-
1
-
-
0031019924
-
The folding pathway of a protein at high resolution from microseconds to seconds
-
Nölting B, Golbik R, Neira JL, Soler-González AS, Schreiber G, Fersht AR. The folding pathway of a protein at high resolution from microseconds to seconds. Proc Natl Acad Sci USA 1997;94:826-830.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 826-830
-
-
Nölting, B.1
Golbik, R.2
Neira, J.L.3
Soler-González, A.S.4
Schreiber, G.5
Fersht, A.R.6
-
2
-
-
0033531458
-
Analysis of the folding pathway of chymotrypsin inhibitor by correlation of Φ-values with inter-residue contacts
-
Nölting B. Analysis of the folding pathway of chymotrypsin inhibitor by correlation of Φ-values with inter-residue contacts. J Theor Biol 1999;197:113-121.
-
(1999)
J Theor Biol
, vol.197
, pp. 113-121
-
-
Nölting, B.1
-
4
-
-
0034669844
-
Mechanism of protein folding
-
Nölting B, Andert K. Mechanism of protein folding. Proteins 2000;41:288-298.
-
(2000)
Proteins
, vol.41
, pp. 288-298
-
-
Nölting, B.1
Andert, K.2
-
5
-
-
0028024928
-
Specific nucleus as the transition state for protein folding: Evidence from the lattice model
-
Abkevich VI, Gutin AM, Shakhnovich EI. Specific nucleus as the transition state for protein folding: evidence from the lattice model. Biochemistry 1994;33:10026-10036.
-
(1994)
Biochemistry
, vol.33
, pp. 10026-10036
-
-
Abkevich, V.I.1
Gutin, A.M.2
Shakhnovich, E.I.3
-
6
-
-
0028856785
-
Optimisation of rates of protein folding - the nucleation-condensation mechanism and its implications
-
Fersht AR. Optimisation of rates of protein folding - the nucleation-condensation mechanism and its implications. Proc Natl Acad Sci USA 1995;92:10869-10873.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 10869-10873
-
-
Fersht, A.R.1
-
7
-
-
0031043161
-
Nucleation mechanisms in protein folding
-
Fersht AR. Nucleation mechanisms in protein folding. Curr Opin Struct Biol 1997;7:3-9.
-
(1997)
Curr Opin Struct Biol
, vol.7
, pp. 3-9
-
-
Fersht, A.R.1
-
9
-
-
2542599277
-
Φ-value analysis and the nature of protein-folding transition states
-
Fersht AR, Sato S. Φ-value analysis and the nature of protein-folding transition states. Proc Natl Acad Sci USA 2004;101:7976-7981.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 7976-7981
-
-
Fersht, A.R.1
Sato, S.2
-
10
-
-
20444409471
-
The structure of the major transition state for folding of an FF domain from experiment and simulation
-
Jemth P, Day R, Gianni S, Khan F, Allen M, Daggett V, Fersht AR. The structure of the major transition state for folding of an FF domain from experiment and simulation. J Mol Biol 2005;350:363-378.
-
(2005)
J Mol Biol
, vol.350
, pp. 363-378
-
-
Jemth, P.1
Day, R.2
Gianni, S.3
Khan, F.4
Allen, M.5
Daggett, V.6
Fersht, A.R.7
-
11
-
-
24144492709
-
Theoretical study of protein folding: Outlining folding nuclei and estimation of protein folding rates
-
Galzitskaya OV, Garbuzynskiy SO, Finkelstein AV. Theoretical study of protein folding: outlining folding nuclei and estimation of protein folding rates. J Phys Condens Matter 2005;17:S1539-S1551.
-
(2005)
J Phys Condens Matter
, vol.17
-
-
Galzitskaya, O.V.1
Garbuzynskiy, S.O.2
Finkelstein, A.V.3
-
12
-
-
25144462746
-
Ultra-fast barrier-limited folding in the peripheral subunit-binding domain family
-
Ferguson N, Sharpe TD, Schartau PJ, Sato S, Allen MD, Johnson CM, Rutherford TJ, Fersht AR. Ultra-fast barrier-limited folding in the peripheral subunit-binding domain family. J Mol Biol 2005;353:427-446.
