-
1
-
-
0032489015
-
The cell as a collection of protein machines: Preparing the next generation of molecular biologists
-
B. Alberts The cell as a collection of protein machines: preparing the next generation of molecular biologists Cell 92 1998 291 294
-
(1998)
Cell
, vol.92
, pp. 291-294
-
-
Alberts, B.1
-
2
-
-
0035812694
-
Protein structure prediction and structural genomics
-
D. Baker, and A. Sali Protein structure prediction and structural genomics Science 294 2001 93 96
-
(2001)
Science
, vol.294
, pp. 93-96
-
-
Baker, D.1
Sali, A.2
-
3
-
-
0035798359
-
Architecture of the protein-conducting channel associated with the translating 80S ribosome
-
R. Beckmann, C.M. Spahn, N. Eswar, J. Helmers, P.A. Penczek, A. Sali, J. Frank, and G. Blobel Architecture of the protein-conducting channel associated with the translating 80S ribosome Cell 107 2001 361 372
-
(2001)
Cell
, vol.107
, pp. 361-372
-
-
Beckmann, R.1
Spahn, C.M.2
Eswar, N.3
Helmers, J.4
Penczek, P.A.5
Sali, A.6
Frank, J.7
Blobel, G.8
-
4
-
-
0029143458
-
Three-dimensional location of the main immunogenic region of the acetylcholine receptor
-
R. Beroukhim, and N. Unwin Three-dimensional location of the main immunogenic region of the acetylcholine receptor Neuron 15 1995 323 331
-
(1995)
Neuron
, vol.15
, pp. 323-331
-
-
Beroukhim, R.1
Unwin, N.2
-
5
-
-
0037450631
-
Structure of the herpesvirus major capsid protein
-
B.R. Bowman, M.L. Baker, F.J. Rixon, W. Chiu, and F.A. Quiocho Structure of the herpesvirus major capsid protein EMBO J. 22 2003 757 765
-
(2003)
EMBO J.
, vol.22
, pp. 757-765
-
-
Bowman, B.R.1
Baker, M.L.2
Rixon, F.J.3
Chiu, W.4
Quiocho, F.A.5
-
6
-
-
0000991642
-
Harmonic dynamics of proteins: Normal modes and fluctuations in bovine pancreatic trypsin inhibitor
-
B. Brooks, and M. Karplus Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor Proc. Natl. Acad. Sci. USA 80 1983 6571 6575
-
(1983)
Proc. Natl. Acad. Sci. USA
, vol.80
, pp. 6571-6575
-
-
Brooks, B.1
Karplus, M.2
-
8
-
-
1942521664
-
Fast fitting of atomic structures to low-resolution electron density maps by surface overlap maximization
-
H. Ceulemans, and R.B. Russell Fast fitting of atomic structures to low-resolution electron density maps by surface overlap maximization J. Mol. Biol. 338 2004 783 793
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 783-793
-
-
Ceulemans, H.1
Russell, R.B.2
-
9
-
-
0036297629
-
Multi-resolution contour-based fitting of macromolecular structures
-
P. Chacon, and W. Wriggers Multi-resolution contour-based fitting of macromolecular structures J. Mol. Biol. 317 2002 375 384
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 375-384
-
-
Chacon, P.1
Wriggers, W.2
-
10
-
-
0028919758
-
Nucleocapsid and glycoprotein organization in an enveloped virus
-
R.H. Cheng, R.J. Kuhn, N.H. Olson, M.G. Rossmann, H.K. Choi, T.J. Smith, and T.S. Baker Nucleocapsid and glycoprotein organization in an enveloped virus Cell 80 1995 621 630
-
(1995)
Cell
, vol.80
, pp. 621-630
-
-
Cheng, R.H.1
Kuhn, R.J.2
Olson, N.H.3
Rossmann, M.G.4
Choi, H.K.5
Smith, T.J.6
Baker, T.S.7
-
11
-
-
0036535896
-
Deriving folds of macromolecular complexes through electron cryomicroscopy and bioinformatics approaches
-
W. Chiu, M.L. Baker, W. Jiang, and Z.H. Zhou Deriving folds of macromolecular complexes through electron cryomicroscopy and bioinformatics approaches Curr. Opin. Struct. Biol. 12 2002 263 269
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 263-269
-
-
Chiu, W.1
Baker, M.L.2
Jiang, W.3
Zhou, Z.H.4
-
12
-
-
0033810049
-
Modeling of loops in protein structures
-
A. Fiser, R.K. Do, and A. Sali Modeling of loops in protein structures Protein Sci. 9 2000 1753 1773
-
(2000)
Protein Sci.
