp. 862-864
-
-
Lee, R.C.1
Ambros, V.2
-
29
-
-
0037447334
-
The microRNAs of Caenorhabditis elegans
-
Lim LP, Lau MC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP: The microRNAs of Caenorhabditis elegans. Genes Dev 2003, 17(8):991 -1008.
-
(2003)
Genes Dev
, vol.17
, Issue.8
, pp. 991-1008
-
-
Lim, L.P.1
Lau, M.C.2
Weinstein, E.G.3
Abdelhakim, A.4
Yekta, S.5
Rhoades, M.W.6
Burge, C.B.7
Bartel, D.P.8
-
30
-
-
11844262661
-
-
Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E: Phylogenetic shadowing and computational identification of human microRNA genes. Cell 2005, 120(1):21-24.
-
Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E: Phylogenetic shadowing and computational identification of human microRNA genes. Cell 2005, 120(1):21-24.
-
-
-
-
31
-
-
15244358503
-
Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
-
Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M: Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 2005, 434(7031):338-345.
-
(2005)
Nature
, vol.434
, Issue.7031
, pp. 338-345
-
-
Xie, X.1
Lu, J.2
Kulbokas, E.J.3
Golub, T.R.4
Mootha, V.5
Lindblad-Toh, K.6
Lander, E.S.7
Kellis, M.8
-
32
-
-
22844440427
-
Identification of hundreds of conserved and nonconserved human microRNAs
-
Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, et al.: Identification of hundreds of conserved and nonconserved human microRNAs. Nat Genet 2005, 37(7):766-770.
-
(2005)
Nat Genet
, vol.37
, Issue.7
, pp. 766-770
-
-
Bentwich, I.1
Avniel, A.2
Karov, Y.3
Aharonov, R.4
Gilad, S.5
Barad, O.6
Barzilai, A.7
Einat, P.8
Einav, U.9
Meiri, E.10
-
33
-
-
26944443861
-
Identification and characterization of small RNAs involved in RNA silencing
-
Aravin A, Tuschl T: Identification and characterization of small RNAs involved in RNA silencing. FEBS Lett 2005, 579(26):5830-5840.
-
(2005)
FEBS Lett
, vol.579
, Issue.26
, pp. 5830-5840
-
-
Aravin, A.1
Tuschl, T.2
-
35
-
-
32144438833
-
Identification of plant microRNA homologs
-
Dezulian T, Remmert M, Palatnik JF, Weigel D, Huson DH: Identification of plant microRNA homologs. Bioinformatics 2006, 22(3):359-360.
-
(2006)
Bioinformatics
, vol.22
, Issue.3
, pp. 359-360
-
-
Dezulian, T.1
Remmert, M.2
Palatnik, J.F.3
Weigel, D.4
Huson, D.H.5
-
36
-
-
1842484780
-
Gene regulation: Ancient microRNA target sequences in plants
-
Floyd SK, Bowman JL: Gene regulation: ancient microRNA target sequences in plants. Nature 2004, 428(6982):485-486.
-
(2004)
Nature
, vol.428
, Issue.6982
, pp. 485-486
-
-
Floyd, S.K.1
Bowman, J.L.2
-
37
-
-
22144457368
-
Antiquity of microRNAs and their targets in land plants
-
Axtell MJ, Bartel DP: Antiquity of microRNAs and their targets in land plants. Plant Cell 2005, 17(6): 1658-1673.
-
(2005)
Plant Cell
, vol.17
, Issue.6
, pp. 1658-1673
-
-
Axtell, M.J.1
Bartel, D.P.2
-
38
-
-
32444442577
-
Molecular evolution of the AP2 subfamily
-
Shigyo M, Hasebe M, Ito M: Molecular evolution of the AP2 subfamily. Gene 2006, 366(2):256-265.
-
(2006)
Gene
, vol.366
, Issue.2
, pp. 256-265
-
-
Shigyo, M.1
Hasebe, M.2
Ito, M.3
-
39
-
-
33644772270
-
The expansion of the metazoan microRNA repertoire
-
Hertel J, Lindemeyer M, Missal K, Fried C, Tanzer A, Flamm C, Hofacker IL, Stadler PF: The expansion of the metazoan microRNA repertoire. BMC Genomics 2006, 7:25.