-
(2005)
J Mol Biol
, vol.353
, pp. 427-446
-
-
Ferguson, N.1
Sharpe, T.D.2
Schartau, P.J.3
Sato, S.4
Allen, M.D.5
Johnson, C.M.6
Rutherford, T.J.7
Fersht, A.R.8
-
13
-
-
34547151184
-
The helix-turn-helix motif as an ultrafast independently folding domain: The pathway of folding of Engrailed homeodomain
-
Religa TL, Johnson CM, Vu DM, Brewer SH, Dyer RB, Fersht AR. The helix-turn-helix motif as an ultrafast independently folding domain: the pathway of folding of Engrailed homeodomain. Proc Natl Acad Sci USA 2007;104:9272-9277.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 9272-9277
-
-
Religa, T.L.1
Johnson, C.M.2
Vu, D.M.3
Brewer, S.H.4
Dyer, R.B.5
Fersht, A.R.6
-
14
-
-
33846917230
-
Ultrafast and downhill protein folding
-
Dyer RB. Ultrafast and downhill protein folding. Curr Opin Struct Biol 2007;17:38-47.
-
(2007)
Curr Opin Struct Biol
, vol.17
, pp. 38-47
-
-
Dyer, R.B.1
-
15
-
-
0002006297
-
Are there pathways for protein folding?
-
Levinthal C. Are there pathways for protein folding? J Chim Phys Phys-Chim Biol 1968;65:44-45.
-
(1968)
J Chim Phys Phys-Chim Biol
, vol.65
, pp. 44-45
-
-
Levinthal, C.1
-
16
-
-
0030623529
-
-
Finkelstein AV, Badretdinov AY. Rate of protein folding near the point of thermodynamic equilibrium between the coil and the most stable chain fold. Fold Des 1997;2:115-121. Erratum in: Fold Des 1998;3:67.
-
Finkelstein AV, Badretdinov AY. Rate of protein folding near the point of thermodynamic equilibrium between the coil and the most stable chain fold. Fold Des 1997;2:115-121. Erratum in: Fold Des 1998;3:67.
-
-
-
-
17
-
-
0034799915
-
Cunning simplicity of protein folding landscapes
-
Bogatyreva NS, Finkelstein AV. Cunning simplicity of protein folding landscapes. Protein Eng 2001;14:521-523.
-
(2001)
Protein Eng
, vol.14
, pp. 521-523
-
-
Bogatyreva, N.S.1
Finkelstein, A.V.2
-
18
-
-
0036913041
-
Cunning simplicity of a hierarchical folding
-
Finkelstein AV. Cunning simplicity of a hierarchical folding. J Biomol Struct Dyn 2002;20:311-313.
-
(2002)
J Biomol Struct Dyn
, vol.20
, pp. 311-313
-
-
Finkelstein, A.V.1
-
19
-
-
0016671420
-
A model of myoglobin self-organization
-
Ptitsyn OB, Rashin AA. A model of myoglobin self-organization. Biophys Chem 1975;3:1-20.
-
(1975)
Biophys Chem
, vol.3
, pp. 1-20
-
-
Ptitsyn, O.B.1
Rashin, A.A.2
-
20
-
-
0020024242
-
Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding
-
Kim PS, Baldwin RL. Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding. Annu Rev Biochem 1982;51:459-489.
-
(1982)
Annu Rev Biochem
, vol.51
, pp. 459-489
-
-
Kim, P.S.1
Baldwin, R.L.2
-
21
-
-
0025345415
-
Intermediates in the folding reactions of small proteins
-
Kim PS, Baldwin RL. Intermediates in the folding reactions of small proteins. Annu Rev Biochem 1990;59:631-660.
-
(1990)
Annu Rev Biochem
, vol.59
, pp. 631-660
-
-
Kim, P.S.1
Baldwin, R.L.2
-
22
-
-
0023758305
-
NMR evidence for an early framework intermediate on the folding pathway of ribonuclease A
-
Udgaonkar JB, Baldwin RL. NMR evidence for an early framework intermediate on the folding pathway of ribonuclease A. Nature 1988;335:694-699.
-
(1988)
Nature
, vol.335
, pp. 694-699
-
-
Udgaonkar, J.B.1
Baldwin, R.L.2
-
24
-
-
33748266869
-
-
Hausrath AC. A kinetic theory of tertiary contact formation coupled to the helix-coil transition in polypeptides. J Chem Phys 2006;125:084909-1-17.
-
Hausrath AC. A kinetic theory of tertiary contact formation coupled to the helix-coil transition in polypeptides. J Chem Phys 2006;125:084909-1-17.
-
-
-
-
25
-
-
33947704135
-
Pathway of oxidative folding of bovine α-interferon: Predominance of native disulfide-bonded folding intermediates
-
Lin CC, Chang JY. Pathway of oxidative folding of bovine α-interferon: predominance of native disulfide-bonded folding intermediates. Biochemistry 2007;46:3925-3932.