, vol.9
, pp. 1753-1773
-
-
Fiser, A.1
Do, R.K.2
Sali, A.3
-
13
-
-
0036089703
-
Single-particle imaging of macromolecules by cryo-electron microscopy
-
J. Frank Single-particle imaging of macromolecules by cryo-electron microscopy Annu. Rev. Biophys. Biomol. Struct. 31 2002 303 319
-
(2002)
Annu. Rev. Biophys. Biomol. Struct.
, vol.31
, pp. 303-319
-
-
Frank, J.1
-
14
-
-
0038275890
-
Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement
-
H. Gao, J. Sengupta, M. Valle, A. Korostelev, N. Eswar, S.M. Stagg, P. Van Roey, R.K. Agrawal, S.C. Harvey, A. Sali, M.S. Chapman, and J. Frank Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement Cell 113 2003 789 801
-
(2003)
Cell
, vol.113
, pp. 789-801
-
-
Gao, H.1
Sengupta, J.2
Valle, M.3
Korostelev, A.4
Eswar, N.5
Stagg, S.M.6
Van Roey, P.7
Agrawal, R.K.8
Harvey, S.C.9
Sali, A.10
Chapman, M.S.11
Frank, J.12
-
15
-
-
0020771265
-
Dynamics of a small globular protein in terms of low-frequency vibrational modes
-
N. Go, T. Noguti, and T. Nishikawa Dynamics of a small globular protein in terms of low-frequency vibrational modes Proc. Natl. Acad. Sci. USA 80 1983 3696 3700
-
(1983)
Proc. Natl. Acad. Sci. USA
, vol.80
, pp. 3696-3700
-
-
Go, N.1
Noguti, T.2
Nishikawa, T.3
-
16
-
-
0038670209
-
Molecular architecture of the multiprotein splicing factor SF3b
-
M.M. Golas, B. Sander, C.L. Will, R. Luhrmann, and H. Stark Molecular architecture of the multiprotein splicing factor SF3b Science 300 2003 980 984
-
(2003)
Science
, vol.300
, pp. 980-984
-
-
Golas, M.M.1
Sander, B.2
Will, C.L.3
Luhrmann, R.4
Stark, H.5
-
17
-
-
0031571162
-
An atomic model of the outer layer of the bluetongue virus core derived from X-ray crystallography and electron cryomicroscopy
-
J.M. Grimes, J. Jakana, M. Ghosh, A.K. Basak, P. Roy, W. Chiu, D.I. Stuart, and B.V. Prasad An atomic model of the outer layer of the bluetongue virus core derived from X-ray crystallography and electron cryomicroscopy Structure 5 1997 885 893
-
(1997)
Structure
, vol.5
, pp. 885-893
-
-
Grimes, J.M.1
Jakana, J.2
Ghosh, M.3
Basak, A.K.4
Roy, P.5
Chiu, W.6
Stuart, D.I.7
Prasad, B.V.8
-
18
-
-
0030007379
-
Structure of a neutralizing antibody bound bivalently to human rhinovirus 2
-
E.A. Hewat, and D. Blaas Structure of a neutralizing antibody bound bivalently to human rhinovirus 2 EMBO J. 15 1996 1515 1523
-
(1996)
EMBO J.