-
(2006)
BMC Genomics
, vol.7
, pp. 25
-
-
Hertel, J.1
Lindemeyer, M.2
Missal, K.3
Fried, C.4
Tanzer, A.5
Flamm, C.6
Hofacker, I.L.7
Stadler, P.F.8
-
41
-
-
0038270852
-
Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: Implication for land plant evolution
-
Nishiyama T, Fujita T, Shin IT, Seki M, Nishide H, Uchiyama I, Kamiya A, Carninci P, Hayashizaki Y, Shinozaki K, et al.: Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: implication for land plant evolution. Proc Natl Acad Sci USA 2003, 100(13):8007-8012.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.13
, pp. 8007-8012
-
-
Nishiyama, T.1
Fujita, T.2
Shin, I.T.3
Seki, M.4
Nishide, H.5
Uchiyama, I.6
Kamiya, A.7
Carninci, P.8
Hayashizaki, Y.9
Shinozaki, K.10
-
42
-
-
0036886436
-
Moss transcriptome and beyond
-
Rensing SA, Rombauts S, Van de Peer Y, Reski R: Moss transcriptome and beyond. Trends Plant Sci 2002, 7(12):535-538.
-
(2002)
Trends Plant Sci
, vol.7
, Issue.12
, pp. 535-538
-
-
Rensing, S.A.1
Rombauts, S.2
Van de Peer, Y.3
Reski, R.4
-
43
-
-
0031930234
-
Development, genetics and molecular biology of mosses
-
Reski R: Development, genetics and molecular biology of mosses. Bot Acta 1998, 111:1-15.
-
(1998)
Bot Acta
, vol.111
, pp. 1-15
-
-
Reski, R.1
-
44
-
-
1842584883
-
RNA regulation: A new genetics?
-
MattickJS
-
MattickJS: RNA regulation: a new genetics? Nature reviews 2004, 5(4):316-323.
-
(2004)
Nature reviews
, vol.5
, Issue.4
, pp. 316-323
-
-
-
45
-
-
33746830079
-
Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features
-
Derelle E, Ferraz C, Rombauts S, Rouze P, Worden AZ, Robbens S, Partensky F, Degroeve S, Echeynie S, Cooke R, et al.: Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc Natl Acad Sci USA 2006, 103(31):11647-11652.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.31
, pp. 11647-11652
-
-
Derelle, E.1
Ferraz, C.2
Rombauts, S.3
Rouze, P.4
Worden, A.Z.5
Robbens, S.6
Partensky, F.7
Degroeve, S.8
Echeynie, S.9
Cooke, R.10
-
46
-
-
32944464673
-
Cloning and characterization of micro-RNAs from moss
-
Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC: Cloning and characterization of micro-RNAs from moss. Plant J 2005, 43(6):837-848.
-
(2005)
Plant J
, vol.43
, Issue.6
, pp. 837-848
-
-
Arazi, T.1
Talmor-Neiman, M.2
Stav, R.3
Riese, M.4
Huijser, P.5
Baulcombe, D.C.6
-
47
-
-
33750440526
-
A Two-Hit Trigger for siRNA Biogenesis in Plants
-
Axtell MJ, Jan C, Rajagopalan R, Bartel DP: A Two-Hit Trigger for siRNA Biogenesis in Plants. Cell 2006, 127(3):565-577.
-
(2006)
Cell
, vol.127
, Issue.3
, pp. 565-577
-
-
Axtell, M.J.1
Jan, C.2
Rajagopalan, R.3
Bartel, D.P.4
-
48
-
-
0035115728
-
Gene targeting in Physcomitrella patens
-
Schaefer DG: Gene targeting in Physcomitrella patens. Curr Opm Plant Biol 2001, 4(2): 143-150.
-
(2001)
Curr Opm Plant Biol
, vol.4
, Issue.2
, pp. 143-150
-
-
Schaefer, D.G.1
-
49
-
-
0000351648
-
Physcomitrella and Arabidopsis: The David and Goliath of reverese genetics
-
Reski R: Physcomitrella and Arabidopsis: the David and Goliath of reverese genetics. Trends Plant Sci 1998, 3(6):209-210.
-
(1998)
Trends Plant Sci
, vol.3
, Issue.6
, pp. 209-210
-
-
Reski, R.1
-
50
-
-
20144376094
-
Representation and highquality annotation of the Physcomitrella patens transcriptome demonstrates a high proportion of proteins involved in metabolism in mosses
-
Lang D, Eisinger J, Reski R, Rensing SA: Representation and highquality annotation of the Physcomitrella patens transcriptome demonstrates a high proportion of proteins involved in metabolism in mosses. Plant Biol (Stuttg) 2005, 7(3):238-250.