-
(2007)
Biochemistry
, vol.46
, pp. 3925-3932
-
-
Lin, C.C.1
Chang, J.Y.2
-
26
-
-
0017636999
-
Hydrophobicity, hydrophilicity, and the radial and orientational distributions of residues in native proteins
-
Rackovsky S, Scheraga HA. Hydrophobicity, hydrophilicity, and the radial and orientational distributions of residues in native proteins. Proc Natl Acad Sci USA 1977;74:5248-5251.
-
(1977)
Proc Natl Acad Sci USA
, vol.74
, pp. 5248-5251
-
-
Rackovsky, S.1
Scheraga, H.A.2
-
27
-
-
0022423920
-
Theory for the folding and stability of globular proteins
-
Dill KA. Theory for the folding and stability of globular proteins. Biochemistry 1985;24;1501-1509.
-
(1985)
Biochemistry
, vol.24
, pp. 1501-1509
-
-
Dill, K.A.1
-
28
-
-
0025370815
-
Dominant forces in protein folding
-
Dill KA. Dominant forces in protein folding. Biochemistry 1990;29:7133-7155.
-
(1990)
Biochemistry
, vol.29
, pp. 7133-7155
-
-
Dill, K.A.1
-
29
-
-
0025706147
-
The meaning of hydrophobicity
-
Dill KA. The meaning of hydrophobicity. Science 1990;250:297-298.
-
(1990)
Science
, vol.250
, pp. 297-298
-
-
Dill, K.A.1
-
30
-
-
0028929556
-
Principles of protein folding - a perspective from simple exact models
-
Dill KA, Bromberg S, Yue KZ, Fiebig KM, Yee DP, Thomas PD, Chan HS. Principles of protein folding - a perspective from simple exact models. Protein Sci 1995;4:561-602.
-
(1995)
Protein Sci
, vol.4
, pp. 561-602
-
-
Dill, K.A.1
Bromberg, S.2
Yue, K.Z.3
Fiebig, K.M.4
Yee, D.P.5
Thomas, P.D.6
Chan, H.S.7
-
32
-
-
33947315248
-
Microsecond hydrophobic collapse in the folding of Escherichia coli dihydrofolate reductase, an α/β-type protein
-
Arai M, Kondrashkina E, Kayatekin C, Matthews CR, Iwakura M, Bilsel O. Microsecond hydrophobic collapse in the folding of Escherichia coli dihydrofolate reductase, an α/β-type protein. J Mol Biol 2007;368:219-229.
-
(2007)
J Mol Biol
, vol.368
, pp. 219-229
-
-
Arai, M.1
Kondrashkina, E.2
Kayatekin, C.3
Matthews, C.R.4
Iwakura, M.5
Bilsel, O.6
-
34
-
-
0030789351
-
Laser temperature-jump study of the helix-coil kinetics of an alanine peptide interpreted with a 'kinetic zipper' model
-
Thompson PA, Eaton WA, Hofrichter J. Laser temperature-jump study of the helix-coil kinetics of an alanine peptide interpreted with a 'kinetic zipper' model. Biochemistry 1997;36:9200-9210.
-
(1997)
Biochemistry
, vol.36
, pp. 9200-9210
-
-
Thompson, P.A.1
Eaton, W.A.2
Hofrichter, J.3
-
36
-
-
0030155292
-
Fast folding experiments and the topography of protein folding energy landscapes
-
Wolynes PG, Luthey-Schulten Z, Onuchic JN. Fast folding experiments and the topography of protein folding energy landscapes. Chem Biol 1996;3:425-432.
-
(1996)
Chem Biol
, vol.3
, pp. 425-432
-
-
Wolynes, P.G.1
Luthey-Schulten, Z.2
Onuchic, J.N.3
-
39
-
-
0033515615
-
Exploring structures in protein folding funnels with free energy functionals: The transition state ensemble
-
Shoemaker BA, Wang J, Wolynes PG. Exploring structures in protein folding funnels with free energy functionals: the transition state ensemble. J Mol Biol 1999;287:675-694.
-
(1999)
J Mol Biol
, vol.287
, pp. 675-694
-
-
Shoemaker, B.A.1
Wang, J.2
Wolynes, P.G.3
-
40
-
-
0032568599
-
Folding funnels and frustration in off-lattice minimalist protein landscapes
-
Nymeyer H, Garcia AE, Onuchic JN. Folding funnels and frustration in off-lattice minimalist protein landscapes. Proc Natl Acad Sci USA 1998;95:5921-5928.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 5921-5928
-
-
Nymeyer, H.1
Garcia, A.E.2
Onuchic, J.N.3
-
41
-
-
0345699523
-
Landscapes, funnels, glasses, and folding: From metaphor to software
-
Wolynes PG. Landscapes, funnels, glasses, and folding: from metaphor to software. Proc Am Phil Soc 2001;145:555-563.