, vol.15
, pp. 1515-1523
-
-
Hewat, E.A.1
Blaas, D.2
-
19
-
-
0031967887
-
Structure of a neutralizing antibody bound monovalently to human rhinovirus 2
-
E.A. Hewat, T.C. Marlovits, and D. Blaas Structure of a neutralizing antibody bound monovalently to human rhinovirus 2 J. Virol. 72 1998 4396 4402
-
(1998)
J. Virol.
, vol.72
, pp. 4396-4402
-
-
Hewat, E.A.1
Marlovits, T.C.2
Blaas, D.3
-
20
-
-
0032550175
-
Image reconstructions of microtubules decorated with monomeric and dimeric kinesins: Comparison with X-ray structure and implications for motility
-
A. Hoenger, S. Sack, M. Thormahlen, A. Marx, J. Muller, H. Gross, and E. Mandelkow Image reconstructions of microtubules decorated with monomeric and dimeric kinesins: comparison with X-ray structure and implications for motility J. Cell Biol. 141 1998 419 430
-
(1998)
J. Cell Biol.
, vol.141
, pp. 419-430
-
-
Hoenger, A.1
Sack, S.2
Thormahlen, M.3
Marx, A.4
Muller, J.5
Gross, H.6
Mandelkow, E.7
-
21
-
-
12844260161
-
Comparative protein structure modeling and its applications to drug discovery
-
M. Jacobson, and A. Sali Comparative protein structure modeling and its applications to drug discovery Annu. Rev. Med. Chem. 39 2004 259 276
-
(2004)
Annu. Rev. Med. Chem.
, vol.39
, pp. 259-276
-
-
Jacobson, M.1
Sali, A.2
-
22
-
-
0035906702
-
Bridging the information gap: Computational tools for intermediate resolution structure interpretation
-
W. Jiang, M.L. Baker, S.J. Ludtke, and W. Chiu Bridging the information gap: computational tools for intermediate resolution structure interpretation J. Mol. Biol. 308 2001 1033 1044
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 1033-1044
-
-
Jiang, W.1
Baker, M.L.2
Ludtke, S.J.3
Chiu, W.4
-
23
-
-
0037313264
-
Coat protein fold and maturation transition of bacteriophage P22 seen at subnanometer resolutions
-
W. Jiang, Z. Li, Z. Zhang, M.L. Baker, P.E. Prevelige Jr., and W. Chiu Coat protein fold and maturation transition of bacteriophage P22 seen at subnanometer resolutions Nat. Struct. Biol. 10 2003 131 135
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 131-135
-
-
Jiang, W.1
Li, Z.2
Zhang, Z.3
Baker, M.L.4
Prevelige Jr., P.E.5
Chiu, W.6
-
24
-
-
0141978673
-
Comparative protein structure modeling by iterative alignment, model building and model assessment
-
B. John, and A. Sali Comparative protein structure modeling by iterative alignment, model building and model assessment Nucleic Acids Res. 31 2003 3982 3992
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3982-3992
-
-
John, B.1
Sali, A.2
-
25
-
-
0033571522
-
Structural studies of two rhinovirus serotypes complexed with fragments of their cellular receptor
-
P.R. Kolatkar, J. Bella, N.H. Olson, C.M. Bator, T.S. Baker, and M.G. Rossmann Structural studies of two rhinovirus serotypes complexed with fragments of their cellular receptor EMBO J. 18 1999 6249 6259
-
(1999)
EMBO J.
, vol.18
, pp. 6249-6259
-
-
Kolatkar, P.R.1
Bella, J.2
Olson, N.H.3
Bator, C.M.4
Baker, T.S.5
Rossmann, M.G.6
-
26
-
-
0041507094
-
A structural-informatics approach for mining beta-sheets: Locating sheets in intermediate-resolution density maps
-
Y. Kong, and J. Ma A structural-informatics approach for mining beta-sheets: locating sheets in intermediate-resolution density maps J. Mol. Biol. 332 2003 399 413
-
(2003)
