-
1
-
-
0033813317
-
Conformational changes studied by cryo-electron microscopy
-
Saibil, H. R. 2000. Conformational changes studied by cryo-electron microscopy. Nat. Struct. Biol. 7:711-714.
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 711-714
-
-
Saibil, H.R.1
-
2
-
-
0034691576
-
A ratchet-like inter-subunit reorganization of the ribosome during translocation
-
Frank, J., and R. K. Agrawal. 2000. A ratchet-like inter-subunit reorganization of the ribosome during translocation. Nature. 406: 318-322.
-
(2000)
Nature
, vol.406
, pp. 318-322
-
-
Frank, J.1
Agrawal, R.K.2
-
3
-
-
0242515749
-
Visualizing tmRNA entry into a stalled ribosome
-
Valle, M., R. Gillet, S. Kaur, A. Henne, V. Ramakrishnan, and J. Frank. 2003. Visualizing tmRNA entry into a stalled ribosome. Science. 300:127-130.
-
(2003)
Science
, vol.300
, pp. 127-130
-
-
Valle, M.1
Gillet, R.2
Kaur, S.3
Henne, A.4
Ramakrishnan, V.5
Frank, J.6
-
4
-
-
0037007149
-
Conformational flexibility of bacterial RNA polymerase
-
Darst, S. A., N. Opalka, P. Chacon, A. Polyakov, C. Richter, G. Y. Zhang, and W. Wriggers. 2002. Conformational flexibility of bacterial RNA polymerase. Proc. Natl. Acad. Sci. USA. 99:4296-4301.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 4296-4301
-
-
Darst, S.A.1
Opalka, N.2
Chacon, P.3
Polyakov, A.4
Richter, C.5
Zhang, G.Y.6
Wriggers, W.7
-
5
-
-
0035836733
-
Three-dimensional image reconstruction of dephosphorylated smooth muscle heavy meromyosin reveals asymmetry in the interaction between myosin heads and placement of subfragment 2
-
Wendt, T., D. Taylor, K. M. Trybus, and K. Taylor. 2001. Three-dimensional image reconstruction of dephosphorylated smooth muscle heavy meromyosin reveals asymmetry in the interaction between myosin heads and placement of subfragment 2. Proc. Natl. Acad. Sci. USA. 98:4361-4366.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 4361-4366
-
-
Wendt, T.1
Taylor, D.2
Trybus, K.M.3
Taylor, K.4
-
6
-
-
0035957688
-
Virus maturation involving large subunit rotations and local refolding
-
Conway, J. F., W. R. Wikoff, N. Cheng, R. L. Duda, R. W. Hendrix, J. E. Johnson, and A. C. Steven. 2001. Virus maturation involving large subunit rotations and local refolding. Science. 292:744-748.
-
(2001)
Science
, vol.292
, pp. 744-748
-
-
Conway, J.F.1
Wikoff, W.R.2
Cheng, N.3
Duda, R.L.4
Hendrix, R.W.5
Johnson, J.E.6
Steven, A.C.7
-
7
-
-
0141918780
-
Complementary approaches to structure determination of icosahedral viruses
-
Lee, K. K., and J. E. Johnson. 2003. Complementary approaches to structure determination of icosahedral viruses. Curr. Opin. Struct. Biol. 13:558-569.
-
(2003)
Curr. Opin. Struct. Biol
, vol.13
, pp. 558-569
-
-
Lee, K.K.1
Johnson, J.E.2
-
8
-
-
0032780181
-
Situs: A package for docking crystal structures into low-resolution maps from electron microscopy
-
Wriggers, W., R. A. Milligan, and J. A. McCammon. 1999. Situs: a package for docking crystal structures into low-resolution maps from electron microscopy. J. Struct. Biol. 125:185-195.
-
(1999)
J. Struct. Biol
, vol.125
, pp. 185-195
-
-
Wriggers, W.1
Milligan, R.A.2
McCammon, J.A.3
-
9
-
-
0032779888
-
Quantitative fitting of atomic models into observed densities derived by electron microscopy
-
Volkmann, N., and D. Hanein. 1999. Quantitative fitting of atomic models into observed densities derived by electron microscopy. J. Struct. Biol. 125:176-184.
