-
1
-
-
0033911879
-
Functional interaction of CCR4-NOT proteins with TATAA-binding protein (TBP) and its associated factors in yeast
-
Badarinarayana, V., Chiang, Y.C. & Denis, C.L. (2000) Functional interaction of CCR4-NOT proteins with TATAA-binding protein (TBP) and its associated factors in yeast. Genetics, 155, 1045-1054.
-
(2000)
Genetics
, vol.155
, pp. 1045-1054
-
-
Badarinarayana, V.1
Chiang, Y.C.2
Denis, C.L.3
-
2
-
-
0032874875
-
The CCR4 and CAF1 proteins of the CCR4-NOT complex are physically and functionally separated from NOT2, NOT4, and NOT5
-
Bai, Y., Salvadore, C., Chiang, Y.C., Collart, M.A., Liu, H.Y. & Denis, C.L. (1999) The CCR4 and CAF1 proteins of the CCR4-NOT complex are physically and functionally separated from NOT2, NOT4, and NOT5. Mol. Cell. Biol., 19, 6642-6651.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 6642-6651
-
-
Bai, Y.1
Salvadore, C.2
Chiang, Y.C.3
Collart, M.A.4
Liu, H.Y.5
Denis, C.L.6
-
3
-
-
0032538977
-
Association of distinct yeast Not2 functional domains with components of Gcn5 histone acetylase and Ccr4 transcriptional regulatory complexes
-
Benson, J. D., Benson, M., Howley, P.M. & Struhl, K. (1998) Association of distinct yeast Not2 functional domains with components of Gcn5 histone acetylase and Ccr4 transcriptional regulatory complexes. EMBO J., 17, 6714-6722.
-
(1998)
EMBO J.
, vol.17
, pp. 6714-6722
-
-
Benson, J.D.1
Benson, M.2
Howley, P.M.3
Struhl, K.4
-
4
-
-
0033664281
-
Structure of Escherichia coli exonuclease I suggests how processivity is achieved
-
Breyer, W.A. & Matthews, B.W. (2000) Structure of Escherichia coli exonuclease I suggests how processivity is achieved. Nature Struct. Biol., 7, 1125-1128.
-
(2000)
Nature Struct. Biol.
, vol.7
, pp. 1125-1128
-
-
Breyer, W.A.1
Matthews, B.W.2
-
5
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger, A.T. et al. (1998) Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr. D, 54, 905-921.
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
-
6
-
-
0029871812
-
Mechanisms and control of mRNA turnover in Saccharomyces cerevisiae
-
Caponigro, G. & Parker, R. (1996) Mechanisms and control of mRNA turnover in Saccharomyces cerevisiae. Microbiol. Rev., 60, 233-249.
-
(1996)
Microbiol. Rev.
, vol.60
, pp. 233-249
-
-
Caponigro, G.1
Parker, R.2
-
7
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
CCP4, C.C.P
-
CCP4, C.C.P. (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D, 50, 760-763.
-
(1994)
Acta Crystallogr. D
, vol.50
, pp. 760-763
-
-
-
8
-
-
0035824883
-
Purification and characterization of the 1.0 MDa CCR4-NOT complex identifies two novel components of the complex
-
Chen, J., Rappsilber, J., Chiang, Y.C., Russell, P., Mann, M. & Denis, C.L. (2001) Purification and characterization of the 1.0 MDa CCR4-NOT complex identifies two novel components of the complex. J. Mol. Biol., 314, 683-694.
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 683-694
-
-
Chen, J.1
Rappsilber, J.2
Chiang, Y.C.3
Russell, P.4
Mann, M.5
Denis, C.L.6
-
9
-
-
0037086701
-
CCR4, a 3′-5′ poly(A) RNA and ssDNA exonuclease, is the catalytic component of the cytoplasmic deadenylase
-
Chen, J., Chiang, Y.C. & Denis, C.L. (2002) CCR4, a 3′-5′ poly(A) RNA and ssDNA exonuclease, is the catalytic component of the cytoplasmic deadenylase. EMBO J., 21, 1414-1426.
-
(2002)
EMBO J.
, vol.21
, pp. 1414-1426
-
-
Chen, J.1
Chiang, Y.C.2
Denis, C.L.3
-
10
-
-
0035875115
-
The yeast POP2 gene encodes a nuclease involved in mRNA deadenylation
-
Daugeron, M.C., Mauxion, F. & Seraphin, B. (2001) The yeast POP2 gene encodes a nuclease involved in mRNA deadenylation. Nucleic Acids Res., 29, 2448-2455.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2448-2455
-
-
Daugeron, M.C.1
Mauxion, F.2
Seraphin, B.3
-
11
-
-
0021702006
-
Identification of new genes involved in the regulation of yeast alcohol dehydrogenase II
-
Denis, C.L. (1984) Identification of new genes involved in the regulation of yeast alcohol dehydrogenase II. Genetics, 108, 833-844.