-
(2001)
Proc Am Phil Soc
, vol.145
, pp. 555-563
-
-
Wolynes, P.G.1
-
42
-
-
33748774141
-
The folding energy landscape of the dimerization domain of Escherichia coli Trp repressor: A joint experimental and theoretical investigation
-
Simler BR, Levy Y, Onuchic JN, Matthews CR. The folding energy landscape of the dimerization domain of Escherichia coli Trp repressor: a joint experimental and theoretical investigation. J Mol Biol 2006;363:262-278.
-
(2006)
J Mol Biol
, vol.363
, pp. 262-278
-
-
Simler, B.R.1
Levy, Y.2
Onuchic, J.N.3
Matthews, C.R.4
-
43
-
-
33845213187
-
Secondary structure provides a template for the folding of nearby polypeptides
-
Kameda T, Takada S. Secondary structure provides a template for the folding of nearby polypeptides. Proc Natl Acad Sci USA 2006;103:17765-17770.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 17765-17770
-
-
Kameda, T.1
Takada, S.2
-
44
-
-
34548076110
-
-
Chapagain PP, Parra JL, Gerstman BS, Liu Y. Sampling of states for estimating the folding funnel entropy and energy landscape of a model α-helical hairpin peptide. J Chem Phys 2007;127:075103-1-7.
-
Chapagain PP, Parra JL, Gerstman BS, Liu Y. Sampling of states for estimating the folding funnel entropy and energy landscape of a model α-helical hairpin peptide. J Chem Phys 2007;127:075103-1-7.
-
-
-
-
45
-
-
34249818803
-
Folding of the 25 residue Aβ(12-36) peptide in TFE/water: Temperature-dependent transition from a funneled free-energy landscape to a rugged one
-
Kamiya N, Mitomo D, Shea JE, Higo J. Folding of the 25 residue Aβ(12-36) peptide in TFE/water: temperature-dependent transition from a funneled free-energy landscape to a rugged one. J Phys Chem B 2007;111:5351-5356.
-
(2007)
J Phys Chem B
, vol.111
, pp. 5351-5356
-
-
Kamiya, N.1
Mitomo, D.2
Shea, J.E.3
Higo, J.4
-
46
-
-
34547154222
-
-
Kim J, Straub JE, Keyes T. Structure optimization and folding mechanisms of off-lattice protein models using statistical temperature molecular dynamics simulation: statistical temperature annealing. Phys Rev E Stat Nonlin Soft Matter Phys 2007;76:011913-1-8.
-
Kim J, Straub JE, Keyes T. Structure optimization and folding mechanisms of off-lattice protein models using statistical temperature molecular dynamics simulation: statistical temperature annealing. Phys Rev E Stat Nonlin Soft Matter Phys 2007;76:011913-1-8.
-
-
-
-
47
-
-
33846916730
-
Malleability of protein folding pathways: A simple reason for complex behaviour
-
Lindberg MO, Oliveberg M. Malleability of protein folding pathways: a simple reason for complex behaviour. Curr Opin Struct Biol 2007;17:21-29.
-
(2007)
Curr Opin Struct Biol
, vol.17
, pp. 21-29
-
-
Lindberg, M.O.1
Oliveberg, M.2
-
48
-
-
34547516861
-
Hydrophobic association of α-helices, steric dewetting, and enthalpic barriers to protein folding
-
MacCallum JL, Moghaddam MS, Chan HS, Tieleman DP. Hydrophobic association of α-helices, steric dewetting, and enthalpic barriers to protein folding. Proc Natl Acad Sci USA 2007;104:6206-6210.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 6206-6210
-
-
MacCallum, J.L.1
Moghaddam, M.S.2
Chan, H.S.3
Tieleman, D.P.4
-
49
-
-
0032812796
-
Mapping the interactions present in the transition state for unfolding/folding of FKBP12
-
Fulton KF, Main ERG, Daggett V, Jackson SE. Mapping the interactions present in the transition state for unfolding/folding of FKBP12. J Mol Biol 1999;291:445-461.
-
(1999)
J Mol Biol
, vol.291
, pp. 445-461
-
-
Fulton, K.F.1
Main, E.R.G.2
Daggett, V.3
Jackson, S.E.4
-
50
-
-
33846606027
-
Mutational analysis of the folding transition state of the C-terminal domain of ribosomal protein L9: A protein with an unusual β-sheet topology
-
Li Y, Gupta R, Cho JH, Raleigh DP. Mutational analysis of the folding transition state of the C-terminal domain of ribosomal protein L9: a protein with an unusual β-sheet topology. Biochemistry 2007;46:1013-1021.