-
(1999)
J. Struct. Biol
, vol.125
, pp. 176-184
-
-
Volkmann, N.1
Hanein, D.2
-
10
-
-
0033780164
-
Fitting atomic models into electron-microscopy maps
-
Rossmann, M. G. 2000. Fitting atomic models into electron-microscopy maps. Acta Crystallogr. D Biol. Crystallogr. 56:1341-1349.
-
(2000)
Acta Crystallogr. D Biol. Crystallogr
, vol.56
, pp. 1341-1349
-
-
Rossmann, M.G.1
-
11
-
-
0035783056
-
Combining electron microscopic with x-ray crystallographic structures
-
Rossmann, M. G., R. Bernal, and S. V. Pletnev. 2001. Combining electron microscopic with x-ray crystallographic structures. J. Struct. Biol. 136:190-200.
-
(2001)
J. Struct. Biol
, vol.136
, pp. 190-200
-
-
Rossmann, M.G.1
Bernal, R.2
Pletnev, S.V.3
-
12
-
-
0035906702
-
Bridging the information gap: Computational tools for intermediate resolution structure interpretation
-
Jiang, W., M. L. Baker, S. J. Ludtke, and W. Chiu. 2001. Bridging the information gap: computational tools for intermediate resolution structure interpretation. J. Mol. Biol. 308:1033-1044.
-
(2001)
J. Mol. Biol
, vol.308
, pp. 1033-1044
-
-
Jiang, W.1
Baker, M.L.2
Ludtke, S.J.3
Chiu, W.4
-
13
-
-
0036297629
-
Multi-resolution contour-based fitting of macromolecular structures
-
Chacon, P., and W. Wriggers. 2002. Multi-resolution contour-based fitting of macromolecular structures. J. Mol. Biol. 317:375-384.
-
(2002)
J. Mol. Biol
, vol.317
, pp. 375-384
-
-
Chacon, P.1
Wriggers, W.2
-
14
-
-
0033669710
-
Evidence for cleft closure in actomyosin upon ADP release
-
Volkmann, N., D. Hanein, G. Ouyang, K. M. Trybus, D. J. DeRosier, and S. Lowey. 2000. Evidence for cleft closure in actomyosin upon ADP release. Nat. Struct. Biol. 7:1147-1155.
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 1147-1155
-
-
Volkmann, N.1
Hanein, D.2
Ouyang, G.3
Trybus, K.M.4
DeRosier, D.J.5
Lowey, S.6
-
15
-
-
0347721768
-
A cryo-electron microscopic study of ribosome-bound termination factor RF2
-
Rawat, U. B. S., A. V. Zavialov, J. Sengupta, M. Valle, R. A. Grassucci, J. Linde, B. Vestergaard, M. Ehrenberg, and J. Frank. 2003. A cryo-electron microscopic study of ribosome-bound termination factor RF2. Nature. 421:87-90.
-
(2003)
Nature
, vol.421
, pp. 87-90
-
-
Rawat, U.B.S.1
Zavialov, A.V.2
Sengupta, J.3
Valle, M.4
Grassucci, R.A.5
Linde, J.6
Vestergaard, B.7
Ehrenberg, M.8
Frank, J.9
-
16
-
-
0038275890
-
Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement
-
Gao, H., J. Sengupta, M. Valle, A. Korostelev, N. Eswar, S. M. Stagg, P. Van Roey, R. K. Agrawal, S. C. Harvey, A. Sali, M. S. Chapman, and J. Frank. 2003. Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement. Cell. 113:789-801.
