Bridging the information gap: Computational tools for intermediate resolution structure interpretation

Journal of Molecular Biology

Volumn 308, Issue 5, 2001, Pages 1033-1044

  Jiang, Wen ^a   Baker, Matthew L ^a   Ludtke, Steven J ^a   Chiu, Wah ^a  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

Author keywords

Bioinformatics; Electron cryomicroscopy; Fold recognition; Macromolecular assemblies; Structure

Indexed keywords

PROTEIN;

ALGORITHM; ARTICLE; COMPLEX FORMATION; CORRELATION FUNCTION; MACROMOLECULE; MICROSCOPY; MODEL; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FOLDING; RELIABILITY; STRUCTURE ANALYSIS; X RAY CRYSTALLOGRAPHY;

EID: 0035906702     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2001.4633     Document Type: Article

References (34)

1. Protein Data Bank (PDB): Database of three-dimensional structural information of biological macromolecules
2. Mapping the protein universe
3. An overview of structural genomics
4. Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy
5. Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy
6. A 9 Å resolution X-ray crystallographic map of the large ribosomal subunit
7. The Escherichia coli large ribosomal subunit at 7.5 Å resolution
8. Three-dimensional structure of a recombinant gap junction membrane channel
9. Cryo-electron microscopy reveals the functional organization of an enveloped virus, Semliki Forest virus
10. Seeing the herpesvirus capsid at 8.5 Å
11. SCOP: A structural classification of proteins database
12. Structure of bacteriorhodopsin at 1.55 Å resolution
13. Atomic coordinates for triose phosphate isomerase from chicken muscle
14. Crystal structure of the tyrosine kinase domain of the human insulin receptor
15. The crystal structure of bluetongue virus VP7
16. The atomic structure of the bluetongue virus core
17. Solution structure of the E. coli 70 S ribosome at 11.5 Å resolution
18. Detecting folding motifs and similarities in protein structures
19. Comparison of spatial arrangements of secondary structural elements in proteins
20. Diversity of functions of proteins with internal symmetry in spatial arrangement of secondary structural elements
21. Protein fold recognition using sequence-derived predictions
22. Crystal structure of the top domain of African horse sickness virus VP7: Comparisons with bluetongue virus VP7
23. The structure of mouse tumour-necrosis factor at 1.4 Å resolution: Towards modulation of its selectivity and trimerization
24. Structure of double-shelled rice dwarf virus
25. Macromolecular assemblages. Sizing things up
26. The herpes simplex virus triplex protein, VP23, exists as a molten globule
27. Situs: A package for docking crystal structures into low-resolution maps from electron microscopy
28. Identification of an N-terminal redox sensor in RYR1
29. Correlation functions revisited
30. Algorithms for finding the axis of a helix: Fast rotational and parametric least-squares methods
31. EMAN: Semi-automated software for high resolution single particle reconstructions
32. Ribbons