-
(1984)
Genetics
, vol.108
, pp. 833-844
-
-
Denis, C.L.1
-
12
-
-
0000126425
-
A cell for producing xenon-derivative crystals for cryocrystallographic analysis
-
Djinovic-Carugo, K., Everitt, P. & Tucker, P.A. (1998) A cell for producing xenon-derivative crystals for cryocrystallographic analysis. J. Appl. Crystallogr., 31, 812-814.
-
(1998)
J. Appl. Crystallogr.
, vol.31
, pp. 812-814
-
-
Djinovic-Carugo, K.1
Everitt, P.2
Tucker, P.A.3
-
13
-
-
0034213216
-
2+-dependent endonucleases
-
2+-dependent endonucleases. Trends Biochem. Sci., 25, 272-273.
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 272-273
-
-
Dlakic, M.1
-
14
-
-
0028304670
-
CCR4 is a glucose-regulated transcription factor whose leucine-rich repeat binds several proteins important for placing CCR4 in its proper promoter context
-
Draper, M.P., Liu, H.Y., Nelsbach, A.H., Mosley, S.P. & Denis, C.L. (1994) CCR4 is a glucose-regulated transcription factor whose leucine-rich repeat binds several proteins important for placing CCR4 in its proper promoter context. Mol. Cell. Biol., 14, 4522-4531.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 4522-4531
-
-
Draper, M.P.1
Liu, H.Y.2
Nelsbach, A.H.3
Mosley, S.P.4
Denis, C.L.5
-
15
-
-
0029025449
-
Identification of a mouse protein whose homolog in Saccharomyces cerevisiae is a component of the CCR4 transcriptional regulatory complex
-
Draper, M.P., Salvadore, C. & Denis, C.L. (1995) Identification of a mouse protein whose homolog in Saccharomyces cerevisiae is a component of the CCR4 transcriptional regulatory complex. Mol. Cell. Biol., 15, 3487-3495.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 3487-3495
-
-
Draper, M.P.1
Salvadore, C.2
Denis, C.L.3
-
16
-
-
0036229246
-
Structural basis for proofreading during replication of the Escherichia coli chromosome
-
Hamdan, S., Carr, P.D., Brown, S.E., Ollis, D.L. & Dixon, N.E. (2002) Structural basis for proofreading during replication of the Escherichia coli chromosome. Structure (Camb.), 10, 535-546.
-
(2002)
Structure (Camb.)
, vol.10
, pp. 535-546
-
-
Hamdan, S.1
Carr, P.D.2
Brown, S.E.3
Ollis, D.L.4
Dixon, N.E.5
-
17
-
-
84889120137
-
Improved methods for binding protein models in electron density maps and the location of errors in these models
-
Jones, T.A., Zou, J.Y., Cowan, S.W. & Kjeldgaard, M. (1991) Improved methods for binding protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A, 47, 110-119.
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
18
-
-
0028206048
-
Function and structure relationships in DNA polymerases
-
Joyce, C.M. & Steitz, T.A. (1994) Function and structure relationships in DNA polymerases. Annu. Rev. Biochem., 63, 777-822.
-
(1994)
Annu. Rev. Biochem.
, vol.63
, pp. 777-822
-
-
Joyce, C.M.1
Steitz, T.A.2
-
19
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R.A., MacArthur, M.W., Moss, D.S. & Thornton, J.M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr., 26, 283-291.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
20
-
-
0034282911
-
The TATA-hinding protein-associated factor yTafll19p functionally interacts with components of the global transcriptional regulator Ccr4-Not complex and physically interacts with the Not5 subunit
-
Lemaire, M. & Collart, M.A. (2000) The TATA-hinding protein-associated factor yTafll19p functionally interacts with components of the global transcriptional regulator Ccr4-Not complex and physically interacts with the Not5 subunit. J. Biol. Chem., 275, 26925-26934.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 26925-26934
-
-
Lemaire, M.1
Collart, M.A.2
-
21
-
-
0030864777
-
DBF2, a cell cycle-regulated protein kinase, is physically and functionally associated with the CCR4 transcriptional regulatory complex
-
Liu, H.Y., Toyn, J.H., Chiang, Y.C., Draper, M.P., Johnston, L.H. & Denis, C.L. (1997) DBF2, a cell cycle-regulated protein kinase, is physically and functionally associated with the CCR4 transcriptional regulatory complex. EMBO J., 16, 5289-5298.
-
(1997)
EMBO J.
, vol.16
, pp. 5289-5298
-
-
Liu, H.Y.1
Toyn, J.H.2
Chiang, Y.C.3
Draper, M.P.4
Johnston, L.H.5
Denis, C.L.6
-
22
-
-
0032481349
-
The NOT proteins are part of the CCR4 transcriptional complex and affect gene expression both positively and negatively
-
Liu, H.Y., Badarinarayana, V., Audino, D.C., Rappsilber, J., Mann, M. & Denis, C.L (1998) The NOT proteins are part of the CCR4 transcriptional complex and affect gene expression both positively and negatively. EMBO J., 17, 1096-1106.
-
(1998)
EMBO J.