-
(2003)
Cell
, vol.113
, pp. 789-801
-
-
Gao, H.1
Sengupta, J.2
Valle, M.3
Korostelev, A.4
Eswar, N.5
Stagg, S.M.6
Van Roey, P.7
Agrawal, R.K.8
Harvey, S.C.9
Sali, A.10
Chapman, M.S.11
Frank, J.12
-
17
-
-
14844303319
-
Molding atomic structures into intermediate-resolution cryo-EM density maps of ribosomal complexes using real-space refinement
-
Gao, H., and J. Frank. 2005. Molding atomic structures into intermediate-resolution cryo-EM density maps of ribosomal complexes using real-space refinement. Structure. 13:401-406.
-
(2005)
Structure
, vol.13
, pp. 401-406
-
-
Gao, H.1
Frank, J.2
-
18
-
-
0035783173
-
Using Situs for flexible and rigid-body fitting of multiresolution single-molecule data
-
Wriggers, W., and S. Birmanns. 2001. Using Situs for flexible and rigid-body fitting of multiresolution single-molecule data. J. Struct. Biol. 133:193-202.
-
(2001)
J. Struct. Biol
, vol.133
, pp. 193-202
-
-
Wriggers, W.1
Birmanns, S.2
-
19
-
-
0001832403
-
Restrained real-space macromolecular atomic refinement using a new resolution-dependent electron-density function
-
Chapman, M. S. 1995. Restrained real-space macromolecular atomic refinement using a new resolution-dependent electron-density function. Acta Crystallogr. A. 51:69-80.
-
(1995)
Acta Crystallogr. A
, vol.51
, pp. 69-80
-
-
Chapman, M.S.1
-
20
-
-
0344120716
-
Low-resolution structure refinement in electron microscopy
-
Chen, J. Z., J. Fürst, M. S. Chapman, and N. Grigorieff. 2003. Low-resolution structure refinement in electron microscopy. J. Struct. Biol. 144:144-151.
-
(2003)
J. Struct. Biol
, vol.144
, pp. 144-151
-
-
Chen, J.Z.1
Fürst, J.2
Chapman, M.S.3
Grigorieff, N.4
-
21
-
-
14844311200
-
Fitting of high-resolution structures into electron microscopy reconstruction images
-
Fabiola, F., and M. S. Chapman. 2005. Fitting of high-resolution structures into electron microscopy reconstruction images. Structure. 13:389-400.
-
(2005)
Structure
, vol.13
, pp. 389-400
-
-
Fabiola, F.1
Chapman, M.S.2
-
22
-
-
33645106536
-
A structural model for the large subunit of the mammalian mitochondrial ribosome
-
Mears, J. A., M. R. Sharma, R. R. Gutell, A. S. McCook, P. E. Richardson, T. R. Caulfield, R. K. Agrawal, and S. C. Harvey. 2006. A structural model for the large subunit of the mammalian mitochondrial ribosome. J. Mol. Biol. 358:193-212.
-
(2006)
J. Mol. Biol
, vol.358
, pp. 193-212
-
-
Mears, J.A.1
Sharma, M.R.2
Gutell, R.R.3
McCook, A.S.4
Richardson, P.E.5
Caulfield, T.R.6
Agrawal, R.K.7
Harvey, S.C.8
-
23
-
-
0000785338
-
Generic rigidity percolation: The pebble game
-
Jacobs, D. J., and M. F. Thorpe. 1995. Generic rigidity percolation: the pebble game. Phys. Rev. Lett. 75:4051-4054.
-
(1995)
Phys. Rev. Lett
, vol.75
, pp. 4051-4054
-
-
Jacobs, D.J.1
Thorpe, M.F.2
-
24
-
-
0035427398
-
Protein flexibility predictions using graph theory
-
Jacobs, D. J., A. J. Rader, L. A. Kuhn, and M. F. Thorpe. 2001. Protein flexibility predictions using graph theory. Proteins. 44:150-165.
-
(2001)
Proteins
, vol.44
, pp. 150-165
-
-
Jacobs, D.J.1
Rader, A.J.2
Kuhn, L.A.3
Thorpe, M.F.4
-
25
-
-
41449099769
-
Fitting low-resolution cryo-EM maps of proteins using constrained geometric simulations
-
Jolley, C. C., S. A. Wells, P. Fromme, and M. F. Thorpe. 2008. Fitting low-resolution cryo-EM maps of proteins using constrained geometric simulations. Biophys. J. 94:1613-1621.
