-
1
-
-
0034406521
-
Macromolecular electron microscopy in the era of structural genomics
-
Baumeister W., and Steven A.C. Macromolecular electron microscopy in the era of structural genomics. Trends Biochem. Sci. 25 (2000) 624-631
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 624-631
-
-
Baumeister, W.1
Steven, A.C.2
-
2
-
-
0037406075
-
Cyclic coordinate descent: a robotics algorithm for protein loop closure
-
Canutescu A.A., and Dunbrack Jr. R.L. Cyclic coordinate descent: a robotics algorithm for protein loop closure. Protein Sci. 12 (2003) 963-972
-
(2003)
Protein Sci.
, vol.12
, pp. 963-972
-
-
Canutescu, A.A.1
Dunbrack Jr., R.L.2
-
3
-
-
0036297629
-
Multi-resolution contour-based fitting of macromolecular structures
-
Chacon P., and Wriggers W. Multi-resolution contour-based fitting of macromolecular structures. J. Mol. Biol. 317 (2002) 375-384
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 375-384
-
-
Chacon, P.1
Wriggers, W.2
-
5
-
-
0028059544
-
Three-dimensional structure of the ribosomal translocase: elongation factor G from Thermus thermophilus
-
Evarsson A., Brazhnikov E., Garber M., Zheltonosova J., Chirgadze Y., al-Karadaghi S., Svensson L.A., and Liljas A. Three-dimensional structure of the ribosomal translocase: elongation factor G from Thermus thermophilus. EMBO J. 13 (1994) 3669-3677
-
(1994)
EMBO J.
, vol.13
, pp. 3669-3677
-
-
Evarsson, A.1
Brazhnikov, E.2
Garber, M.3
Zheltonosova, J.4
Chirgadze, Y.5
al-Karadaghi, S.6
Svensson, L.A.7
Liljas, A.8
-
6
-
-
14844311200
-
Fitting of high-resolution structures into electron microscopy reconstruction images
-
Fabiola F., and Chapman M.S. Fitting of high-resolution structures into electron microscopy reconstruction images. Structure 13 (2005) 389-400
-
(2005)
Structure
, vol.13
, pp. 389-400
-
-
Fabiola, F.1
Chapman, M.S.2
-
8
-
-
0035906702
-
Bridging the information gap: computational tools for intermediate resolution structure interpretation
-
Jiang W., Baker M.L., Ludtke S.J., and Chiu W. Bridging the information gap: computational tools for intermediate resolution structure interpretation. J. Mol. Biol. 308 (2001) 1033-1044
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 1033-1044
-
-
Jiang, W.1
Baker, M.L.2
Ludtke, S.J.3
Chiu, W.4
-
9
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones T.A., Zou J.Y., Cowan S.W., and Kjeldgaard. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47 (1991) 110-119
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard4
-
10
-
-
0002404088
-
On the orthogonal transformation used for structural comparisons
-
Kearsley S.K. On the orthogonal transformation used for structural comparisons. Acta Crystallogr. A 45 (1989) 208
-
(1989)
Acta Crystallogr. A
, vol.45
, pp. 208
-
-
Kearsley, S.K.1
-
11
-
-
0041566879
-
Fast rotational matching of rigid bodies by fast Fourier transform acceleration of five degrees of freedom
-
Kovacs J.A., Chacon P., Cong Y., Metwally E., and Wriggers W. Fast rotational matching of rigid bodies by fast Fourier transform acceleration of five degrees of freedom. Acta Crystallogr. D Biol. Crystallogr. 59 (2003) 1371-1376
-
(2003)
Acta Crystallogr. D Biol. Crystallogr.
, vol.59
, pp. 1371-1376
-
-
Kovacs, J.A.1
Chacon, P.2
Cong, Y.3
Metwally, E.4
Wriggers, W.5
-
12
-
-
0034602449
-
Structure of a mutant EF-G reveals domain III and possibly the fusidic acid binding site
-
Laurberg M., Kristensen O., Martemyanov K., Gudkov A.T., Nagaev I., Hughes D., and Liljas A. Structure of a mutant EF-G reveals domain III and possibly the fusidic acid binding site. J. Mol. Biol. 303 (2000) 593-603
-
(2000)
J. Mol. Biol.
, vol.303
, pp. 593-603
-
-
Laurberg, M.1
Kristensen, O.2
Martemyanov, K.3
Gudkov, A.T.4
Nagaev, I.5
Hughes, D.6
Liljas, A.7
-
13
-
-
0032897075
-
Efficient anisotropic refinement of macromolecular structures using FFT
-
Murshudov G.N., Vagin A.A., Lebedev A., Wilson K.S., and Dodson E.J. Efficient anisotropic refinement of macromolecular structures using FFT. Acta Crystallogr. D Biol. Crystallogr. 55 (1999) 247-255
-
(1999)
Acta Crystallogr. D Biol. Crystallogr.
, vol.55
, pp. 247-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Lebedev, A.3
Wilson, K.S.4
Dodson, E.J.5
-
14
-
-
0028961335
-
SCOP: a structural classification of proteins database for the investigation of sequences and structures
-
Murzin A.G., Brenner S.E., Hubbard T., and Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247 (1995) 536-540
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
16
-
-
0036839162
-
MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison
-
Ortiz A.R., Strauss C.E., and Olmea O. MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison. Protein Sci. 11 (2002) 2606-2621
-
(2002)
Protein Sci.
