메뉴 건너뛰기




Volumn 3, Issue , 2008, Pages

Functional insight into Maelstrom in the germline piRNA pathway: A unique domain homologous to the DnaQ-H 3′-5′ exonuclease, its lineage-specific expansion/loss and evolutionarily active site switch

Author keywords

[No Author keywords available]

Indexed keywords

ASCIDIACEA; HEXAPODA; NEMATODA; PROTISTA; TELEOSTEI; VERTEBRATA;

EID: 61349105400     PISSN: None     EISSN: 17456150     Source Type: Journal    
DOI: 10.1186/1745-6150-3-48     Document Type: Article
Times cited : (47)

References (75)
  • 1
    • 33845784376 scopus 로고    scopus 로고
    • The chromatoid body: A germ-cell-specific RNA-processing centre
    • 10.1038/nrm2081 17183363
    • Kotaja N Sassone-Corsi P The chromatoid body: A germ-cell-specific RNA-processing centre Nat Rev Mol Cell Biol 2007, 8(1):85-90. 10.1038/ nrm2081 17183363
    • (2007) Nat Rev Mol Cell Biol , vol.8 , Issue.1 , pp. 85-90
    • Kotaja, N.1    Sassone-Corsi, P.2
  • 2
    • 0031891129 scopus 로고    scopus 로고
    • Germ plasm in Caenorhabditis elegans, Drosophila and Xenopus
    • 10.1046/j.1440-169X.1998.t01-4-00001.x 9563905
    • Ikenishi K Germ plasm in Caenorhabditis elegans, Drosophila and Xenopus Dev Growth Differ 1998, 40(1):1-10. 10.1046/ j.1440-169X.1998.t01-4-00001.x 9563905
    • (1998) Dev Growth Differ , vol.40 , Issue.1 , pp. 1-10
    • Ikenishi, K.1
  • 4
    • 33746502166 scopus 로고    scopus 로고
    • A distinct small RNA pathway silences selfish genetic elements in the germline
    • 10.1126/science.1129333 16809489
    • Vagin VV Sigova A Li C Seitz H Gvozdev V Zamore PD A distinct small RNA pathway silences selfish genetic elements in the germline Science 2006, 313(5785):320-324. 10.1126/science.1129333 16809489
    • (2006) Science , vol.313 , Issue.5785 , pp. 320-324
    • Vagin, V.V.1    Sigova, A.2    Li, C.3    Seitz, H.4    Gvozdev, V.5    Zamore, P.D.6
  • 5
    • 34447558659 scopus 로고    scopus 로고
    • piRNAs-the ancient hunters of genome invaders
    • 10.1101/gad.1567007 17639076
    • Hartig JV Tomari Y Forstemann K piRNAs-the ancient hunters of genome invaders Genes Dev 2007, 21(14):1707-1713. 10.1101/gad.1567007 17639076
    • (2007) Genes Dev , vol.21 , Issue.14 , pp. 1707-1713
    • Hartig, J.V.1    Tomari, Y.2    Forstemann, K.3
  • 7
    • 36749037521 scopus 로고    scopus 로고
    • The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race
    • 10.1126/science.1146484 17975059
    • Aravin AA Hannon GJ Brennecke J The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race Science 2007, 318(5851):761-764. 10.1126/science.1146484 17975059
    • (2007) Science , vol.318 , Issue.5851 , pp. 761-764
    • Aravin, A.A.1    Hannon, G.J.2    Brennecke, J.3
  • 8
    • 38849167412 scopus 로고    scopus 로고
    • Biogenesis and germline functions of piRNAs
    • 10.1242/dev.006486 18032451
    • Klattenhoff C Theurkauf W Biogenesis and germline functions of piRNAs Development 2008, 135(1):3-9. 10.1242/dev.006486 18032451
    • (2008) Development , vol.135 , Issue.1 , pp. 3-9
    • Klattenhoff, C.1    Theurkauf, W.2
  • 9
    • 33947720638 scopus 로고    scopus 로고
    • MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline
    • 10.1016/j.devcel.2007.03.001 17395546
    • Carmell MA Girard A Kant van de HJ Bourc'his D Bestor TH de Rooij DG Hannon GJ MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline Dev Cell 2007, 12(4):503-514. 10.1016/j.devcel.2007.03.001 17395546
    • (2007) Dev Cell , vol.12 , Issue.4 , pp. 503-514
    • Carmell, M.A.1    Girard, A.2    Kant, H.J.3    Bourc'his, D.4    Bestor, T.H.5    de Rooij, D.G.6    Hannon, G.J.7
  • 11
    • 34249849029 scopus 로고    scopus 로고
    • Unique germ-line organelle, nuage, functions to repress selfish genetic elements in Drosophila melanogaster
    • 1871851 17428915 10.1073/pnas.0701920104
    • Lim AK Kai T Unique germ-line organelle, nuage, functions to repress selfish genetic elements in Drosophila melanogaster Proc Natl Acad Sci USA 2007, 104(16):6714-6719. 1871851 17428915 10.1073/pnas.0701920104
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.16 , pp. 6714-6719
    • Lim, A.K.1    Kai, T.2
  • 12
    • 0030723861 scopus 로고    scopus 로고
    • Maelstrom is required for an early step in the establishment of Drosophila oocyte polarity: Posterior localization of grk mRNA
    • 9409682
    • Clegg NJ Frost DM Larkin MK Subrahmanyan L Bryant Z Ruohola-Baker H maelstrom is required for an early step in the establishment of Drosophila oocyte polarity: Posterior localization of grk mRNA Development 1997, 124(22):4661-4671. 9409682
    • (1997) Development , vol.124 , Issue.22 , pp. 4661-4671
    • Clegg, N.J.1    Frost, D.M.2    Larkin, M.K.3    Subrahmanyan, L.4    Bryant, Z.5    Ruohola-Baker, H.6