-
(2008)
Biophys. J
, vol.94
, pp. 1613-1621
-
-
Jolley, C.C.1
Wells, S.A.2
Fromme, P.3
Thorpe, M.F.4
-
26
-
-
12844256969
-
Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy
-
Topf, M., M. L. Baker, B. John, W. Chiu, and A. Sali. 2005. Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy. J. Struct. Biol. 149:191-203.
-
(2005)
J. Struct. Biol
, vol.149
, pp. 191-203
-
-
Topf, M.1
Baker, M.L.2
John, B.3
Chiu, W.4
Sali, A.5
-
27
-
-
33645075435
-
Refinement of protein structures by iterative comparative modeling and cryoEM density fitting
-
Topf, M., M. L. Baker, M. A. Marti-Renom, W. Chiu, and A. Sali. 2006. Refinement of protein structures by iterative comparative modeling and cryoEM density fitting. J. Mol. Biol. 357:1655-1668.
-
(2006)
J. Mol. Biol
, vol.357
, pp. 1655-1668
-
-
Topf, M.1
Baker, M.L.2
Marti-Renom, M.A.3
Chiu, W.4
Sali, A.5
-
28
-
-
38949092920
-
Protein structure fitting and refinement guided by cryo-EM density
-
Topf, M., K. Lasker, B. Webb, H. Wolfson, W. Chiu, and A. Sali. 2008. Protein structure fitting and refinement guided by cryo-EM density. Structure. 16:295-307.
-
(2008)
Structure
, vol.16
, pp. 295-307
-
-
Topf, M.1
Lasker, K.2
Webb, B.3
Wolfson, H.4
Chiu, W.5
Sali, A.6
-
29
-
-
33745813129
-
Flexible fitting in 3D-EM guided by the structural variability of protein superfamilies
-
Velazquez-Muriel, J. A., M. Valle, A. Santamaría-Pang, I. A. Kakadiaris, and J. M. Carazo. 2006. Flexible fitting in 3D-EM guided by the structural variability of protein superfamilies. Structure. 14:1115-1126.
-
(2006)
Structure
, vol.14
, pp. 1115-1126
-
-
Velazquez-Muriel, J.A.1
Valle, M.2
Santamaría-Pang, A.3
Kakadiaris, I.A.4
Carazo, J.M.5
-
30
-
-
36749078686
-
Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution
-
Schröder, G. F., A. T. Brunger, and M. Levitt. 2007. Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution. Structure. 15:1630-1641.
-
(2007)
Structure
, vol.15
, pp. 1630-1641
-
-
Schröder, G.F.1
Brunger, A.T.2
Levitt, M.3
-
31
-
-
2342518038
-
On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models
-
Delarue, M., and P. Dumas. 2004. On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models. Proc. Natl. Acad. Sci. USA. 101:6957-6962.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 6957-6962
-
-
Delarue, M.1
Dumas, P.2
-
32
-
-
1642355235
-
Flexible multiscale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis
-
Tama, F., O. Miyashita, and C. L. Brooks III. 2004. Flexible multiscale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis. J. Mol. Biol. 337:985-999.
-
(2004)
J. Mol. Biol
, vol.337
, pp. 985-999
-
-
Tama, F.1
Miyashita, O.2
Brooks III, C.L.3
-
33
-
-
4344716056
-
NMFF: Flexible high-resolution annotation of low-resolution experimental data from cryo-EM maps using normal mode analysis
-
Tama, F., O. Miyashita, and C. L. Brooks III. 2004. NMFF: flexible high-resolution annotation of low-resolution experimental data from cryo-EM maps using normal mode analysis. J. Struct. Biol. 147:315-326.