-
(2007)
Biochemistry
, vol.46
, pp. 1013-1021
-
-
Li, Y.1
Gupta, R.2
Cho, J.H.3
Raleigh, D.P.4
-
51
-
-
20844443079
-
Ubiquitin folds through a highly polarized transition state
-
Went HM, Jackson SE. Ubiquitin folds through a highly polarized transition state. Protein Eng, Des Sel 2005;18:229-237.
-
(2005)
Protein Eng, Des Sel
, vol.18
, pp. 229-237
-
-
Went, H.M.1
Jackson, S.E.2
-
52
-
-
0031050429
-
Structural characterization of the molten globule of α-lactalbumin by solution X-ray scattering
-
Kataoka M, Kuwajima K, Tokunaga F, Goto Y. Structural characterization of the molten globule of α-lactalbumin by solution X-ray scattering. Protein Sci 1997;6:422-430.
-
(1997)
Protein Sci
, vol.6
, pp. 422-430
-
-
Kataoka, M.1
Kuwajima, K.2
Tokunaga, F.3
Goto, Y.4
-
53
-
-
0033621117
-
Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle X-ray scattering
-
Pollack L, Tate MW, Darnton NC, Knight JB, Gruner SM, Eaton WA, Austin RH. Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle X-ray scattering Proc Natl Acad Sci USA 1999;96:10115-10117.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 10115-10117
-
-
Pollack, L.1
Tate, M.W.2
Darnton, N.C.3
Knight, J.B.4
Gruner, S.M.5
Eaton, W.A.6
Austin, R.H.7
-
54
-
-
0026511656
-
The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding
-
Fersht AR, Matouschek A, Serrano L. The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding. J Mol Biol 1992;224:771-782.
-
(1992)
J Mol Biol
, vol.224
, pp. 771-782
-
-
Fersht, A.R.1
Matouschek, A.2
Serrano, L.3
-
55
-
-
0026553768
-
The folding of an enzyme. II. Substructure of barnase and the contribution of different interactions to protein stability
-
Serrano L, Kellis JT, Jr., Cann P, Matouschek A, Fersht AR. The folding of an enzyme. II. Substructure of barnase and the contribution of different interactions to protein stability. J Mol Biol 1992;224:783-804.
-
(1992)
J Mol Biol
, vol.224
, pp. 783-804
-
-
Serrano, L.1
Kellis Jr., J.T.2
Cann, P.3
Matouschek, A.4
Fersht, A.R.5
-
56
-
-
0026579572
-
The folding of an enzyme. III. Structure of the transition statefor unfolding of barnase analyzed by a protein engineering procedure
-
Serrano L, Matouschek A, Fersht AR. The folding of an enzyme. III. Structure of the transition statefor unfolding of barnase analyzed by a protein engineering procedure. J Mol Biol 1992;224:805-818.
-
(1992)
J Mol Biol
, vol.224
, pp. 805-818
-
-
Serrano, L.1
Matouschek, A.2
Fersht, A.R.3
-
57
-
-
0026550397
-
The folding of an enzyme. IV. Structure of an intermediate in the refolding of barnase analysed by a protein engineering procedure
-
Matouschek A, Serrano L, Fersht AR. The folding of an enzyme. IV. Structure of an intermediate in the refolding of barnase analysed by a protein engineering procedure. J Mol Biol 1992;224:819-835.
-
(1992)
J Mol Biol
, vol.224
, pp. 819-835
-
-
Matouschek, A.1
Serrano, L.2
Fersht, A.R.3
-
58
-
-
0028868995
-
The structure of the transition state for folding of chymotrypsin inhibitor 2 analyzed by protein engineering methods: Evidence for a nucleation-condensation mechanism for protein folding
-
Itzhaki LS, Otzen DE, Fersht AR. The structure of the transition state for folding of chymotrypsin inhibitor 2 analyzed by protein engineering methods: evidence for a nucleation-condensation mechanism for protein folding. J Mol Biol 1995;254:260-288.