  • 13
    • 1642588268 scopus 로고    scopus 로고
    • The Drosophila SDE3 homolog armitage is required for oskar mRNA silencing and embryonic axis specification
    • 10.1016/S0092-8674(04)00250-8 15035984
    • Cook HA Koppetsch BS Wu J Theurkauf WE The Drosophila SDE3 homolog armitage is required for oskar mRNA silencing and embryonic axis specification Cell 2004, 116(6):817-829. 10.1016/S0092-8674(04)00250-8 15035984
    • (2004) Cell , vol.116 , Issue.6 , pp. 817-829
    • Cook, H.A.1    Koppetsch, B.S.2    Wu, J.3    Theurkauf, W.E.4
  • 14
    • 33846988304 scopus 로고    scopus 로고
    • Oskar controls morphology of polar granules and nuclear bodies in Drosophila
    • 10.1242/dev.02729 17151014
    • Jones JR Macdonald PM Oskar controls morphology of polar granules and nuclear bodies in Drosophila Development 2007, 134(2):233-236. 10.1242/ dev.02729 17151014
    • (2007) Development , vol.134 , Issue.2 , pp. 233-236
    • Jones, J.R.1    Macdonald, P.M.2
  • 15
    • 33750482567 scopus 로고    scopus 로고
    • Tdrd1/Mtr-1, a tudor-related gene, is essential for male germ-cell differentiation and nuage/germinal granule formation in mice
    • 1635099 17038506 10.1073/pnas.0601878103
    • Chuma S Hosokawa M Kitamura K Kasai S Fujioka M Hiyoshi M Takamune K Noce T Nakatsuji N Tdrd1/Mtr-1, a tudor-related gene, is essential for male germ-cell differentiation and nuage/germinal granule formation in mice Proc Natl Acad Sci USA 2006, 103(43):15894-15899. 1635099 17038506 10.1073/pnas.0601878103
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.43 , pp. 15894-15899
    • Chuma, S.1    Hosokawa, M.2    Kitamura, K.3    Kasai, S.4    Fujioka, M.5    Hiyoshi, M.6    Takamune, K.7    Noce, T.8    Nakatsuji, N.9
  • 16
    • 33947641533 scopus 로고    scopus 로고
    • Cutoff and aubergine mutations result in retrotransposon upregulation and checkpoint activation in Drosophila
    • 1905832 17363252 10.1016/j.cub.2007.02.027
    • Chen Y Pane A Schupbach T Cutoff and aubergine mutations result in retrotransposon upregulation and checkpoint activation in Drosophila Curr Biol 2007, 17(7):637-642. 1905832 17363252 10.1016/j.cub.2007.02.027
    • (2007) Curr Biol , vol.17 , Issue.7 , pp. 637-642
    • Chen, Y.1    Pane, A.2    Schupbach, T.3
  • 17
    • 0042926721 scopus 로고    scopus 로고
    • Dead end, a novel vertebrate germ plasm component, is required for zebrafish primordial germ cell migration and survival
    • 10.1016/S0960-9822(03)00537-2 12932328
    • Weidinger G Stebler J Slanchev K Dumstrei K Wise C Lovell-Badge R Thisse C Thisse B Raz E dead end, a novel vertebrate germ plasm component, is required for zebrafish primordial germ cell migration and survival Curr Biol 2003, 13(16):1429-1434. 10.1016/S0960-9822(03)00537-2 12932328
    • (2003) Curr Biol , vol.13 , Issue.16 , pp. 1429-1434
    • Weidinger, G.1    Stebler, J.2    Slanchev, K.3    Dumstrei, K.4    Wise, C.5    Lovell-Badge, R.6    Thisse, C.7    Thisse, B.8    Raz, E.9
  • 18
    • 34249309547 scopus 로고    scopus 로고
    • Zucchini and squash encode two putative nucleases required for rasiRNA production in the Drosophila germline
    • 1945814 17543859 10.1016/j.devcel.2007.03.022
    • Pane A Wehr K Schupbach T zucchini and squash encode two putative nucleases required for rasiRNA production in the Drosophila germline Dev Cell 2007, 12(6):851-862. 1945814 17543859 10.1016/j.devcel.2007.03.022
    • (2007) Dev Cell , vol.12 , Issue.6 , pp. 851-862
    • Pane, A.1    Wehr, K.2    Schupbach, T.3
  • 19
    • 35548991887 scopus 로고    scopus 로고
    • Gene silencing mechanisms mediated by Aubergine piRNA complexes in Drosophila male gonad
    • 2040086 17872506 10.1261/rna.744307
    • Nishida KM Saito K Mori T Kawamura Y Nagami-Okada T Inagaki S Siomi H Siomi MC Gene silencing mechanisms mediated by Aubergine piRNA complexes in Drosophila male gonad RNA 2007, 13(11):1911-1922. 2040086 17872506 10.1261/rna.744307
    • (2007) RNA , vol.13 , Issue.11 , pp. 1911-1922
    • Nishida, K.M.1    Saito, K.2    Mori, T.3    Kawamura, Y.4    Nagami-Okada, T.5    Inagaki, S.6    Siomi, H.7    Siomi, M.C.8
  • 20
    • 34548784928 scopus 로고    scopus 로고
    • Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline
    • 2018648 17702759 10.1093/nar/gkm576
    • Klenov MS Lavrov SA Stolyarenko AD Ryazansky SS Aravin AA Tuschl T Gvozdev VA Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline Nucleic Acids Res 2007, 35(16):5430-5438. 2018648 17702759 10.1093/nar/gkm576
    • (2007) Nucleic Acids Res , vol.35 , Issue.16 , pp. 5430-5438
    • Klenov, M.S.1    Lavrov, S.A.2    Stolyarenko, A.D.3    Ryazansky, S.S.4    Aravin, A.A.5    Tuschl, T.6    Gvozdev, V.A.7
  • 21