-
(2004)
J. Struct. Biol
, vol.147
, pp. 315-326
-
-
Tama, F.1
Miyashita, O.2
Brooks III, C.L.3
-
34
-
-
17044432465
-
Normal mode-based fitting of atomic structure into electron density maps: Application to sarcoplasmic reticulum Ca-ATPase
-
Hinsen, K., N. Reuter, J. Navaza, D. L. Stokes, and J. J. Lacapere. 2005. Normal mode-based fitting of atomic structure into electron density maps: application to sarcoplasmic reticulum Ca-ATPase. Biophys. J. 88:818-827.
-
(2005)
Biophys. J
, vol.88
, pp. 818-827
-
-
Hinsen, K.1
Reuter, N.2
Navaza, J.3
Stokes, D.L.4
Lacapere, J.J.5
-
35
-
-
33748351384
-
NORMA: A tool for flexible fitting of high-resolution protein structures into low-resolution electron-microscopy-derived density maps
-
Suhre, K., J. Navaza, and Y. H. Sanejouand. 2006. NORMA: a tool for flexible fitting of high-resolution protein structures into low-resolution electron-microscopy-derived density maps. Acta Crystallogr. D Biol. Crystallogr. 62:1098-1100.
-
(2006)
Acta Crystallogr. D Biol. Crystallogr
, vol.62
, pp. 1098-1100
-
-
Suhre, K.1
Navaza, J.2
Sanejouand, Y.H.3
-
36
-
-
27844444793
-
Structure of the E. coli protein-conducting channel bound to a translating ribosome
-
Mitra, K., C. Schaffitzel, T. Shaikh, F. Tama, S. Jenni, C. L. Brooks III, N. Ban, and J. Frank. 2005. Structure of the E. coli protein-conducting channel bound to a translating ribosome. Nature. 438:318-324.
-
(2005)
Nature
, vol.438
, pp. 318-324
-
-
Mitra, K.1
Schaffitzel, C.2
Shaikh, T.3
Tama, F.4
Jenni, S.5
Brooks III, C.L.6
Ban, N.7
Frank, J.8
-
37
-
-
19844377583
-
The 13 Å structure of a chaperonin GroEL-protein substrate complex by cryo-electron microscopy
-
Falke, S., F. Tama, C. L. Brooks, E. P. Gogol, and M. T. Fisher. 2005. The 13 Å structure of a chaperonin GroEL-protein substrate complex by cryo-electron microscopy. J. Mol. Biol. 348:219-230.
-
(2005)
J. Mol. Biol
, vol.348
, pp. 219-230
-
-
Falke, S.1
Tama, F.2
Brooks, C.L.3
Gogol, E.P.4
Fisher, M.T.5
-
38
-
-
33748211202
-
Model of the toxic complex of anthrax: Responsive conformational changes in both the lethal factor and the protective antigen heptamer
-
Tama, F., G. Ren, C. L. Brooks III, and A. K. Mitra 2006. Model of the toxic complex of anthrax: responsive conformational changes in both the lethal factor and the protective antigen heptamer. Protein. Sci. 15:2190-2200.
-
(2006)
Protein. Sci
, vol.15
, pp. 2190-2200
-
-
Tama, F.1
Ren, G.2
Brooks III, C.L.3
Mitra, A.K.4
-
39
-
-
44649130753
-
-
Stahlberg, H., and T. Walz. 2008. Molecular electron microscopy: state of the art and current challenges. ACS Chem. Biol. 3:268-281.
-
Stahlberg, H., and T. Walz. 2008. Molecular electron microscopy: state of the art and current challenges. ACS Chem. Biol. 3:268-281.
-
-
-
-
40
-
-
0035044995
-
Conformational change of proteins arising from normal mode calculations
-
Tama, F., and Y. H. Sanejouand. 2001. Conformational change of proteins arising from normal mode calculations. Protein Eng. 14:1-6.
-
(2001)
Protein Eng
, vol.14
, pp. 1-6
-
-
Tama, F.1
Sanejouand, Y.H.2
-
41
-
-
85031351689
-
-
Caulfield, T. R., and S. C. Harvey. 2007. Conformational fitting of atomic models to cryogenic-electron microscopy maps using Maxwell's demon molecular dynamics. 2007 Biophysical Society Meeting Abstracts. Biophys. J., Supplement, 368a, Abstract, 1735-Plat.