J. Mol. Biol.
, vol.332
, pp. 399-413
-
-
Kong, Y.1
Ma, J.2
-
27
-
-
2342538953
-
A structural-informatics approach for tracing beta-sheets: Building pseudo-C(alpha) traces for beta-strands in intermediate-resolution density maps
-
Y. Kong, X. Zhang, T.S. Baker, and J. Ma A structural-informatics approach for tracing beta-sheets: building pseudo-C(alpha) traces for beta-strands in intermediate-resolution density maps J. Mol. Biol. 339 2004 117 130
-
(2004)
J. Mol. Biol.
, vol.339
, pp. 117-130
-
-
Kong, Y.1
Zhang, X.2
Baker, T.S.3
Ma, J.4
-
28
-
-
0041819526
-
Three-dimensional structure of bacteriophage T4 baseplate
-
V.A. Kostyuchenko, P.G. Leiman, P.R. Chipman, S. Kanamaru, M.J. van Raaij, F. Arisaka, V.V. Mesyanzhinov, and M.G. Rossmann Three-dimensional structure of bacteriophage T4 baseplate Nat. Struct. Biol. 10 2003 688 693
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 688-693
-
-
Kostyuchenko, V.A.1
Leiman, P.G.2
Chipman, P.R.3
Kanamaru, S.4
Van Raaij, M.J.5
Arisaka, F.6
Mesyanzhinov, V.V.7
Rossmann, M.G.8
-
29
-
-
0017309766
-
Structural patterns in globular proteins
-
M. Levitt, and C. Chothia Structural patterns in globular proteins Nature 261 1976 552 558
-
(1976)
Nature
, vol.261
, pp. 552-558
-
-
Levitt, M.1
Chothia, C.2
-
30
-
-
0022419152
-
Protein normal-mode dynamics: Trypsin inhibitor, crambin, ribonuclease and lysozyme
-
M. Levitt, C. Sander, and P.S. Stern Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease and lysozyme J. Mol. Biol. 181 1985 423 447
-
(1985)
J. Mol. Biol.
, vol.181
, pp. 423-447
-
-
Levitt, M.1
Sander, C.2
Stern, P.S.3
-
31
-
-
0033377664
-
EMAN: Semiautomated software for high-resolution single-particle reconstructions
-
S.J. Ludtke, P.R. Baldwin, and W. Chiu EMAN: semiautomated software for high-resolution single-particle reconstructions J. Struct. Biol. 128 1999 82 97
-
(1999)
J. Struct. Biol.
, vol.128
, pp. 82-97
-
-
Ludtke, S.J.1
Baldwin, P.R.2
Chiu, W.3
-
32
-
-
3142538754
-
Seeing GroEL at 6 Å resolution by single particle electron cryomicroscopy
-
S.J. Ludtke, D.H. Chen, J.L. Song, D.T. Chuang, and W. Chiu Seeing GroEL at 6 Å resolution by single particle electron cryomicroscopy Structure (Camb.) 12 2004 1129 1136
-
(2004)
Structure (Camb.)
, vol.12
, pp. 1129-1136
-
-
Ludtke, S.J.1
Chen, D.H.2
Song, J.L.3
Chuang, D.T.4
Chiu, W.5
-
33
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
J. MacKerell, D. Bashford, M. Bellott, R.L. Dunbrack Jr., J.D. Evanseck, M.J. Field, S. Fischer, J. Gao, H. Guo, S. Ha, D. Joseph-McCarthy, L. Kuchnir, K. Kuczera, F.T.K. Lau, C. Mattos, S. Michnick, T. Ngo, D.T. Nguyen, B. Prodhom, I. Reiher, B. Roux, M. Schlenkrich, J.C. Smith, R. Stote, J. Straub, M. Watanabe, J. Wiorkiewicz-Kuczera, D. Yin, and M. Karplus All-atom empirical potential for molecular modeling and dynamics studies of proteins J. Phys. Chem. B 102 1998 3586 3616
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
MacKerell, J.1
Bashford, D.2
Bellott, M.3
Dunbrack Jr., R.L.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph-Mccarthy, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.T.K.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher, I.20
Roux, B.21
Schlenkrich, M.22
Smith, J.C.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiorkiewicz-Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
34
-
-
4143069368
-
Structure of the bifunctional and Golgi-associated formiminotransferase cyclodeaminase octamer
-
Y. Mao, N.K. Vyas, M.N. Vyas, D.H. Chen, S.J. Ludtke, W. Chiu, and F.A. Quiocho Structure of the bifunctional and Golgi-associated formiminotransferase cyclodeaminase octamer EMBO J. 23 2004 2963 2971
-
(2004)
EMBO J.