    • 0037352528 scopus 로고    scopus 로고
    • Maelstrom, a Drosophila spindle-class gene, encodes a protein that colocalizes with Vasa and RDE1/AGO1 homolog, Aubergine, in nuage
    • 10.1242/dev.00310 12538514
    • Findley SD Tamanaha M Clegg NJ Ruohola-Baker H Maelstrom, a Drosophila spindle-class gene, encodes a protein that colocalizes with Vasa and RDE1/AGO1 homolog, Aubergine, in nuage Development 2003, 130(5):859-871. 10.1242/dev.00310 12538514
    • (2003) Development , vol.130 , Issue.5 , pp. 859-871
    • Findley, S.D.1    Tamanaha, M.2    Clegg, N.J.3    Ruohola-Baker, H.4
  • 22
    • 0345490960 scopus 로고    scopus 로고
    • The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes
    • 10.1038/nsb1016 14625589
    • Song JJ Liu J Tolia NH Schneiderman J Smith SK Martienssen RA Hannon GJ Joshua-Tor L The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes Nat Struct Biol 2003, 10(12):1026-1032. 10.1038/nsb1016 14625589
    • (2003) Nat Struct Biol , vol.10 , Issue.12 , pp. 1026-1032
    • Song, J.J.1    Liu, J.2    Tolia, N.H.3    Schneiderman, J.4    Smith, S.K.5    Martienssen, R.A.6    Hannon, G.J.7    Joshua-Tor, L.8
  • 23
    • 4444302947 scopus 로고    scopus 로고
    • Crystal structure of Argonaute and its implications for RISC slicer activity
    • 10.1126/science.1102514 15284453
    • Song JJ Smith SK Hannon GJ Joshua-Tor L Crystal structure of Argonaute and its implications for RISC slicer activity Science 2004, 305(5689):1434-1437. 10.1126/science.1102514 15284453
    • (2004) Science , vol.305 , Issue.5689 , pp. 1434-1437
    • Song, J.J.1    Smith, S.K.2    Hannon, G.J.3    Joshua-Tor, L.4
  • 24
    • 11244279683 scopus 로고    scopus 로고
    • Crystal structure of a PIWI protein suggests mechanisms for siRNA recognition and slicer activity
    • 535097 15565169 10.1038/sj.emboj.7600488
    • Parker JS Roe SM Barford D Crystal structure of a PIWI protein suggests mechanisms for siRNA recognition and slicer activity EMBO J 2004, 23(24):4727-4737. 535097 15565169 10.1038/sj.emboj.7600488
    • (2004) EMBO J , vol.23 , Issue.24 , pp. 4727-4737
    • Parker, J.S.1    Roe, S.M.2    Barford, D.3
  • 25
    • 33646017369 scopus 로고    scopus 로고
    • Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa
    • 10.1016/j.cell.2006.01.054 16630817
    • Sengoku T Nureki O Nakamura A Kobayashi S Yokoyama S Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa Cell 2006, 125(2):287-300. 10.1016/j.cell.2006.01.054 16630817
    • (2006) Cell , vol.125 , Issue.2 , pp. 287-300
    • Sengoku, T.1    Nureki, O.2    Nakamura, A.3    Kobayashi, S.4    Yokoyama, S.5
  • 26
    • 18544377013 scopus 로고    scopus 로고
    • The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression
    • 10.1111/j.1742-4658.2005.04653.x 15853797
    • Maris C Dominguez C Allain FH The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression FEBS J 2005, 272(9):2118-2131. 10.1111/j.1742-4658.2005.04653.x 15853797
    • (2005) FEBS J , vol.272 , Issue.9 , pp. 2118-2131
    • Maris, C.1    Dominguez, C.2    Allain, F.H.3
  • 27
    • 0031081575 scopus 로고    scopus 로고
    • Tudor domains in proteins that interact with RNA
    • 10.1016/S0968-0004(96)30049-2 9048482
    • Ponting CP Tudor domains in proteins that interact with RNA Trends Biochem Sci 1997, 22(2):51-52. 10.1016/S0968-0004(96)30049-2 9048482
    • (1997) Trends Biochem Sci , vol.22 , Issue.2 , pp. 51-52
    • Ponting, C.P.1
  • 28
    • 0034845806 scopus 로고    scopus 로고
    • Maelstrom is required to position the MTOC in stage 2-6 Drosophila oocytes
    • 10.1007/s004270000114 11277405
    • Clegg NJ Findley SD Mahowald AP Ruohola-Baker H Maelstrom is required to position the MTOC in stage 2-6 Drosophila oocytes Dev Genes Evol 2001, 211(1):44-48. 10.1007/s004270000114 11277405
    • (2001) Dev Genes Evol , vol.211 , Issue.1 , pp. 44-48
    • Clegg, N.J.1    Findley, S.D.2    Mahowald, A.P.3    Ruohola-Baker, H.4
  • 29
    • 48549092573 scopus 로고    scopus 로고
    • Mouse maelstrom, a component of nuage, is essential for spermatogenesis and transposon repression in meiosis
    • 10.1016/j.devcel.2008.05.015 18694567
    • Soper SF Heijden van der GW Hardiman TC Goodheart M Martin SL de Boer P Bortvin A Mouse maelstrom, a component of nuage, is essential for spermatogenesis and transposon repression in meiosis Dev Cell 2008, 15(2):285-297. 10.1016/j.devcel.2008.05.015 18694567
    • (2008) Dev Cell , vol.15 , Issue.2 , pp. 285-297
    • Soper, S.F.1    Heijden, G.W.2    Hardiman, T.C.3    Goodheart, M.4    Martin, S.L.5    de Boer, P.6    Bortvin, A.7
  • 30
    • 33747877558 scopus 로고    scopus 로고
    • Mouse MAELSTROM: The link between meiotic silencing of unsynapsed chromatin and microRNA pathway?