, vol.11
, pp. 2606-2621
-
-
Ortiz, A.R.1
Strauss, C.E.2
Olmea, O.3
-
17
-
-
4444221565
-
UCSF Chimera-a visualization system for exploratory research and analysis
-
Pettersen E.F., Goddard T.D., Huang C.C., Couch G.S., Greenblatt D.M., Meng E.C., and Ferrin T.E. UCSF Chimera-a visualization system for exploratory research and analysis. J. Comput. Chem. 25 (2004) 1605-1612
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
18
-
-
0004161838
-
-
University Press, Cambridge, UK
-
Press W., Flannery B., Teukolsky S., and Vetterling W. Numerical Recipes in C (1988), University Press, Cambridge, UK
-
(1988)
Numerical Recipes in C
-
-
Press, W.1
Flannery, B.2
Teukolsky, S.3
Vetterling, W.4
-
19
-
-
7444236378
-
Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation
-
Qian B., Ortiz A.R., and Baker D. Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation. Proc. Natl. Acad. Sci. USA 101 (2004) 15346-15351
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 15346-15351
-
-
Qian, B.1
Ortiz, A.R.2
Baker, D.3
-
20
-
-
0033780164
-
Fitting atomic models into electron-microscopy maps
-
Rossmann M.G. Fitting atomic models into electron-microscopy maps. Acta Crystallogr. D Biol. Crystallogr. 56 (2000) 1341-1349
-
(2000)
Acta Crystallogr. D Biol. Crystallogr.
, vol.56
, pp. 1341-1349
-
-
Rossmann, M.G.1
-
21
-
-
1642355235
-
Flexible multi-scale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis
-
Tama F., Miyashita O., and Brooks III C.L. Flexible multi-scale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis. J. Mol. Biol. 337 (2004) 985-999
-
(2004)
J. Mol. Biol.
, vol.337
, pp. 985-999
-
-
Tama, F.1
Miyashita, O.2
Brooks III, C.L.3
-
22
-
-
25844459522
-
Combining electron microscopy and comparative protein structure modeling
-
Topf M., and Sali A. Combining electron microscopy and comparative protein structure modeling. Curr. Opin. Struct. Biol. 15 (2005) 1-8
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 1-8
-
-
Topf, M.1
Sali, A.2
-
23
-
-
12844256969
-
Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy
-
Topf M., Baker M.L., John B., Chiu W., and Sali A. Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy. J. Struct. Biol. 149 (2005) 191-203
-
(2005)
J. Struct. Biol.
, vol.149
, pp. 191-203
-
-
Topf, M.1
Baker, M.L.2
John, B.3
Chiu, W.4
Sali, A.5
-
24
-
-
33645075435
-
Refinement of protein structures by iterative comparative modeling and cryoEM density fitting
-
Topf M., Baker M.L., Marti Renom M.A., Chiu W., and Sali A. Refinement of protein structures by iterative comparative modeling and cryoEM density fitting. J. Mol. Biol. 357 (2006) 1655-1668
-
(2006)
J. Mol. Biol.
, vol.357
, pp. 1655-1668
-
-
Topf, M.1
Baker, M.L.2
Marti Renom, M.A.3
Chiu, W.4
Sali, A.5
-
25
-
-
0037963475
-
Locking and unlocking of ribosomal motions
-
Valle M., Zavialov A., Sengupta J., Rawat U., Ehrenberg M., and Frank J. Locking and unlocking of ribosomal motions. Cell 114 (2003) 123-134
-
(2003)
Cell
, vol.114
, pp. 123-134
-
-
Valle, M.1
Zavialov, A.2
Sengupta, J.3
Rawat, U.4
Ehrenberg, M.5
Frank, J.6
-
27
-
-
0032779888
-
Quantitative fitting of atomic models into observed densities derived by electron microscopy
-
Volkmann N., and Hanein D. Quantitative fitting of atomic models into observed densities derived by electron microscopy. J. Struct. Biol. 125 (1999) 176-184
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 176-184
-
-
Volkmann, N.1
Hanein, D.2
-
28
-
-
0032498266
-
Mapping the position of translational elongation factor EF-G in the ribosome by directed hydroxyl radical probing
-
Wilson K.S., and Noller H.F. Mapping the position of translational elongation factor EF-G in the ribosome by directed hydroxyl radical probing. Cell 92 (1998) 131-139
-
(1998)
Cell
, vol.92
, pp. 131-139
-
-
Wilson, K.S.1
Noller, H.F.2
-
29
-
-
0035783173
-
Using situs for flexible and rigid-body fitting of multiresolution single-molecule data
-
Wriggers W., and Birmanns S. Using situs for flexible and rigid-body fitting of multiresolution single-molecule data. J. Struct. Biol. 133 (2001) 193-202
-
(2001)
J. Struct. Biol.
, vol.133
, pp. 193-202
-
-
Wriggers, W.1
Birmanns, S.2
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