, vol.17
, pp. 1096-1106
-
-
Liu, H.Y.1
Badarinarayana, V.2
Audino, D.C.3
Rappsilber, J.4
Mann, M.5
Denis, C.L.6
-
23
-
-
0035831551
-
Characterization of CAF4 and CAF16 reveals a functional connection between the CCR4-NOT complex and a subset of SRB proteins of the RNA polymerase II holoenzyme
-
Liu, H.Y., Badarinarayana, V., Audino, D.C., Rappsilber, J., Mann, M. & Denis, C. (2001) Characterization of CAF4 and CAF16 reveals a functional connection between the CCR4-NOT complex and a subset of SRB proteins of the RNA polymerase II holoenzyme. J. Biol. Chem., 276, 7541-7548.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 7541-7548
-
-
Liu, H.Y.1
Badarinarayana, V.2
Audino, D.C.3
Rappsilber, J.4
Mann, M.5
Denis, C.6
-
24
-
-
0030836805
-
Comparative sequence analysis of ribonucleases HII, III, II PH and D
-
Mian, I.S. (1997) Comparative sequence analysis of ribonucleases HII, III, II PH and D. Nucleic Acids Res., 25, 3187-3195.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3187-3195
-
-
Mian, I.S.1
-
25
-
-
0035873250
-
Yak1p, a DYRK family kinase, translocates to the nucleus and phosphorylates yeast Pop2p in response to a glucose signal
-
Moriya, H., Shimizu-Yoshida, Y., Omori, A., Iwashita, S., Katoh, M. & Sakai, A. (2001) Yak1p, a DYRK family kinase, translocates to the nucleus and phosphorylates yeast Pop2p in response to a glucose signal. Genes Dev., 15, 1217-1228.
-
(2001)
Genes Dev.
, vol.15
, pp. 1217-1228
-
-
Moriya, H.1
Shimizu-Yoshida, Y.2
Omori, A.3
Iwashita, S.4
Katoh, M.5
Sakai, A.6
-
26
-
-
0031574363
-
The proofreading domain of Escherichia coli DNA polymerase I and other DNA and/or RNA exonuclease domains
-
Moser, M.J., Holley, W.R., Chatterjee, A. & Mian, I.S. (1997) The proofreading domain of Escherichia coli DNA polymerase I and other DNA and/or RNA exonuclease domains. Nucleic Acids Res., 25, 5110-5118.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 5110-5118
-
-
Moser, M.J.1
Holley, W.R.2
Chatterjee, A.3
Mian, I.S.4
-
27
-
-
0021984004
-
Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP
-
Ollis, D.L., Brick, P., Hamlin, R., Xuong, N.G. & Steitz, T.A. (1985) Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP. Nature, 313, 762-766.
-
(1985)
Nature
, vol.313
, pp. 762-766
-
-
Ollis, D.L.1
Brick, P.2
Hamlin, R.3
Xuong, N.G.4
Steitz, T.A.5
-
28
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z. & Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol., 276, 307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
29
-
-
0033896691
-
Maximum-likelihood density modification
-
Terwilliger, T.C. (2000) Maximum-likelihood density modification. Acta Crystallogr. D, 56, 965-972.
-
(2000)
Acta Crystallogr. D
, vol.56
, pp. 965-972
-
-
Terwilliger, T.C.1
-
31
-
-
0035830508
-
The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae
-
Tucker, M., Valencia-Sanchez, M.A., Staples, R.R., Chen, J., Denis, C.L. & Parker, R. (2001) The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae. Cell, 104, 377-386.
-
(2001)
Cell
, vol.104
, pp. 377-386
-
-
Tucker, M.1
Valencia-Sanchez, M.A.2
Staples, R.R.3
Chen, J.4
Denis, C.L.5
Parker, R.6
-
32
-
-
0037086657
-
Ccr4p is the catalytic subunit of a Ccr4p/Pop2p/Notp mRNA deadenylase complex in Saccharomyces cerevisiae
-
Tucker, M., Staples, R.R., Valencia-Sanchez, M.A., Muhlrad, D. & Parker, R. (2002) Ccr4p is the catalytic subunit of a Ccr4p/Pop2p/Notp mRNA deadenylase complex in Saccharomyces cerevisiae. EMBO J., 21, 1427-1436.
-
(2002)
EMBO J.
, vol.21
, pp. 1427-1436
-
-
Tucker, M.1
Staples, R.R.2
Valencia-Sanchez, M.A.3
Muhlrad, D.4
Parker, R.5
-
33
-
-
0037675801
-
Identification of multiple RNA features that influence CCR4 deadenylation activity
-
Viswanathan, P., Chen, J., Chiang, Y.C. & Denis, C.L. (2003) Identification of multiple RNA features that influence CCR4 deadenylation activity. J. Biol. Chem., 278, 14949-14955.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 14949-14955
-
-
Viswanathan, P.1
Chen, J.2
Chiang, Y.C.3
Denis, C.L.4
-
34
-
-
0035283033
-
Exoribonuclease superfamilies: Structural analysis and phylogenetic distribution
-
Zuo, Y. & Deutscher, M.P. (2001) Exoribonuclease superfamilies: structural analysis and phylogenetic distribution. Nucleic Acids Res., 29, 1017-1026.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1017-1026
-
-
Zuo, Y.1
Deutscher, M.P.2
|