    • 10.1093/hmg/ddl158 16787967
    • Costa Y Speed RM Gautier P Semple CA Maratou K Turner JM Cooke HJ Mouse MAELSTROM: The link between meiotic silencing of unsynapsed chromatin and microRNA pathway? Hum Mol Genet 2006, 15(15):2324-2334. 10.1093/hmg/ ddl158 16787967
    • (2006) Hum Mol Genet , vol.15 , Issue.15 , pp. 2324-2334
    • Costa, Y.1    Speed, R.M.2    Gautier, P.3    Semple, C.A.4    Maratou, K.5    Turner, J.M.6    Cooke, H.J.7
  • 31
    • 17044417320 scopus 로고    scopus 로고
    • Chromatin and RNAi factors protect the C. elegans germline against repetitive sequences
    • 1074315 15774721 10.1101/gad.332305
    • Robert VJ Sijen T van Wolfswinkel J Plasterk RH Chromatin and RNAi factors protect theC. elegans germline against repetitive sequences Genes Dev 2005, 19(7):782-787. 1074315 15774721 10.1101/gad.332305
    • (2005) Genes Dev , vol.19 , Issue.7 , pp. 782-787
    • Robert, V.J.1    Sijen, T.2    van Wolfswinkel, J.3    Plasterk, R.H.4
  • 32
    • 24344498241 scopus 로고    scopus 로고
    • HMG proteins: Dynamic players in gene regulation and differentiation
    • 10.1016/j.gde.2005.08.007 16102963
    • Bianchi ME Agresti A HMG proteins: Dynamic players in gene regulation and differentiation Curr Opin Genet Dev 2005, 15(5):496-506. 10.1016/ j.gde.2005.08.007 16102963
    • (2005) Curr Opin Genet Dev , vol.15 , Issue.5 , pp. 496-506
    • Bianchi, M.E.1    Agresti, A.2
  • 33
    • 22144452139 scopus 로고    scopus 로고
    • Hox clusters as models for vertebrate genome evolution
    • 10.1016/j.tig.2005.06.004 15967537
    • Hoegg S Meyer A Hox clusters as models for vertebrate genome evolution Trends Genet 2005, 21(8):421-424. 10.1016/j.tig.2005.06.004 15967537
    • (2005) Trends Genet , vol.21 , Issue.8 , pp. 421-424
    • Hoegg, S.1    Meyer, A.2
  • 34
    • 0035313874 scopus 로고    scopus 로고
    • Functional significance of histone deacetylase diversity
    • 10.1016/S0959-437X(00)00174-X 11250139
    • Khochbin S Verdel A Lemercier C Seigneurin-Berny D Functional significance of histone deacetylase diversity Curr Opin Genet Dev 2001, 11(2):162-166. 10.1016/S0959-437X(00)00174-X 11250139
    • (2001) Curr Opin Genet Dev , vol.11 , Issue.2 , pp. 162-166
    • Khochbin, S.1    Verdel, A.2    Lemercier, C.3    Seigneurin-Berny, D.4
  • 35
    • 0033618555 scopus 로고    scopus 로고
    • Detecting protein function and protein-protein interactions from genome sequences
    • 10.1126/science.285.5428.751 10427000
    • Marcotte EM Pellegrini M Ng HL Rice DW Yeates TO Eisenberg D Detecting protein function and protein-protein interactions from genome sequences Science 1999, 285(5428):751-753. 10.1126/science.285.5428.751 10427000
    • (1999) Science , vol.285 , Issue.5428 , pp. 751-753
    • Marcotte, E.M.1    Pellegrini, M.2    Ng, H.L.3    Rice, D.W.4    Yeates, T.O.5    Eisenberg, D.6
  • 36
    • 0026663165 scopus 로고
    • PRP38 encodes a yeast protein required for pre-mRNA splicing and maintenance of stable U6 small nuclear RNA levels
    • 360275 1508195
    • Blanton S Srinivasan A Rymond BC PRP38 encodes a yeast protein required for pre-mRNA splicing and maintenance of stable U6 small nuclear RNA levels Mol Cell Biol 1992, 12(9):3939-3947. 360275 1508195
    • (1992) Mol Cell Biol , vol.12 , Issue.9 , pp. 3939-3947
    • Blanton, S.1    Srinivasan, A.2    Rymond, B.C.3
  • 37
    • 34248590379 scopus 로고    scopus 로고
    • SCOOP: A simple method for identification of novel protein superfamily relationships
    • 10.1093/bioinformatics/btm034 17277330 2603044
    • Bateman A Finn RD SCOOP: A simple method for identification of novel protein superfamily relationships Bioinformatics 2007, 23(7):809-814. 10.1093/bioinformatics/btm034 17277330 2603044
    • (2007) Bioinformatics , vol.23 , Issue.7 , pp. 809-814
    • Bateman, A.1    Finn, R.D.2
  • 38
    • 22244450719 scopus 로고    scopus 로고
    • Protein families and their evolution-a structural perspective
    • 10.1146/annurev.biochem.74.082803.133029 15954844
    • Orengo CA Thornton JM Protein families and their evolution-a structural perspective Annu Rev Biochem 2005, 74:867-900. 10.1146/ annurev.biochem.74.082803.133029 15954844
    • (2005) Annu Rev Biochem , vol.74 , pp. 867-900
    • Orengo, C.A.1    Thornton, J.M.2
  • 39
    • 0038386050 scopus 로고    scopus 로고
    • 3D-Jury: A simple approach to improve protein structure predictions
