The 13 Å structure of a chaperonin GroEL-protein substrate complex by cryo-electron microscopy

Journal of Molecular Biology

Volumn 348, Issue 1, 2005, Pages 219-230

  Falke, Scott ^a,d   Tama, Florence ^b   Brooks III, Charles L ^b   Gogol, Edward P ^c   Fisher, Mark T ^a  

^a UNIVERSITY OF KANSAS SCHOOL OF MEDICINE   (United States)

^b SCRIPPS RESEARCH INSTITUTE   (United States)

^c UNIVERSITY OF MISSOURI KANSAS CITY   (United States)

^d WILLIAM JEWELL COLLEGE   (United States)

Author keywords

Chaperonin; Electron microscopy; GroEL; Protein folding

Indexed keywords

ADENOSINE TRIPHOSPHATE; CHAPERONIN; GLUTAMATE AMMONIA LIGASE; MULTIPROTEIN COMPLEX;

ARTICLE; CRYOELECTRON MICROSCOPY; DYNAMICS; MOLECULAR BIOLOGY; MOLECULAR MODEL; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN STRUCTURE; ROTATION; STRUCTURE ANALYSIS; X RAY CRYSTALLOGRAPHY; CHEMICAL STRUCTURE; CHEMISTRY; METABOLISM; PROTEIN CONFORMATION; ULTRASTRUCTURE;

CRYOELECTRON MICROSCOPY; GLUTAMATE-AMMONIA LIGASE; GROEL PROTEIN; MODELS, MOLECULAR; MULTIPROTEIN COMPLEXES; PROTEIN BINDING; PROTEIN CONFORMATION;

EID: 19844377583     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2005.02.027     Document Type: Article

References (27)

1. A. Horovitz, Y. Fridmann, G. Kafri, and O. Yifrach Review: allostery in chaperonins J. Struct. Biol. 135 2001 104 114
2. M.J. Todd, P.V. Viitanen, and G.H. Lorimer Dynamics of the chaperonin ATPase cycle: implications for facilitated protein folding Science 265 1994 659 666
3. O. Yifrach, and A. Horovitz Nested cooperativity in the ATPase activity of the oligomeric chaperonin GroEL Biochemistry 34 1995 5303 5308
4. O. Yifrach, and A. Horovitz Allosteric control by ATP of non-folded protein binding to GroEL J. Mol. Biol. 255 1996 356 361
5. H.R. Saibil, A.L. Horwich, and W.A. Fenton Allostery and protein substrate conformational change during GroEL/GroES-mediated protein folding Advan. Protein Chem. 19 2001 45 72
6. H.S. Rye, A.M. Roseman, K. Furtak, W.A. Fenton, H.R. Saibil, and A.L. Horwich GroEL-GroES cycling: ATP and non-native polypeptide direct alternation of folding-active rings Cell 97 1999 325 338
7. E. Inbar, and A. Horovitz GroES promotes the T to R transition of the GroEL ring distal to GroES in the GroEL-GroES complex Biochemistry 36 1997 12276 12281
8. T.K. Chaudhuri, G.W. Farr, W.A. Fenton, S. Rospert, and A.L. Horwich GroEL/GroES-mediated folding of a protein too large to be encapsulated Cell 107 2001 235 246
9. G.W. Farr, W.A. Fenton, T.K. Chaudhuri, D.K. Clare, H.R. Saibil, and A.L. Horwich Folding with and without encapsulation by cis- and trans-only GroEL-GroES complexes EMBO J. 22 2003 3220 3230
10. C. Chaudhry, G.W. Farr, M.J. Todd, H.S. Rye, A.T. Brunger, and P.D. Adams Role of the gamma-phosphate of ATP in triggering protein folding by GroEL-GroES: function, structure and energetics EMBO J. 22 2003 4877 4887
11. F. Tama, O. Miyashita, and C.L. Brooks 3rd Flexible multi-scale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis J. Mol. Biol. 337 2004 985 999
12. J. Wang, and L. Chen Domain motions in GroEL upon binding of an oligopeptide J. Mol. Biol. 334 2003 489 499
13. S.F. Falke, M.T. Fisher, and E.G. Gogol Analysis of GroEL-glutamine synthetase complexes by electron microscopy J. Mol. Biol. 308 2001 569 577
14. S.F. Falke, M.T. Fisher, and E.G. Gogol Classification and reconstruction of a heterogeneous set of electron microscopic images: a case study of GroEL-substrate complexes J. Struct. Biol. 133 2001 203 213
15. K. Braig, Z. Otwinowski, R. Hegde, D. Boisvert, A. Joahimiak, A.L. Horwich, and P.B. Sigler Crystal structure of GroEL at 2.8 Å Nature 371 1994 578 586
16. F. Tama, M. Valle, J. Frank, and C.L. Brooks 3rd Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy Proc. Natl Acad. Sci. USA 100 2003 9319 9323
17. F. Tama, and Y.H. Sanejouand Conformational change of proteins arising from normal mode calculations Protein Eng. 14 2001 1 6
18. A.M. Roseman, N.A. Ranson, B. Gowen, S.D. Fuller, and H.R. Saibil Structures of unliganded and ATP-bound states of the Escherichia coli chaperonin GroEL by cryoelectron microscopy J. Struct. Biol. 135 2001 115 125
19. N.A. Ranson, G.W. Farr, A.M. Roseman, B. Gowen, W.A. Fenton, A.L. Horwich, and H.R. Saibil ATP-bound states of GroEL captured by cryo-electron microscopy Cell 107 2001 869 879
20. S.J. Lutke, J. Jakana, J.-L. Song, D.L. Chuang, and W. Chiu A 11.5 Å single particle reconstruction of GroEL using EMAN J. Mol. Biol. 314 2001 253 262
21. Z. Xu, A.L. Horwich, and P.B. Sigler The crystal structure of the asymmetric GroEL-GroES-(ADP)7 chaperonin complex Nature 388 1997 741 750
22. W.A. Fenton, Y. Kashi, K. Furtak, and A.L. Horwich Functional analysis of the chaperonin GroEL: identification of residues involved in polypeptide binding and release Nature 371 1994 614 619
23. J. Frank, M. Radermacher, P. Penczek, J. Zhu, Y. Li, M. Ladjadj, and A. Leith SPIDER and WEB: processing and visualization of images in 3D electron microscopy and other fields J. Struct. Biol. 116 1996 190 199
24. M.M. Tirion Large amplitude elastic motions in proteins from a single parameter, atomic analysis Phys. Rev. Letters 77 1996 1905 1908
25. F. Tama, F.X. Gadea, O. Marques, and Y.H. Sanejouand Building-block approach for determining low-frequency normal modes of macromolecules Proteins: Struct. Funct. Genet. 41 2000 1 7
26. B.R. Brooks, R.E. Bruccoleri, B.D. Olafson, D.J. States, S. Swaminathan, and M. Karplus CHARMM: a program for macromolecular energy, minimization, and dynamics calculations J. Comp. Chem. 4 1983 187 217
27. C.C. Huang, G.S. Couch, E.F. Pettersen, and T.E. Ferrin Chimera: an extensible molecular modeling application constructed using standard components Pacific Symp. Biocomput. 1 1996 724 728