, vol.23
, pp. 2963-2971
-
-
Mao, Y.1
Vyas, N.K.2
Vyas, M.N.3
Chen, D.H.4
Ludtke, S.J.5
Chiu, W.6
Quiocho, F.A.7
-
36
-
-
0033873929
-
Comparative protein structure modeling of genes and genomes
-
M.A. Marti-Renom, A.C. Stuart, A. Fiser, R. Sanchez, F. Melo, and A. Sali Comparative protein structure modeling of genes and genomes Annu. Rev. Biophys. Biomol. Struct. 29 2000 291 325
-
(2000)
Annu. Rev. Biophys. Biomol. Struct.
, vol.29
, pp. 291-325
-
-
Marti-Renom, M.A.1
Stuart, A.C.2
Fiser, A.3
Sanchez, R.4
Melo, F.5
Sali, A.6
-
37
-
-
0036145846
-
Statistical potentials for fold assessment
-
F. Melo, R. Sanchez, and A. Sali Statistical potentials for fold assessment Protein Sci. 11 2002 430 448
-
(2002)
Protein Sci.
, vol.11
, pp. 430-448
-
-
Melo, F.1
Sanchez, R.2
Sali, A.3
-
39
-
-
0037173062
-
How to describe protein motion without amino acid sequence and atomic coordinates
-
D. Ming, Y. Kong, M.A. Lambert, Z. Huang, and J. Ma How to describe protein motion without amino acid sequence and atomic coordinates Proc. Natl. Acad. Sci. USA 99 2002 8620 8625
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 8620-8625
-
-
Ming, D.1
Kong, Y.2
Lambert, M.A.3
Huang, Z.4
Ma, J.5
-
40
-
-
0242267517
-
Critical assessment of methods of protein structure prediction (CASP)-round V
-
J. Moult, K. Fidelis, A. Zemla, and T. Hubbard Critical assessment of methods of protein structure prediction (CASP)-round V Proteins 53 Suppl. 6 2003 334 339
-
(2003)
Proteins
, vol.53
, Issue.6 SUPPL.
, pp. 334-339
-
-
Moult, J.1
Fidelis, K.2
Zemla, A.3
Hubbard, T.4
-
41
-
-
4444221565
-
UCSF chimera-a visualization system for exploratory research and analysis
-
E.F. Pettersen, T.D. Goddard, C.C. Huang, G.S. Couch, D.M. Greenblatt, E.C. Meng, and T.E. Ferrin UCSF chimera-a visualization system for exploratory research and analysis J. Comput. Chem. 25 2004 1605 1612
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
42
-
-
9144244232
-
MODBASE, a database of annotated comparative protein structure models, and associated resources
-
U. Pieper, N. Eswar, H. Braberg, M.S. Madhusudhan, F.P. Davis, A.C. Stuart, N. Mirkovic, A. Rossi, M.A. Marti-Renom, A. Fiser, B. Webb, D. Greenblatt, C.C. Huang, T.E. Ferrin, and A. Sali MODBASE, a database of annotated comparative protein structure models, and associated resources Nucleic Acids Res. 32 Database issue 2004 D217 D222
-
(2004)
Nucleic Acids Res.