    • Ginalski K Elofsson A Fischer D Rychlewski L 3D-Jury: A simple approach to improve protein structure predictions Bioinformatics 2003, 19(8):1015-1018. 10.1093/bioinformatics/btg124 12761065
    • (2003) Bioinformatics , vol.19 , pp. 1015-1018
    • Ginalski, K.1    Elofsson, A.2    Fischer, D.3    Rychlewski, L.4
  • 40
    • 0041620404 scopus 로고    scopus 로고
    • Detection of reliable and unexpected protein fold predictions using 3D-Jury
    • 168910 12824309 10.1093/nar/gkg503
    • Ginalski K Rychlewski L Detection of reliable and unexpected protein fold predictions using 3D-Jury Nucleic Acids Res 2003, 31(13):3291-3292. 168910 12824309 10.1093/nar/gkg503
    • (2003) Nucleic Acids Res , vol.31 , Issue.13 , pp. 3291-3292
    • Ginalski, K.1    Rychlewski, L.2
  • 41
    • 0035283033 scopus 로고    scopus 로고
    • Exoribonuclease superfamilies: Structural analysis and phylogenetic distribution
    • 56904 11222749 10.1093/nar/29.5.1017
    • Zuo Y Deutscher MP Exoribonuclease superfamilies: Structural analysis and phylogenetic distribution Nucleic Acids Res 2001, 29(5):1017-1026. 56904 11222749 10.1093/nar/29.5.1017
    • (2001) Nucleic Acids Res , vol.29 , Issue.5 , pp. 1017-1026
    • Zuo, Y.1    Deutscher, M.P.2
  • 42
    • 0345832225 scopus 로고    scopus 로고
    • X-ray structure and activity of the yeast Pop2 protein: A nuclease subunit of the mRNA deadenylase complex
    • 1326415 14618157 10.1038/sj.embor.7400020
    • Thore S Mauxion F Seraphin B Suck D X-ray structure and activity of the yeast Pop2 protein: A nuclease subunit of the mRNA deadenylase complex EMBO Rep 2003, 4(12):1150-1155. 1326415 14618157 10.1038/sj.embor.7400020
    • (2003) EMBO Rep , vol.4 , Issue.12 , pp. 1150-1155
    • Thore, S.1    Mauxion, F.2    Seraphin, B.3    Suck, D.4
  • 43
    • 3242882573 scopus 로고    scopus 로고
    • CE-MC: A multiple protein structure alignment server
    • (Web Server) 441602 15215359 10.1093/nar/gkh464
    • Guda C Lu S Scheeff ED Bourne PE Shindyalov IN CE-MC: A multiple protein structure alignment server Nucleic Acids Res 2004, 32(Web Server):W100-103. 441602 15215359 10.1093/nar/gkh464
    • (2004) Nucleic Acids Res
    • Guda, C.1    Lu, S.2    Scheeff, E.D.3    Bourne, P.E.4    Shindyalov, I.N.5
  • 44
    • 0141523251 scopus 로고    scopus 로고
    • Beta edge strands in protein structure prediction and aggregation
    • 2366916 14500893 10.1110/ps.03234503
    • Siepen JA Radford SE Westhead DR Beta edge strands in protein structure prediction and aggregation Protein Sci 2003, 12(10):2348-2359. 2366916 14500893 10.1110/ps.03234503
    • (2003) Protein Sci , vol.12 , Issue.10 , pp. 2348-2359
    • Siepen, J.A.1    Radford, S.E.2    Westhead, D.R.3
  • 45
    • 17644407757 scopus 로고    scopus 로고
    • The human TREX2 3′ -> 5′-exonuclease structure suggests a mechanism for efficient nonprocessive DNA catalysis
    • 10.1074/jbc.M500108200 15661738
    • Perrino FW Harvey S McMillin S Hollis T The human TREX2 3′ -> 5′-exonuclease structure suggests a mechanism for efficient nonprocessive DNA catalysis J Biol Chem 2005, 280(15):15212-15218. 10.1074/jbc.M500108200 15661738
    • (2005) J Biol Chem , vol.280 , Issue.15 , pp. 15212-15218
    • Perrino, F.W.1    Harvey, S.2    McMillin, S.3    Hollis, T.4
  • 46
    • 4644324017 scopus 로고    scopus 로고
    • Crystallographic structure of the nuclease domain of 3′hExo, a DEDDh family member, bound to rAMP
    • 10.1016/j.jmb.2004.08.055 15451662
    • Cheng Y Patel DJ Crystallographic structure of the nuclease domain of 3′hExo, a DEDDh family member, bound to rAMP J Mol Biol 2004, 343(2):305-312. 10.1016/j.jmb.2004.08.055 15451662
    • (2004) J Mol Biol , vol.343 , Issue.2 , pp. 305-312
    • Cheng, Y.1    Patel, D.J.2
  • 47
    • 0036229246 scopus 로고    scopus 로고
    • Structural basis for proofreading during replication of the Escherichia coli chromosome
    • 10.1016/S0969-2126(02)00738-4 11937058
    • Hamdan S Carr PD Brown SE Ollis DL Dixon NE Structural basis for proofreading during replication of the Escherichia coli chromosome Structure 2002, 10(4):535-546. 10.1016/S0969-2126(02)00738-4 11937058
    • (2002) Structure , vol.10 , Issue.4 , pp. 535-546
    • Hamdan, S.1    Carr, P.D.2    Brown, S.E.3    Ollis, D.L.4    Dixon, N.E.5
  • 48
    • 33747869041 scopus 로고    scopus 로고
    • DiANNA 1.1: An extension of the DiANNA web server for ternary cysteine classification