-
(1995)
J Mol Biol
, vol.254
, pp. 260-288
-
-
Itzhaki, L.S.1
Otzen, D.E.2
Fersht, A.R.3
-
61
-
-
0028037217
-
Single versus parallel pathways of protein folding and fractional formation of structure in the transition state
-
Fersht AR, Itzhaki LS, elMasry NF, Matthews JM, Otzen DE. Single versus parallel pathways of protein folding and fractional formation of structure in the transition state. Proc Natl Acad Sci USA 1994;91:10426-10429.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 10426-10429
-
-
Fersht, A.R.1
Itzhaki, L.S.2
elMasry, N.F.3
Matthews, J.M.4
Otzen, D.E.5
-
62
-
-
33646152749
-
The contribution of the residues from the main hydrophobic core of ribonuclease A to its pressure-folding transition state
-
Font J, Benito A, Lange R, Ribó M, Vilanova M. The contribution of the residues from the main hydrophobic core of ribonuclease A to its pressure-folding transition state. Protein Sci 2006;15:1000-1009.
-
(2006)
Protein Sci
, vol.15
, pp. 1000-1009
-
-
Font, J.1
Benito, A.2
Lange, R.3
Ribó, M.4
Vilanova, M.5
-
63
-
-
34547651105
-
Searching for multiple folding pathways of a nearly symmetrical protein: Temperature dependent phi-value analysis of the B domain of protein A
-
Sato S, Fersht AR. Searching for multiple folding pathways of a nearly symmetrical protein: temperature dependent phi-value analysis of the B domain of protein A. J Mol Biol 2007;372:254-267.
-
(2007)
J Mol Biol
, vol.372
, pp. 254-267
-
-
Sato, S.1
Fersht, A.R.2
-
64
-
-
1942457259
-
Conformational heterogeneity of an equilibrium folding intermediate quantified and mapped by scanning mutagenesis
-
Yan S, Gawlak G, Smith J, Silver L, Koide A, Koide S. Conformational heterogeneity of an equilibrium folding intermediate quantified and mapped by scanning mutagenesis. J Mol Biol 2004;338:811-825.
-
(2004)
J Mol Biol
, vol.338
, pp. 811-825
-
-
Yan, S.1
Gawlak, G.2
Smith, J.3
Silver, L.4
Koide, A.5
Koide, S.6
-
65
-
-
23944522022
-
Downhill protein folding: Evolution meets physics
-
Gruebele M. Downhill protein folding: evolution meets physics. C R Biol 2005;328:701-712.
-
(2005)
C R Biol
, vol.328
, pp. 701-712
-
-
Gruebele, M.1
-
66
-
-
24344464777
-
Engineering a beta-sheet protein toward the folding speed limit
-
Nguyen H, Jäger M, Kelly JW, Gruebele M. Engineering a beta-sheet protein toward the folding speed limit. J Phys Chem B 2005;109:15182-15186.
-
(2005)
J Phys Chem B
, vol.109
, pp. 15182-15186
-
-
Nguyen, H.1
Jäger, M.2
Kelly, J.W.3
Gruebele, M.4
-
68
-
-
33845403686
-
Nanosecond folding dynamics of a three-stranded beta-sheet
-
Xu Y, Purkayastha P, Gai F. Nanosecond folding dynamics of a three-stranded beta-sheet. J Am Chem Soc 2006;128:15836-15842.
-
(2006)
J Am Chem Soc
, vol.128
, pp. 15836-15842
-
-
Xu, Y.1
Purkayastha, P.2
Gai, F.3
-
69
-
-
32044468940
-
The transition state for folding of a peripheral subunit-binding domain contains robust and ionic-strength dependent characteristics
-
Ferguson N, Sharpe TD, Johnson CM, Fersht AR. The transition state for folding of a peripheral subunit-binding domain contains robust and ionic-strength dependent characteristics. J Mol Biol 2006;356:1237-1247.
-
(2006)
J Mol Biol
, vol.356
, pp. 1237-1247
-
-
Ferguson, N.1
Sharpe, T.D.2
Johnson, C.M.3
Fersht, A.R.4
-
70
-
-
34347218159
-
Conformational dynamics and ensembles in protein folding
-
Muñoz V. Conformational dynamics and ensembles in protein folding. Annu Rev Biophys Biomol Struct 2007;36:395-412.
-
(2007)
Annu Rev Biophys Biomol Struct
, vol.36
, pp. 395-412
-
-
Muñoz, V.1
-
71
-
-
33846073474
-
Distinguishing between cooperative and unimodal downhill protein folding
-
Huang F, Sato S, Sharpe TD, Ying L, Fersht AR. Distinguishing between cooperative and unimodal downhill protein folding. Proc Natl Acad Sci USA 2007;104:123-127.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 123-127
-
-
Huang, F.1
Sato, S.2
Sharpe, T.D.3
Ying, L.4
Fersht, A.R.5
-
72
-
-
34547466590
-
Excluded volume, local structural cooperativity, and the polymer physics of protein folding rates
-
Qi X, Portman JJ. Excluded volume, local structural cooperativity, and the polymer physics of protein folding rates. Proc Natl Acad Sci USA 2007;104:10841-10846.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 10841-10846
-
-
Qi, X.1
Portman, J.J.2
-
73
-
-
34250012657
-
-
Bruscolini P, Pelizzola A, Zamparo M. Downhill versus two-state protein folding in a statistical mechanical model. J Chem Phys 2007;126:215103-1-8.