-
(2005)
Plant Biol (Stuttg)
, vol.7
, Issue.3
, pp. 238-250
-
-
Lang, D.1
Eisinger, J.2
Reski, R.3
Rensing, S.A.4
-
51
-
-
0037782493
-
MicroRNAs: At the root of plant development?
-
Bartel B, Bartel DP: MicroRNAs: at the root of plant development? Plant Physiol 2003, 132(2):709-717.
-
(2003)
Plant Physiol
, vol.132
, Issue.2
, pp. 709-717
-
-
Bartel, B.1
Bartel, D.P.2
-
52
-
-
0033058358
-
Molecular genetics of Physcomitrella
-
Reski R: Molecular genetics of Physcomitrella. Planta 1999, 208:301-309.
-
(1999)
Planta
, vol.208
, pp. 301-309
-
-
Reski, R.1
-
53
-
-
27844495281
-
Identification and characterization of new plant microRNAs using EST analysis
-
Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA: Identification and characterization of new plant microRNAs using EST analysis. Cell Res 2005, 15(5):336-360.
-
(2005)
Cell Res
, vol.15
, Issue.5
, pp. 336-360
-
-
Zhang, B.H.1
Pan, X.P.2
Wang, Q.L.3
Cobb, G.P.4
Anderson, T.A.5
-
54
-
-
32544440797
-
RNAshapes: An integrated RNA analysis package based on abstract shapes
-
Steffen P, Voss B, Rehmsmeier M, Reeder J, Giegerich R: RNAshapes: an integrated RNA analysis package based on abstract shapes, Bioinformatics 2006, 22(4):500-503.
-
(2006)
Bioinformatics
, vol.22
, Issue.4
, pp. 500-503
-
-
Steffen, P.1
Voss, B.2
Rehmsmeier, M.3
Reeder, J.4
Giegerich, R.5
-
55
-
-
34047120988
-
-
miRBase [http://microrna.sanger.ac. uk/]
-
miRBase [http://microrna.sanger.ac. uk/]
-
-
-
-
56
-
-
2942672580
-
Computational identification of plant MicroRNAs and their targets, including a stressinduced miRNA
-
Jones-Rhoades MW, Bartel DP: Computational identification of plant MicroRNAs and their targets, including a stressinduced miRNA. Mol Cell 2004, 14(6):787-799.
-
(2004)
Mol Cell
, vol.14
, Issue.6
, pp. 787-799
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
-
57
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP: Prediction of plant microRNA targets. Cell 2002, 110(4):513-520.
-
(2002)
Cell
, vol.110
, Issue.4
, pp. 513-520
-
-
Rhoades, M.W.1
Reinhart, B.J.2
Lim, L.P.3
Burge, C.B.4
Bartel, B.5
Bartel, D.P.6
-
58
-
-
12744261466
-
Computational prediction of miRNAs in Arabidopsis thaliana
-
Adai A, Johnson C, Mlotshwa S, Archer-Evans S, Manocha V, Vance V, Sundaresan V: Computational prediction of miRNAs in Arabidopsis thaliana. Genome Res 2005, 15(1):78-91.
-
(2005)
Genome Res
, vol.15
, Issue.1
, pp. 78-91
-
-
Adai, A.1
Johnson, C.2
Mlotshwa, S.3
Archer-Evans, S.4
Manocha, V.5
Vance, V.6
Sundaresan, V.7
-
59
-
-
4043074968
-
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
-
Sunkar R, Zhu JK: Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 2004, 16(8):2001-2019.
-
(2004)
Plant Cell
, vol.16
, Issue.8
, pp. 2001-2019
-
-
Sunkar, R.1
Zhu, J.K.2
-
60
-
-
16244398080
-
Specific effects of MicroRNAs on the plant transcriptome
-
Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, Weigel D: Specific effects of MicroRNAs on the plant transcriptome. Dev Cell 2005, 8(4):517-527.
-
(2005)
Dev Cell
, vol.8
, Issue.4
, pp. 517-527
-
-
Schwab, R.1
Palatnik, J.F.2
Riester, M.3
Schommer, C.4
Schmid, M.5
Weigel, D.6
-
61
-
-
4644237189
-
Fast and effective prediction of microRNA/target duplexes
-
Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R: Fast and effective prediction of microRNA/target duplexes. RNA 2004, 10(10):1507-1517.