, vol.32
, Issue.DATABASE ISSUE
-
-
Pieper, U.1
Eswar, N.2
Braberg, H.3
Madhusudhan, M.S.4
Davis, F.P.5
Stuart, A.C.6
Mirkovic, N.7
Rossi, A.8
Marti-Renom, M.A.9
Fiser, A.10
Webb, B.11
Greenblatt, D.12
Huang, C.C.13
Ferrin, T.E.14
Sali, A.15
-
43
-
-
0032803449
-
Visualizing 3D data obtained from microscopy on the Internet
-
J.J. Pittet, C. Henn, A. Engel, and J.B. Heymann Visualizing 3D data obtained from microscopy on the Internet J. Struct. Biol. 125 1999 123 132
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 123-132
-
-
Pittet, J.J.1
Henn, C.2
Engel, A.3
Heymann, J.B.4
-
44
-
-
0027226230
-
Structure of the actin-myosin complex and its implications for muscle contraction
-
I. Rayment, H.M. Holden, M. Whittaker, C.B. Yohn, M. Lorenz, K.C. Holmes, and R.A. Milligan Structure of the actin-myosin complex and its implications for muscle contraction Science 261 1993 58 65
-
(1993)
Science
, vol.261
, pp. 58-65
-
-
Rayment, I.1
Holden, H.M.2
Whittaker, M.3
Yohn, C.B.4
Lorenz, M.5
Holmes, K.C.6
Milligan, R.A.7
-
45
-
-
0033776245
-
Docking structures of domains into maps from cryo-electron microscopy using local correlation
-
A.M. Roseman Docking structures of domains into maps from cryo-electron microscopy using local correlation Acta Crystallogr. D 56 2000 1332 1340
-
(2000)
Acta Crystallogr. D
, vol.56
, pp. 1332-1340
-
-
Roseman, A.M.1
-
46
-
-
0033780164
-
Fitting atomic models into electron-microscopy maps
-
M.G. Rossmann Fitting atomic models into electron-microscopy maps Acta Crystallogr. D Biol. Crystallogr. 56 2000 1341 1349
-
(2000)
Acta Crystallogr. D Biol. Crystallogr.
, vol.56
, pp. 1341-1349
-
-
Rossmann, M.G.1
-
47
-
-
2942582560
-
A structural perspective on protein-protein interactions
-
R.B. Russell, F. Alber, P. Aloy, F.P. Davis, D. Korkin, M. Pichaud, M. Topf, and A. Sali A structural perspective on protein-protein interactions Curr. Opin. Struct. Biol. 14 2004 313 324
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 313-324
-
-
Russell, R.B.1
Alber, F.2
Aloy, P.3
Davis, F.P.4
Korkin, D.5
Pichaud, M.6
Topf, M.7
Sali, A.8
-
48
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
A. Sali, and T.L. Blundell Comparative protein modelling by satisfaction of spatial restraints J. Mol. Biol. 234 1993 779 815
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
49
-
-
0033400935
-
Challenges at the frontiers of structural biology
-
A. Sali, and J. Kuriyan Challenges at the frontiers of structural biology Trends Cell Biol. 9 1999 M20 M24
-
(1999)
Trends Cell Biol.
, vol.9
-
-
Sali, A.1
Kuriyan, J.2
-
50
-
-
0037435031
-
From words to literature in structural proteomics
-
A. Sali, R. Glaeser, T. Earnest, and W. Baumeister From words to literature in structural proteomics Nature 422 2003 216 225
-
(2003)
Nature
, vol.422
, pp. 216-225
-
-
Sali, A.1
Glaeser, R.2
Earnest, T.3
Baumeister, W.4
-
51
-
-
0042738069
-
Full-length archaeal Rad51 structure and mutants: Mechanisms for RAD51 assembly and control by BRCA2
-
D.S. Shin, L. Pellegrini, D.S. Daniels, B. Yelent, L. Craig, D. Bates, D.S. Yu, M.K. Shivji, C. Hitomi, A.S. Arvai, N. Volkmann, H. Tsuruta, T.L. Blundell, A.R. Venkitaraman, and J.A. Tainer Full-length archaeal Rad51 structure and mutants: mechanisms for RAD51 assembly and control by BRCA2 EMBO J. 22 2003 4566 4576
-
(2003)
EMBO J.