-
Caulfield, T. R., and S. C. Harvey. 2007. Conformational fitting of atomic models to cryogenic-electron microscopy maps using Maxwell's demon molecular dynamics. 2007 Biophysical Society Meeting Abstracts. Biophys. J., Supplement, 368a, Abstract, 1735-Plat.
-
-
-
-
42
-
-
33846100102
-
Atomic model construction of protein complexes from electron micrographs and visualization of their 3D structure using a virtual reality system
-
Noda, K., M. Nakamura, R. Nishida, Y. Yoneda, Y. Yamaguchi, Y. Tamura, H. Nakamura, and T. Yasunaga. 2006. Atomic model construction of protein complexes from electron micrographs and visualization of their 3D structure using a virtual reality system. J. Plasma Phys. 72:1037-1040.
-
(2006)
J. Plasma Phys
, vol.72
, pp. 1037-1040
-
-
Noda, K.1
Nakamura, M.2
Nishida, R.3
Yoneda, Y.4
Yamaguchi, Y.5
Tamura, Y.6
Nakamura, H.7
Yasunaga, T.8
-
43
-
-
42949089487
-
Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics
-
Trabuco, L. G., E. Villa, K. Mitra, J. Frank, and K. Schulten 2008. Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure. 16:673-683.
-
(2008)
Structure
, vol.16
, pp. 673-683
-
-
Trabuco, L.G.1
Villa, E.2
Mitra, K.3
Frank, J.4
Schulten, K.5
-
44
-
-
0028455053
-
Targeted molecular dynamics: A new approach for searching pathways of conformational transitions
-
Schlitter, J., M. Engels, and P. Krüger. 1994. Targeted molecular dynamics: a new approach for searching pathways of conformational transitions. J. Mol. Graph. 12:84-89.
-
(1994)
J. Mol. Graph
, vol.12
, pp. 84-89
-
-
Schlitter, J.1
Engels, M.2
Krüger, P.3
-
45
-
-
0034665864
-
A dynamic model for the allosteric mechanism of GroEL
-
Ma, J., P. B. Sigler, Z. Xu, and M. Karplus. 2000. A dynamic model for the allosteric mechanism of GroEL. J. Mol. Biol. 302:303-313.
-
(2000)
J. Mol. Biol
, vol.302
, pp. 303-313
-
-
Ma, J.1
Sigler, P.B.2
Xu, Z.3
Karplus, M.4
-
46
-
-
0035312645
-
Steered molecular dynamics and mechanical functions of proteins
-
Isralewitz, B., M. Gao, and K. Schulten. 2001. Steered molecular dynamics and mechanical functions of proteins. Curr. Opin. Struct. Biol. 11:224-230.
-
(2001)
Curr. Opin. Struct. Biol
, vol.11
, pp. 224-230
-
-
Isralewitz, B.1
Gao, M.2
Schulten, K.3
-
47
-
-
0033573912
-
Forced unfolding of the fibronectin type III module reveals a tensile molecular recognition switch
-
Krammer, A., H. Lu, B. Isralewitz, K. Schulten, and V. Vogel. 1999. Forced unfolding of the fibronectin type III module reveals a tensile molecular recognition switch. Proc. Natl. Acad. Sci. USA. 96:1351-1356.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 1351-1356
-
-
Krammer, A.1
Lu, H.2
Isralewitz, B.3
Schulten, K.4
Vogel, V.5
-
48
-
-
27644502679
-
Simulating movement of tRNA into the ribosome during decoding
-
Sanbonmatsu, K. Y., S. Joseph, and C. S. Tung. 2005. Simulating movement of tRNA into the ribosome during decoding. Proc. Natl. Acad. Sci. USA. 102:15854-15859.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15854-15859
-
-
Sanbonmatsu, K.Y.1
Joseph, S.2
Tung, C.S.3
-
49
-
-
23444454552
-
The Amber biomolecular simulation programs
-
Case, D. A., T. E. Cheatham, T. Darden, H. Gohlke, R. Luo, K. M. Merz, A. Onufriev, C. Simmerling, B. Wang, and R. J. Woods. 2005. The Amber biomolecular simulation programs. J. Comput. Chem. 26: 1668-1688.