    • (Web Server) 1538812 16844987 10.1093/nar/gkl189
    • Ferre F Clote P DiANNA 1.1: An extension of the DiANNA web server for ternary cysteine classification Nucleic Acids Res 2006, 34(Web Server):W182-185. 1538812 16844987 10.1093/nar/gkl189
    • (2006) Nucleic Acids Res
    • Ferre, F.1    Clote, P.2
  • 49
    • 0034664813 scopus 로고    scopus 로고
    • SURVEY AND SUMMARY: Holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories
    • 110722 10982859 10.1093/nar/28.18.3417
    • Aravind L Makarova KS Koonin EV SURVEY AND SUMMARY: Holliday junction resolvases and related nucleases: Identification of new families, phyletic distribution and evolutionary trajectories Nucleic Acids Res 2000, 28(18):3417-3432. 110722 10982859 10.1093/nar/28.18.3417
    • (2000) Nucleic Acids Res , vol.28 , Issue.18 , pp. 3417-3432
    • Aravind, L.1    Makarova, K.S.2    Koonin, E.V.3
  • 50
    • 0029129435 scopus 로고
    • Structure of the bacteriophage Mu transposase core: A common structural motif for DNA transposition and retroviral integration
    • 10.1016/0092-8674(95)90308-9 7628012
    • Rice P Mizuuchi K Structure of the bacteriophage Mu transposase core: A common structural motif for DNA transposition and retroviral integration Cell 1995, 82(2):209-220. 10.1016/0092-8674(95)90308-9 7628012
    • (1995) Cell , vol.82 , Issue.2 , pp. 209-220
    • Rice, P.1    Mizuuchi, K.2
  • 51
    • 0028120546 scopus 로고
    • Atomic structure of the RuvC resolvase: A holliday junction-specific endonuclease from E. coli
    • 10.1016/0092-8674(94)90280-1 7923356
    • Ariyoshi M Vassylyev DG Iwasaki H Nakamura H Shinagawa H Morikawa K Atomic structure of the RuvC resolvase: A holliday junction-specific endonuclease from E. coli Cell 1994, 78(6):1063-1072. 10.1016/ 0092-8674(94)90280-1 7923356
    • (1994) Cell , vol.78 , Issue.6 , pp. 1063-1072
    • Ariyoshi, M.1    Vassylyev, D.G.2    Iwasaki, H.3    Nakamura, H.4    Shinagawa, H.5    Morikawa, K.6
  • 52
    • 0027377121 scopus 로고
    • Crystal structure of Escherichia coli RNase HI in complex with Mg2+ at 2.8 A resolution: Proof for a single Mg(2+)-binding site
    • 10.1002/prot.340170402 8108376
    • Katayanagi K Okumura M Morikawa K Crystal structure of Escherichia coli RNase HI in complex with Mg2+ at 2.8 A resolution: Proof for a single Mg(2+)-binding site Proteins 1993, 17(4):337-346. 10.1002/prot.340170402 8108376
    • (1993) Proteins , vol.17 , Issue.4 , pp. 337-346
    • Katayanagi, K.1    Okumura, M.2    Morikawa, K.3
  • 53
    • 1342346710 scopus 로고    scopus 로고
    • A conserved siRNA-degrading RNase negatively regulates RNA interference in C. elegans
    • 10.1038/nature02302 14961122
    • Kennedy S Wang D Ruvkun G A conserved siRNA-degrading RNase negatively regulates RNA interference in C. elegans Nature 2004, 427(6975):645-649. 10.1038/nature02302 14961122
    • (2004) Nature , vol.427 , Issue.6975 , pp. 645-649
    • Kennedy, S.1    Wang, D.2    Ruvkun, G.3
  • 54
    • 0029075207 scopus 로고
    • Structure of HIV-1 RT/TIBO R 86183 complex reveals similarity in the binding of diverse nonnucleoside inhibitors
    • 10.1038/nsb0595-407 7545077
    • Ding J Das K Moereels H Koymans L Andries K Janssen PA Hughes SH Arnold E Structure of HIV-1 RT/TIBO R 86183 complex reveals similarity in the binding of diverse nonnucleoside inhibitors Nat Struct Biol 1995, 2(5):407-415. 10.1038/nsb0595-407 7545077
    • (1995) Nat Struct Biol , vol.2 , Issue.5 , pp. 407-415
    • Ding, J.1    Das, K.2    Moereels, H.3    Koymans, L.4    Andries, K.5    Janssen, P.A.6    Hughes, S.H.7    Arnold, E.8
  • 56
    • 15844402005 scopus 로고    scopus 로고
    • Structural insights into mRNA recognition from a PIWI domain-siRNA guide complex
    • 10.1038/nature03462 15800628
    • Parker JS Roe SM Barford D Structural insights into mRNA recognition from a PIWI domain-siRNA guide complex Nature 2005, 434(7033):663-666. 10.1038/nature03462 15800628
    • (2005) Nature , vol.434 , Issue.7033 , pp. 663-666
    • Parker, J.S.1    Roe, S.M.2    Barford, D.3
  • 57
    • 15844371219 scopus 로고    scopus 로고
    • Structural basis for 5′-end-specific recognition of guide RNA by the A. fulgidus Piwi protein
    • 10.1038/nature03514 15800629
    • Ma JB Yuan YR Meister G Pei Y Tuschl T Patel DJ Structural basis for 5′-end-specific recognition of guide RNA by the A. fulgidus Piwi protein Nature 2005, 434(7033):666-670. 10.1038/nature03514 15800629