-
(2004)
RNA
, vol.10
, Issue.10
, pp. 1507-1517
-
-
Rehmsmeier, M.1
Steffen, P.2
Hochsmann, M.3
Giegerich, R.4
-
62
-
-
9644272448
-
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
-
Allen E, Xie Z, Gustafson AM, Sung GH, Spatafora JW, Carrington JC: Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet 2004. 36(12): 1282-1290.
-
(2004)
Nat Genet
, vol.36
, Issue.12
, pp. 1282-1290
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Sung, G.H.4
Spatafora, J.W.5
Carrington, J.C.6
-
63
-
-
33645509923
-
Evolution of Arabidopsis microRNA families through duplication events
-
Maher C, Stein L, Ware D: Evolution of Arabidopsis microRNA families through duplication events. Genome Res 2006, 16(4):510-519.
-
(2006)
Genome Res
, vol.16
, Issue.4
, pp. 510-519
-
-
Maher, C.1
Stein, L.2
Ware, D.3
-
64
-
-
22144464033
-
Cloning and characterization of MicroRNAs from rice
-
Sunkar R, Girke T, Jain PK, Zhu JK: Cloning and characterization of MicroRNAs from rice. Plant Cell 2005, 17(5): 1397-1411.
-
(2005)
Plant Cell
, vol.17
, Issue.5
, pp. 1397-1411
-
-
Sunkar, R.1
Girke, T.2
Jain, P.K.3
Zhu, J.K.4
-
65
-
-
0037199969
-
Functional knockout of the adenosine 5'-phosphosulfate reductase gene in Physcomitrella patens revives an old route of sulfate assimilation
-
Koprivova A, Meyer AJ, Schween G, Herschbach C, Reski R, Kopriva S: Functional knockout of the adenosine 5'-phosphosulfate reductase gene in Physcomitrella patens revives an old route of sulfate assimilation. The Journal of biological chemistry 2002, 277(35):32195-32201.
-
(2002)
The Journal of biological chemistry
, vol.277
, Issue.35
, pp. 32195-32201
-
-
Koprivova, A.1
Meyer, A.J.2
Schween, G.3
Herschbach, C.4
Reski, R.5
Kopriva, S.6
-
66
-
-
33745623128
-
Post- transcriptional regulation of microRNA expression
-
Obernosterer G, Leuschner PJ, Alenius M, Martinez J: Post- transcriptional regulation of microRNA expression. RNA 2006, 12(7):1161-1167.
-
(2006)
RNA
, vol.12
, Issue.7
, pp. 1161-1167
-
-
Obernosterer, G.1
Leuschner, P.J.2
Alenius, M.3
Martinez, J.4
-
67
-
-
33644853907
-
The colorectal microRNAome
-
Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, et al.: The colorectal microRNAome. Proc Natl Acad Sci USA 2006, 103(10):3687-3692.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.10
, pp. 3687-3692
-
-
Cummins, J.M.1
He, Y.2
Leary, R.J.3
Pagliarini, R.4
Diaz Jr, L.A.5
Sjoblom, T.6
Barad, O.7
Bentwich, Z.8
Szafranska, A.E.9
Labourier, E.10
-
68
-
-
0037087780
-
miRNPs: A novel class of ribonucleoproteins containing numerous microRNAs
-
Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L, Rappsilber J, Mann M, Dreyfuss G: miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs. Genes Dev 2002, 16(6):720-728.
-
(2002)
Genes Dev
, vol.16
, Issue.6
, pp. 720-728
-
-
Mourelatos, Z.1
Dostie, J.2
Paushkin, S.3
Sharma, A.4
Charroux, B.5
Abel, L.6
Rappsilber, J.7
Mann, M.8
Dreyfuss, G.9
-
69
-
-
33745827752
-
Duplication and expression analysis of multicopy miRNA gene family members in Arabidopsis and rice
-
Jiang D, Yin C, Yu A, Zhou X, Liang W, Yuan Z, Xu Y, Yu Q, Wen T, Zhang D: Duplication and expression analysis of multicopy miRNA gene family members in Arabidopsis and rice. Cell Res 2006, 16(5):507-518.