-
Bruscolini P, Pelizzola A, Zamparo M. Downhill versus two-state protein folding in a statistical mechanical model. J Chem Phys 2007;126:215103-1-8.
-
-
-
-
74
-
-
34250161638
-
6-85 towards downhill folding at its melting temperature
-
6-85 towards downhill folding at its melting temperature. J Mol Biol 2007;370:574-584.
-
(2007)
J Mol Biol
, vol.370
, pp. 574-584
-
-
Liu, F.1
Gruebele, M.2
-
75
-
-
34249887411
-
Probe-dependent and nonexponential relaxation kinetics: Unreliable signatures of downhill protein folding
-
Hagen SJ. Probe-dependent and nonexponential relaxation kinetics: unreliable signatures of downhill protein folding. Proteins 2007;68:205-217.
-
(2007)
Proteins
, vol.68
, pp. 205-217
-
-
Hagen, S.J.1
-
76
-
-
44949236102
-
Estimating free-energy barrier heights for an ultrafast folding protein from calorimetric and kinetic data
-
in press
-
Godoy-Ruiz R, Henry ER, Kubelka J, Hofrichter J, Muñoz V, Sanchez-Ruiz JM, Eaton WA. Estimating free-energy barrier heights for an ultrafast folding protein from calorimetric and kinetic data. J Phys Chem B, in press.
-
J Phys Chem B
-
-
Godoy-Ruiz, R.1
Henry, E.R.2
Kubelka, J.3
Hofrichter, J.4
Muñoz, V.5
Sanchez-Ruiz, J.M.6
Eaton, W.A.7
-
77
-
-
40649105020
-
Cooperative folding kinetics of BBL protein and peripheral subunit-binding domain homologues
-
Yu W, Chung K, Cheon M, Heo M, Han KH, Ham S, Chang I. Cooperative folding kinetics of BBL protein and peripheral subunit-binding domain homologues. Proc Natl Acad Sci USA 2008;105:2397-2402.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 2397-2402
-
-
Yu, W.1
Chung, K.2
Cheon, M.3
Heo, M.4
Han, K.H.5
Ham, S.6
Chang, I.7
-
78
-
-
40649128566
-
An experimental survey of the transition between two-state and downhill protein folding scenarios
-
Liu F, Du D, Fuller AA, Davoren JE, Wipf P, Kelly JW, Gruebele M. An experimental survey of the transition between two-state and downhill protein folding scenarios. Proc Natl Acad Sci USA 2008;105:2369-2374.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 2369-2374
-
-
Liu, F.1
Du, D.2
Fuller, A.A.3
Davoren, J.E.4
Wipf, P.5
Kelly, J.W.6
Gruebele, M.7
-
79
-
-
7044222120
-
The folding of spectrin domains II: Φ-value analysis of R16
-
Scott KA, Randles LG, Clarke J. The folding of spectrin domains II: Φ-value analysis of R16. J Mol Biol 2004;344:207-221.
-
(2004)
J Mol Biol
, vol.344
, pp. 207-221
-
-
Scott, K.A.1
Randles, L.G.2
Clarke, J.3
-
80
-
-
33646866548
-
-
Zong C, Wilson CJ, Shen T, Wolynes Wittung-Stafshede P. Φ-Value analysis of apo-azurin folding: comparison between experiment and theory. Biochemistry 2006;45:6458-6466.
-
Zong C, Wilson CJ, Shen T, Wolynes PG. Wittung-Stafshede P. Φ-Value analysis of apo-azurin folding: comparison between experiment and theory. Biochemistry 2006;45:6458-6466.
-
-
-
-
81
-
-
2442683149
-
The folding transition state of the cold shock protein is strongly polarized
-
Garcia-Mira MM, Boehringer D, Schmid FX. The folding transition state of the cold shock protein is strongly polarized. J Mol Biol 2004;339:555-569.
-
(2004)
J Mol Biol
, vol.339
, pp. 555-569
-
-
Garcia-Mira, M.M.1
Boehringer, D.2
Schmid, F.X.3
-
82
-
-
0036183221
-
IM7 folding mechanism: Misfolding on a path to the native state
-
Capaldi AP, Kleanthous C, Radford SE. IM7 folding mechanism: misfolding on a path to the native state. Nat Struct Biol 2002;9:209-216.