    • (2005) Nature , vol.434 , Issue.7033 , pp. 666-670
    • Ma, J.B.1    Yuan, Y.R.2    Meister, G.3    Pei, Y.4    Tuschl, T.5    Patel, D.J.6
  • 58
    • 35448995715 scopus 로고    scopus 로고
    • Analysis of zinc-ligand bond lengths in metalloproteins: Trends and patterns
    • 10.1002/prot.21536 17623850
    • Tamames B Sousa SF Tamames J Fernandes PA Ramos MJ Analysis of zinc-ligand bond lengths in metalloproteins: Trends and patterns Proteins 2007, 69(3):466-475. 10.1002/prot.21536 17623850
    • (2007) Proteins , vol.69 , Issue.3 , pp. 466-475
    • Tamames, B.1    Sousa, S.F.2    Tamames, J.3    Fernandes, P.A.4    Ramos, M.J.5
  • 59
    • 31344461104 scopus 로고    scopus 로고
    • Crystal structural analysis and metal-dependent stability and activity studies of the ColE7 endonuclease domain in complex with DNA/Zn2+ or inhibitor/Ni2+
    • 2242460 16434744 10.1110/ps.051903406
    • Doudeva LG Huang H Hsia KC Shi Z Li CL Shen Y Cheng YS Yuan HS Crystal structural analysis and metal-dependent stability and activity studies of the ColE7 endonuclease domain in complex with DNA/Zn2+ or inhibitor/ Ni2+ Protein Sci 2006, 15(2):269-280. 2242460 16434744 10.1110/ ps.051903406
    • (2006) Protein Sci , vol.15 , Issue.2 , pp. 269-280
    • Doudeva, L.G.1    Huang, H.2    Hsia, K.C.3    Shi, Z.4    Li, C.L.5    Shen, Y.6    Cheng, Y.S.7    Yuan, H.S.8
  • 60
    • 34247269203 scopus 로고    scopus 로고
    • Crystal structure of the zinc-binding transport protein ZnuA from Escherichia coli reveals an unexpected variation in metal coordination
    • 10.1016/j.jmb.2007.02.107 17399739
    • Li H Jogl G Crystal structure of the zinc-binding transport protein ZnuA from Escherichia coli reveals an unexpected variation in metal coordination J Mol Biol 2007, 368(5):1358-1366. 10.1016/ j.jmb.2007.02.107 17399739
    • (2007) J Mol Biol , vol.368 , Issue.5 , pp. 1358-1366
    • Li, H.1    Jogl, G.2
  • 61
    • 0029761259 scopus 로고    scopus 로고
    • Novel active site in Escherichia coli fructose 1,6-bisphosphate aldolase
    • 10.1038/nsb1096-856 8836102
    • Blom NS Tetreault S Coulombe R Sygusch J Novel active site in Escherichia coli fructose 1,6-bisphosphate aldolase Nat Struct Biol 1996, 3(10):856-862. 10.1038/nsb1096-856 8836102
    • (1996) Nat Struct Biol , vol.3 , Issue.10 , pp. 856-862
    • Blom, N.S.1    Tetreault, S.2    Coulombe, R.3    Sygusch, J.4
  • 62
    • 33750824034 scopus 로고    scopus 로고
    • Analysis of the C. elegans Argonaute family reveals that distinct Argonautes act sequentially during RNAi
    • 10.1016/j.cell.2006.09.033 17110334
    • Yigit E Batista PJ Bei Y Pang KM Chen CC Tolia NH Joshua-Tor L Mitani S Simard MJ Mello CC Analysis of the C. elegans Argonaute family reveals that distinct Argonautes act sequentially during RNAi Cell 2006, 127(4):747-757. 10.1016/j.cell.2006.09.033 17110334
    • (2006) Cell , vol.127 , Issue.4 , pp. 747-757
    • Yigit, E.1    Batista, P.J.2    Bei, Y.3    Pang, K.M.4    Chen, C.C.5    Tolia, N.H.6    Joshua-Tor, L.7    Mitani, S.8    Simard, M.J.9    Mello, C.C.10
  • 63
    • 0035339923 scopus 로고    scopus 로고
    • Birth and death of duplicated genes in completely sequenced eukaryotes
    • 10.1016/S0168-9525(01)02243-0 11335019
    • Wagner A Birth and death of duplicated genes in completely sequenced eukaryotes Trends Genet 2001, 17(5):237-239. 10.1016/ S0168-9525(01)02243-0 11335019
    • (2001) Trends Genet , vol.17 , Issue.5 , pp. 237-239
    • Wagner, A.1
  • 64
    • 24644486449 scopus 로고    scopus 로고
    • Timing and mechanism of ancient vertebrate genome duplications - The adventure of a hypothesis
    • 10.1016/j.tig.2005.08.004 16099069
    • Panopoulou G Poustka AJ Timing and mechanism of ancient vertebrate genome duplications - the adventure of a hypothesis Trends Genet 2005, 21(10):559-567. 10.1016/j.tig.2005.08.004 16099069
    • (2005) Trends Genet , vol.21 , Issue.10 , pp. 559-567
    • Panopoulou, G.1    Poustka, A.J.2
  • 65
    • 17744374506 scopus 로고    scopus 로고
    • Evolution of RAG-1 in polyploid clawed frogs
    • 10.1093/molbev/msi104 15703243
    • Evans BJ Kelley DB Melnick DJ Cannatella DC Evolution of RAG-1 in polyploid clawed frogs Mol Biol Evol 2005, 22(5):1193-1207. 10.1093/ molbev/msi104 15703243
    • (2005) Mol Biol Evol , vol.22 , Issue.5 , pp. 1193-1207
