Evolution of protein structures and functions

Current Opinion in Structural Biology

Volumn 12, Issue 3, 2002, Pages 400-408

  Kinch, Lisa N ^a   Grishin, Nick V ^a  

^a UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ENZYME; GLUTAMINE AMIDOTRANSFERASE; PROTEIN; PROTEIN HISA; PROTEIN HISF; PROTEIN SUBUNIT; PROTEINASE; UBIQUITIN; UNCLASSIFIED DRUG; ZINC;

DIMERIZATION; ENZYME ACTIVE SITE; GENE DUPLICATION; GENE FUSION; GENE MUTATION; GENETIC VARIABILITY; HUMAN; MOLECULAR EVOLUTION; NONHUMAN; OLIGOMERIZATION; PLASTICITY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN MOTIF; PROTEIN STABILITY; PROTEIN STRUCTURE; REVIEW; AMINO ACID SEQUENCE; CHEMISTRY; GENETICS; MOLECULAR GENETICS; PHYSIOLOGY; PROTEIN TERTIARY STRUCTURE;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; EVOLUTION, MOLECULAR; HUMANS; MOLECULAR SEQUENCE DATA; PROTEIN FOLDING; PROTEIN STRUCTURE, TERTIARY; PROTEINS;

EID: 0036600834     PISSN: 0959440X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0959-440X(02)00338-X     Document Type: Review

References (46)

1. Fold change in evolution of protein structures
2. Structural evidence for evolution of the beta/alpha barrel scaffold by gene duplication and fusion
3. 8-barrel enzyme into two folded halves
4. The N-terminal domain of β B2-crystallin resembles the putative ancestral homodimer
5. Adenylyl cyclase Rv1625c of Mycobacterium tuberculosis: A progenitor of mammalian adenylyl cyclases
6. Structure of the EMAPII domain of human aminoacyl-tRNA synthetase complex reveals evolutionary dimer mimicry
7. Effect of pH and salt bridges on structural assembly: Molecular structures of the monomer and intertwined dimer of the Eps8 SH3 domain
8. The crystal structure of a 3D domain-swapped dimer of RNase A at a 2.1-Å resolution
9. Crystal structure of the cell cycle-regulatory protein suc1 reveals a beta-hinge conformational switch
10. Crystal structure and mutational analysis of the human CDK2 kinase complex with cell cycle-regulatory protein CksHs1
11. Observation of signal transduction in three-dimensional domain swapping
12. The structure of an engineered domain-swapped ribonuclease dimer and its implications for the evolution of proteins toward oligomerization
13. Conversion of monomeric protein L to an obligate dimer by computational protein design
14. Structure and properties of a dimeric N-terminal fragment of human ubiquitin
15. Structure of ubiquitin refined at 1.8 Å resolution
16. Human α1 proteinase inhibitor. Crystal structure analysis of two crystal modifications, molecular model and preliminary analysis of the implications for function
17. The factor VII zymogen structure reveals reregistration of beta strands during activation
18. Peptide exosite inhibitors of factor VIIa as anticoagulants
19. The crystal structure of the complex of blood coagulation factor VIIa with soluble tissue factor
20. The beta-slip. A novel concept in transthyretin amyloidosis
21. A comparative analysis of 23 structures of the amyloidogenic protein transthyretin
22. Evolution of a protein fold in vitro
23. An evolutionary bridge to a new protein fold
24. Protein plasticity to the extreme: Changing the topology of a 4-alpha-helical bundle with a single amino acid substitution
25. The solution structure of VAT-N reveals a 'missing link' in the evolution of complex enzymes from a simple βαββ element
26. On the evolution of protein folds: Are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world?
27. Function driven protein evolution. A possible proto-protein for the RNA-binding proteins
28. Sialidase-like Asp-boxes: Sequence-similar structures within different protein folds
29. Crystal structure of Vibrio cholerae neuraminidase reveals dual lectin-like domains in addition to the catalytic domain
30. Molecular structure of a new family of ribonucleases
31. Molecular basis of sulfite oxidase deficiency from the structure of sulfite oxidase
32. AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes
33. X-ray structure of HPr kinase: A bacterial protein kinase with a P-loop nucleotide-binding domain
34. Structure of the complex of yeast adenylate kinase with the inhibitor P1,P5-di(adenosine-5′-)pentaphosphate at 2.6 Å resolution
35. Structure at 2.8 Å resolution of F1-ATPase from bovine heart mitochondria
36. Crystal structures at 2.2 Å resolution of the catalytic domains of normal ras protein and an oncogenic mutant complexed with GDP
37. Evolution of function in protein superfamilies, from a structural perspective
38. Of barn owls and bankers: A lush variety of alpha/beta hydrolases
39. The C-terminal domain of HPII catalase is a member of the type I glutamine amidotransferase superfamily
40. The small subunit of carbamoyl phosphate synthetase: Snapshots along the reaction pathway
41. Crystal structure of an intracellular protease from Pyrococcus horikoshii at 2-A resolution
42. Supersites within superfolds. Binding site similarity in the absence of homology
43. Slow- and fast-binding inhibitors of thermolysin display different modes of binding: Crystallographic analysis of extended phosphonamidate transition-state analogues
44. The bifunctional cytochrome c reductase/processing peptidase complex from plant mitochondria
45. Crystal structures of mitochondrial processing peptidase reveal the mode for specific cleavage of import signal sequences
46. Thermolysin and mitochondrial processing peptidase: How far structure-functional convergence goes