-
(2005)
J. Comput. Chem
, vol.26
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
Merz, K.M.6
Onufriev, A.7
Simmerling, C.8
Wang, B.9
Woods, R.J.10
-
50
-
-
0029011701
-
A 2nd generation force-field for the simulation of proteins, nucleic acids, and organic molecules
-
Cornell, W. D., P. Cieplak, C. I. Bayly, I. R. Gould, K. M. Merz, D. M. Ferguson, D. C. Spellmeyer, T. Fox, J. W. Caldwell, and P. A. Kollman. 1995. A 2nd generation force-field for the simulation of proteins, nucleic acids, and organic molecules. J. Am. Chem. Soc. 117:5179-5197.
-
(1995)
J. Am. Chem. Soc
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
51
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W., and C. Sander. 1983. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers. 22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
52
-
-
0032530836
-
A database of macromolecular motions
-
Gerstein, M., and W. Krebs. 1998. A database of macromolecular motions. Nucleic Acids Res. 26:4280-4290.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 4280-4290
-
-
Gerstein, M.1
Krebs, W.2
-
53
-
-
0000009443
-
Rapid comparison of protein structures
-
McLachlan, A. D. 1982. Rapid comparison of protein structures. Acta Crystallogr. A. 38:871-873.
-
(1982)
Acta Crystallogr. A
, vol.38
, pp. 871-873
-
-
McLachlan, A.D.1
-
54
-
-
36749079267
-
Transfer RNA in the hybrid P/E state: Correlating molecular dynamics simulations with cryo-EM data
-
Li, W., and J. Frank. 2007. Transfer RNA in the hybrid P/E state: correlating molecular dynamics simulations with cryo-EM data. Proc. Natl. Acad. Sci. USA. 104:16540-16545.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 16540-16545
-
-
Li, W.1
Frank, J.2
-
55
-
-
85031352151
-
-
Reference deleted in proof
-
Reference deleted in proof.
-
-
-
-
56
-
-
0037963475
-
Locking and unlocking of ribosomal motions
-
Valle, M., A. Zavialov, J. Sengupta, U. Rawat, M. Ehrenberg, and J. Frank. 2003. Locking and unlocking of ribosomal motions. Cell. 114:123-134.
-
(2003)
Cell
, vol.114
, pp. 123-134
-
-
Valle, M.1
Zavialov, A.2
Sengupta, J.3
Rawat, U.4
Ehrenberg, M.5
Frank, J.6
-
57
-
-
0034602449
-
Structure of a mutant EF-G reveals domain III and possibly the fusidic acid binding site
-
Laurberg, M., O. Kristensen, K. Martemyanov, A. T. Gudkov, I. Nagaev, D. Hughes, and A. Liljas. 2000. Structure of a mutant EF-G reveals domain III and possibly the fusidic acid binding site. J. Mol. Biol. 303:593-603.
-
(2000)
J. Mol. Biol
, vol.303
, pp. 593-603
-
-
Laurberg, M.1
Kristensen, O.2
Martemyanov, K.3
Gudkov, A.T.4
Nagaev, I.5
Hughes, D.6
Liljas, A.7
-
58
-
-
0033776245
-
Docking structures of domains into maps from cryo-electron microscopy using local correlation
-
Roseman, A. M. 2000. Docking structures of domains into maps from cryo-electron microscopy using local correlation. Acta Crystallogr. D Biol. Crystallogr. 56:1332-1340.
-
(2000)
Acta Crystallogr. D Biol. Crystallogr
, vol.56
, pp. 1332-1340
-
-
Roseman, A.M.1
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