-
(2002)
Nat Struct Biol
, vol.9
, pp. 209-216
-
-
Capaldi, A.P.1
Kleanthous, C.2
Radford, S.E.3
-
83
-
-
0037423705
-
Structural analysis of the rate-limiting transition states in the folding of Im7 and Im9: Similarities and differences in the folding of homologous proteins
-
Friel CT, Capaldi AP, Radford SE. Structural analysis of the rate-limiting transition states in the folding of Im7 and Im9: similarities and differences in the folding of homologous proteins. J Mol Biol 2003;326:293-305.
-
(2003)
J Mol Biol
, vol.326
, pp. 293-305
-
-
Friel, C.T.1
Capaldi, A.P.2
Radford, S.E.3
-
84
-
-
33745899026
-
The folding pathway of spectrin R17 from experiment and simulation: Using experimentally validated MD simulations to characterize states hinted at by experiment
-
Scott KA, Randles LG, Moran SJ, Daggett V, Clarke J. The folding pathway of spectrin R17 from experiment and simulation: using experimentally validated MD simulations to characterize states hinted at by experiment. J Mol Biol 2006;359:159-173.
-
(2006)
J Mol Biol
, vol.359
, pp. 159-173
-
-
Scott, K.A.1
Randles, L.G.2
Moran, S.J.3
Daggett, V.4
Clarke, J.5
-
86
-
-
0033613165
-
A simple model for calculating the kinetics of protein folding from three-dimensional structures
-
Muñoz V, Eaton WA. A simple model for calculating the kinetics of protein folding from three-dimensional structures. Proc Natl Acad Sci USA 1999;96:11311-11316.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 11311-11316
-
-
Muñoz, V.1
Eaton, W.A.2
-
87
-
-
0032558779
-
Unfolded conformations of α-lytic protease are more stable than its native state
-
Sohl JL, Jaswal SS, Agard DA. Unfolded conformations of α-lytic protease are more stable than its native state. Nature 1998;395:817-819.
-
(1998)
Nature
, vol.395
, pp. 817-819
-
-
Sohl, J.L.1
Jaswal, S.S.2
Agard, D.A.3
-
88
-
-
0034021377
-
Two energetically disparate folding pathways of α-lytic protease share a single transition state
-
Derman AI, Agard DA. Two energetically disparate folding pathways of α-lytic protease share a single transition state. Nat Struct Biol 2000;7:394-397.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 394-397
-
-
Derman, A.I.1
Agard, D.A.2
-
89
-
-
0037122769
-
Energetic landscape of α-lytic protease optimizes longevity through kinetic stability
-
Jaswal SS, Sohl JL, Davis JH, Agard DA. Energetic landscape of α-lytic protease optimizes longevity through kinetic stability. Nature 2002;415:343-346.
-
(2002)
Nature
, vol.415
, pp. 343-346
-
-
Jaswal, S.S.1
Sohl, J.L.2
Davis, J.H.3
Agard, D.A.4
-
90
-
-
14644412777
-
Comprehensive analysis of protein folding activation thermodynamics reveals a universal behavior violated by kinetically stable proteases
-
Jaswal SS, Truhlar SM, Dill KA, Agard DA. Comprehensive analysis of protein folding activation thermodynamics reveals a universal behavior violated by kinetically stable proteases. J Mol Biol 2005; 347:355-366.
-
(2005)
J Mol Biol
, vol.347
, pp. 355-366
-
-
Jaswal, S.S.1
Truhlar, S.M.2
Dill, K.A.3
Agard, D.A.4
-
91
-
-
34047133713
-
Structural and mechanistic exploration of acid resistance: Kinetic stability facilitates evolution of extremophilic behavior
-
Kelch BA, Eagen KP, Erciyas FP, Humphris EL, Thomason AR, Mitsuiki S, Agard DA. Structural and mechanistic exploration of acid resistance: kinetic stability facilitates evolution of extremophilic behavior. J Mol Biol 2007;368:870-883.
-
(2007)
J Mol Biol
, vol.368
, pp. 870-883
-
-
Kelch, B.A.1
Eagen, K.P.2
Erciyas, F.P.3
Humphris, E.L.4
Thomason, A.R.5
Mitsuiki, S.6
Agard, D.A.7
-
92
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi R, Billeter M, Wüthrich K. MOLMOL: a program for display and analysis of macromolecular structures. J Mol Graphics 1996;14:51-55.
-
(1996)
J Mol Graphics
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
|