    • Evans, B.J.1    Kelley, D.B.2    Melnick, D.J.3    Cannatella, D.C.4
  • 66
    • 33749850941 scopus 로고    scopus 로고
    • SANTA domain: A novel conserved protein module in Eukaryota with potential involvement in chromatin regulation
    • 10.1093/bioinformatics/btl414 16877755
    • Zhang D Martyniuk CJ Trudeau VL SANTA domain: A novel conserved protein module in Eukaryota with potential involvement in chromatin regulation Bioinformatics 2006, 22(20):2459-2462. 10.1093/bioinformatics/btl414 16877755
    • (2006) Bioinformatics , vol.22 , Issue.20 , pp. 2459-2462
    • Zhang, D.1    Martyniuk, C.J.2    Trudeau, V.L.3
  • 67
    • 47749145734 scopus 로고    scopus 로고
    • The XS domain of a plant specific SGS3 protein adopts a unique RNA recognition motif (RRM) fold
    • 18635957
    • Zhang D Trudeau VL The XS domain of a plant specific SGS3 protein adopts a unique RNA recognition motif (RRM) fold Cell Cycle 2008, 7(14):2268-2270. 18635957
    • (2008) Cell Cycle , vol.7 , Issue.14 , pp. 2268-2270
    • Zhang, D.1    Trudeau, V.L.2
  • 68
    • 25144480502 scopus 로고    scopus 로고
    • Comparative genomics of Dictyostelium discoideum and Entamoeba histolytica
    • 10.1016/j.mib.2005.08.009 16125444
    • Eichinger L Noegel AA Comparative genomics of Dictyostelium discoideum and Entamoeba histolytica Curr Opin Microbiol 2005, 8(5):606-611. 10.1016/j.mib.2005.08.009 16125444
    • (2005) Curr Opin Microbiol , vol.8 , Issue.5 , pp. 606-611
    • Eichinger, L.1    Noegel, A.A.2
  • 69
    • 33748525221 scopus 로고    scopus 로고
    • Evolution of enzyme superfamilies
    • 10.1016/j.cbpa.2006.08.012 16935022
    • Glasner ME Gerlt JA Babbitt PC Evolution of enzyme superfamilies Curr Opin Chem Biol 2006, 10(5):492-497. 10.1016/j.cbpa.2006.08.012 16935022
    • (2006) Curr Opin Chem Biol , vol.10 , Issue.5 , pp. 492-497
    • Glasner, M.E.1    Gerlt, J.A.2    Babbitt, P.C.3
  • 70
    • 0036683309 scopus 로고    scopus 로고
    • Plasticity of enzyme active sites
    • 10.1016/S0968-0004(02)02158-8 12151227
    • Todd AE Orengo CA Thornton JM Plasticity of enzyme active sites Trends Biochem Sci 2002, 27(8):419-426. 10.1016/S0968-0004(02)02158-8 12151227
    • (2002) Trends Biochem Sci , vol.27 , Issue.8 , pp. 419-426
    • Todd, A.E.1    Orengo, C.A.2    Thornton, J.M.3
  • 71
    • 0037304408 scopus 로고    scopus 로고
    • Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins
    • 10.1016/S1367-5931(02)00018-2 12547421
    • Anantharaman V Aravind L Koonin EV Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins Curr Opin Chem Biol 2003, 7(1):12-20. 10.1016/S1367-5931(02)00018-2 12547421
    • (2003) Curr Opin Chem Biol , vol.7 , Issue.1 , pp. 12-20
    • Anantharaman, V.1    Aravind, L.2    Koonin, E.V.3
  • 73
    • 31544477181 scopus 로고    scopus 로고
    • Design and evolution of new catalytic activity with an existing protein scaffold
    • 10.1126/science.1118953 16439663
    • Park HS Nam SH Lee JK Yoon CN Mannervik B Benkovic SJ Kim HS Design and evolution of new catalytic activity with an existing protein scaffold Science 2006, 311(5760):535-538. 10.1126/science.1118953 16439663
    • (2006) Science , vol.311 , Issue.5760 , pp. 535-538
    • Park, H.S.1    Nam, S.H.2    Lee, J.K.3    Yoon, C.N.4    Mannervik, B.5    Benkovic, S.J.6    Kim, H.S.7
  • 74
    • 40049106856 scopus 로고    scopus 로고
    • A study in molecular contingency: Glutamine phosphoribosylpyrophosphate amidotransferase is a promiscuous and evolvable phosphoribosylanthranilate isomerase
    • 10.1016/j.jmb.2008.01.043 18272177
    • Patrick WM Matsumura I A study in molecular contingency: Glutamine phosphoribosylpyrophosphate amidotransferase is a promiscuous and evolvable phosphoribosylanthranilate isomerase J Mol Biol 2008, 377(2):323-336. 10.1016/j.jmb.2008.01.043 18272177
    • (2008) J Mol Biol , vol.377 , Issue.2 , pp. 323-336
    • Patrick, W.M.1    Matsumura, I.2
  • 75
    • 0036600834 scopus 로고    scopus 로고
    • Evolution of protein structures and functions
    • 10.1016/S0959-440X(02)00338-X 12127461
    • Kinch LN Grishin NV Evolution of protein structures and functions Curr Opin Struct Biol 2002, 12(3):400-408. 10.1016/S0959-440X(02)00338-X 12127461
    • (2002) Curr Opin Struct Biol , vol.12 , Issue.3 , pp. 400-408
    • Kinch, L.N.1    Grishin, N.V.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.