, vol.22
, pp. 4566-4576
-
-
Shin, D.S.1
Pellegrini, L.2
Daniels, D.S.3
Yelent, B.4
Craig, L.5
Bates, D.6
Yu, D.S.7
Shivji, M.K.8
Hitomi, C.9
Arvai, A.S.10
Volkmann, N.11
Tsuruta, H.12
Blundell, T.L.13
Venkitaraman, A.R.14
Tainer, J.A.15
-
52
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
I.N. Shindyalov, and P.E. Bourne Protein structure alignment by incremental combinatorial extension (CE) of the optimal path Protein Eng. 11 1998 739 747
-
(1998)
Protein Eng.
, vol.11
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
53
-
-
0027490731
-
Recognition of errors in three-dimensional structures of proteins
-
M.J. Sippl Recognition of errors in three-dimensional structures of proteins Proteins 17 1993 355 362
-
(1993)
Proteins
, vol.17
, pp. 355-362
-
-
Sippl, M.J.1
-
54
-
-
0343811700
-
A model for the microtubule-Ncd motor protein complex obtained by cryo-electron microscopy and image analysis
-
H. Sosa, D.P. Dias, A. Hoenger, M. Whittaker, E. Wilson-Kubalek, E. Sablin, R.J. Fletterick, R.D. Vale, and R.A. Milligan A model for the microtubule-Ncd motor protein complex obtained by cryo-electron microscopy and image analysis Cell 90 1997 217 224
-
(1997)
Cell
, vol.90
, pp. 217-224
-
-
Sosa, H.1
Dias, D.P.2
Hoenger, A.3
Whittaker, M.4
Wilson-Kubalek, E.5
Sablin, E.6
Fletterick, R.J.7
Vale, R.D.8
Milligan, R.A.9
-
55
-
-
0035798380
-
Structure of the 80S ribosome from Saccharomyces cerevisiae-tRNA-ribosome and subunit-subunit interactions
-
C.M. Spahn, R. Beckmann, N. Eswar, P.A. Penczek, A. Sali, G. Blobel, and J. Frank Structure of the 80S ribosome from Saccharomyces cerevisiae-tRNA- ribosome and subunit-subunit interactions Cell 107 2001 373 386
-
(2001)
Cell
, vol.107
, pp. 373-386
-
-
Spahn, C.M.1
Beckmann, R.2
Eswar, N.3
Penczek, P.A.4
Sali, A.5
Blobel, G.6
Frank, J.7
-
56
-
-
0027184774
-
Difference imaging of adenovirus: Bridging the resolution gap between X-ray crystallography and electron microscopy
-
P.L. Stewart, S.D. Fuller, and R.M. Burnett Difference imaging of adenovirus: bridging the resolution gap between X-ray crystallography and electron microscopy EMBO J. 12 1993 2589 2599
-
(1993)
EMBO J.
, vol.12
, pp. 2589-2599
-
-
Stewart, P.L.1
Fuller, S.D.2
Burnett, R.M.3
-
57
-
-
0036382958
-
Exploring global distortions of biological macromolecules and assemblies from low-resolution structural information and elastic network theory
-
F. Tama, W. Wriggers, and C.L. Brooks 3rd Exploring global distortions of biological macromolecules and assemblies from low-resolution structural information and elastic network theory J. Mol. Biol. 321 2002 297 305
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 297-305
-
-
Tama, F.1
Wriggers, W.2
Brooks III, C.L.3
-
58
-
-
0028245914
-
Three-dimensional structure of membrane-bound annexin V. A correlative electron microscopy-X-ray crystallography study
-
D. Voges, R. Berendes, A. Burger, P. Demange, W. Baumeister, and R. Huber Three-dimensional structure of membrane-bound annexin V. A correlative electron microscopy-X-ray crystallography study J. Mol. Biol. 238 1994 199 213
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 199-213
-
-
Voges, D.1
Berendes, R.2
Burger, A.3
Demange, P.4
Baumeister, W.5
Huber, R.6
-
59
-
-
0032779888
-
Quantitative fitting of atomic models into observed densities derived by electron microscopy
-
N. Volkmann, and D. Hanein Quantitative fitting of atomic models into observed densities derived by electron microscopy J. Struct. Biol. 125 1999 176 184
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 176-184
-
-
Volkmann, N.1
Hanein, D.2
-
60
-
-
0037406141
-
Can correct protein models be identified?