-
(2006)
Cell Res
, vol.16
, Issue.5
, pp. 507-518
-
-
Jiang, D.1
Yin, C.2
Yu, A.3
Zhou, X.4
Liang, W.5
Yuan, Z.6
Xu, Y.7
Yu, Q.8
Wen, T.9
Zhang, D.10
-
70
-
-
0001693751
-
Induction of Budding on Chloronemata and Caulonemata of the Moss, Physcomitrella-Patens, Using Isopentenyladenine
-
Reski R, Abel WO: Induction of Budding on Chloronemata and Caulonemata of the Moss, Physcomitrella-Patens, Using Isopentenyladenine. Planta 1985, 165(3):354-358.
-
(1985)
Planta
, vol.165
, Issue.3
, pp. 354-358
-
-
Reski, R.1
Abel, W.O.2
-
71
-
-
2942555318
-
High frequency of phenotypic deviations in Physcomitrella patens plants transformed with a gene-disruption library
-
Egener T, Granado J, Guitton MC, Hohe A, Holtorf H, Lucht JM, Rensing SA, Schlink K, Schulte J, Schween G, et al.: High frequency of phenotypic deviations in Physcomitrella patens plants transformed with a gene-disruption library. BMC Plant Biol 2002, 2:6.
-
(2002)
BMC Plant Biol
, vol.2
, pp. 6
-
-
Egener, T.1
Granado, J.2
Guitton, M.C.3
Hohe, A.4
Holtorf, H.5
Lucht, J.M.6
Rensing, S.A.7
Schlink, K.8
Schulte, J.9
Schween, G.10
-
72
-
-
0035984059
-
Endogenous and silencing-associated small RNAs in plants
-
Llave C, Kasschau KD, Rector MA, Carrington JC: Endogenous and silencing-associated small RNAs in plants. Plant Cell 2002, 14(7): 1605-1619.
-
(2002)
Plant Cell
, vol.14
, Issue.7
, pp. 1605-1619
-
-
Llave, C.1
Kasschau, K.D.2
Rector, M.A.3
Carrington, J.C.4
-
73
-
-
34047116607
-
-
GenBank [http://www.ncbi.nlm.nih.gov/BLAST]
-
-
-
GenBank1
-
74
-
-
0037252684
-
Rfam: An RNA family database
-
Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR: Rfam: an RNA family database. Nucleic Acids Res 2003, 31(1):439-441.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.1
, pp. 439-441
-
-
Griffiths-Jones, S.1
Bateman, A.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
-
75
-
-
33644750115
-
miRBase: MicroRNA sequences, targets and gene nomenclature
-
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ: miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res 2006:D 140-144.
-
(2006)
Nucleic Acids Res
, vol.500
, pp. 140-144
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
76
-
-
84886760357
-
-
NCBI Trace Archive [http://www.ncbi.nlm.nih.gov/Traces/trace. cgi]
-
NCBI Trace Archive
-
-
-
77
-
-
34047101151
-
-
Physcomitrella patens resource cosmoss [http://www.cosmoss.org/ cnt/ miRNA.content].
-
Physcomitrella patens resource cosmoss [http://www.cosmoss.org/ cnt/ miRNA.content].
-
-
-
-
78
-
-
2942672580
-
Computational identification of plant MicroRNAs and their targets, including a stressinduced miRNA
-
Jones-Rhoades MW, Bartel DP: Computational identification of plant MicroRNAs and their targets, including a stressinduced miRNA. Molecular Cell 2004, 14(6):787-799.
-
(2004)
Molecular Cell
, vol.14
, Issue.6
, pp. 787-799
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
-
79
-
-
27744471144
-
Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis
-
Lu SF, Sun YH, Shi R, Clark C, Li LG, Chiang VL: Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell 2005, 17(8):2186-2203.
-
(2005)
Plant Cell
, vol.17
, Issue.8
, pp. 2186-2203
-
-
Lu, S.F.1
Sun, Y.H.2
Shi, R.3
Clark, C.4
Li, L.G.5
Chiang, V.L.6
-
80
-
-
0031452439
-
Protein disulfide isomerase as a regulator of chloroplast translational activation
-
Kim J, Mayfield SP: Protein disulfide isomerase as a regulator of chloroplast translational activation. Science 1997, 278(5345): 1954-1957.
-
(1997)
Science
, vol.278
, Issue.5345
, pp. 1954-1957
-
-
Kim, J.1
Mayfield, S.P.2
|