-
B. Wallner, and A. Elofsson Can correct protein models be identified? Protein Sci. 12 2003 1073 1086
-
(2003)
Protein Sci.
, vol.12
, pp. 1073-1086
-
-
Wallner, B.1
Elofsson, A.2
-
61
-
-
4344685227
-
Global Ribosome motions revealed with elastic network model
-
Y. Wang, A.J. Rader, I. Bahar, and R.L. Jernigan Global Ribosome motions revealed with elastic network model J. Struct. Biol. 147 2004 302 314
-
(2004)
J. Struct. Biol.
, vol.147
, pp. 302-314
-
-
Wang, Y.1
Rader, A.J.2
Bahar, I.3
Jernigan, R.L.4
-
62
-
-
0028773903
-
The structure of a neutralized virus: Canine parvovirus complexed with neutralizing antibody fragment
-
W.R. Wikoff, G. Wang, C.R. Parrish, R.H. Cheng, M.L. Strassheim, T.S. Baker, and M.G. Rossmann The structure of a neutralized virus: canine parvovirus complexed with neutralizing antibody fragment Structure 2 1994 595 607
-
(1994)
Structure
, vol.2
, pp. 595-607
-
-
Wikoff, W.R.1
Wang, G.2
Parrish, C.R.3
Cheng, R.H.4
Strassheim, M.L.5
Baker, T.S.6
Rossmann, M.G.7
-
63
-
-
0034802465
-
Modeling tricks and fitting techniques for multiresolution structures
-
W. Wriggers, and P. Chacon Modeling tricks and fitting techniques for multiresolution structures Structure (Camb.) 9 2001 779 788
-
(2001)
Structure (Camb.)
, vol.9
, pp. 779-788
-
-
Wriggers, W.1
Chacon, P.2
-
64
-
-
0032780181
-
Situs: A package for docking crystal structures into low-resolution maps from electron microscopy
-
W. Wriggers, R.A. Milligan, and J.A. McCammon Situs: A package for docking crystal structures into low-resolution maps from electron microscopy J. Struct. Biol. 125 1999 185 195
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 185-195
-
-
Wriggers, W.1
Milligan, R.A.2
McCammon, J.A.3
-
65
-
-
0037285752
-
A core-weighted fitting method for docking atomic structures into low-resolution maps: Application to cryo-electron microscopy
-
X. Wu, J.L. Milne, M.J. Borgnia, A.V. Rostapshov, S. Subramaniam, and B.R. Brooks A core-weighted fitting method for docking atomic structures into low-resolution maps: application to cryo-electron microscopy J. Struct. Biol. 141 2003 63 76
-
(2003)
J. Struct. Biol.
, vol.141
, pp. 63-76
-
-
Wu, X.1
Milne, J.L.2
Borgnia, M.J.3
Rostapshov, A.V.4
Subramaniam, S.5
Brooks, B.R.6
-
66
-
-
0042827239
-
Determination of icosahedral virus structures by electron cryomicroscopy at subnanometer resolution
-
Z.H. Zhou, and W. Chiu Determination of icosahedral virus structures by electron cryomicroscopy at subnanometer resolution Adv. Protein Chem. 64 2003 93 124
-
(2003)
Adv. Protein Chem.
, vol.64
, pp. 93-124
-
-
Zhou, Z.H.1
Chiu, W.2
-
67
-
-
0034814786
-
Electron cryomicroscopy and bioinformatics suggest protein fold models for rice dwarf virus
-
Z.H. Zhou, M.L. Baker, W. Jiang, M. Dougherty, J. Jakana, G. Dong, G. Lu, and W. Chiu Electron cryomicroscopy and bioinformatics suggest protein fold models for rice dwarf virus Nat. Struct. Biol. 8 2001 868 873
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 868-873
-
-
Zhou, Z.H.1
Baker, M.L.2
Jiang, W.3
Dougherty, M.4
Jakana, J.5
Dong, G.6
Lu, G.7
Chiu, W.8
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