-
1
-
-
0037154980
-
Protein folding and unfolding at atomic resolution
-
A.R. Fersht, and V. Daggett Protein folding and unfolding at atomic resolution Cell 108 2002 573 582
-
(2002)
Cell
, vol.108
, pp. 573-582
-
-
Fersht, A.R.1
Daggett, V.2
-
2
-
-
0037686252
-
The present view of the mechanism of protein folding
-
V. Daggett, and A. Fersht The present view of the mechanism of protein folding Nature Rev. Mol. Cell. Biol. 4 2003 497 502
-
(2003)
Nature Rev. Mol. Cell. Biol.
, vol.4
, pp. 497-502
-
-
Daggett, V.1
Fersht, A.2
-
3
-
-
0026345750
-
Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition
-
S.E. Jackson, and A.R. Fersht Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition Biochemistry 30 1991 10428 10435
-
(1991)
Biochemistry
, vol.30
, pp. 10428-10435
-
-
Jackson, S.E.1
Fersht, A.R.2
-
4
-
-
0031815749
-
How do small single-domain proteins fold?
-
S.E. Jackson How do small single-domain proteins fold? Fold. Des. 3 1998 81 91
-
(1998)
Fold. Des.
, vol.3
, pp. 81-91
-
-
Jackson, S.E.1
-
5
-
-
0034628913
-
Towards a complete description of the structural and dynamic properties of the denatured state of barnase and the role of residual structure in folding
-
K.-B. Wong, J. Clarke, C.J. Bond, J.L. Neira, S.M.V. Freund, A.R. Fersht, and V. Daggett Towards a complete description of the structural and dynamic properties of the denatured state of barnase and the role of residual structure in folding J. Mol. Biol. 296 2000 1257 1282
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 1257-1282
-
-
Wong, K.-B.1
Clarke, J.2
Bond, C.J.3
Neira, J.L.4
Freund, S.M.V.5
Fersht, A.R.6
Daggett, V.7
-
6
-
-
0036401862
-
The expanded denatured state: An ensemble of conformations trapped in a locally encoded topological space
-
D. Shortle The expanded denatured state: an ensemble of conformations trapped in a locally encoded topological space Advan. Protein Chem. 62 2002 1 23
-
(2002)
Advan. Protein Chem.
, vol.62
, pp. 1-23
-
-
Shortle, D.1
-
7
-
-
1642312065
-
Determination of an ensemble of structures representing the denatured state of the bovine acyl-coenzyme a binding protein
-
K. Lindorff-Larsen, S. Kristjansdottir, K. Teilum, W. Fieber, C.M. Dobson, F.M. Poulsen, and M. Vendruscolo Determination of an ensemble of structures representing the denatured state of the bovine acyl-coenzyme a binding protein J. Am. Chem. Soc. 126 2004 3291 3299
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 3291-3299
-
-
Lindorff-Larsen, K.1
Kristjansdottir, S.2
Teilum, K.3
Fieber, W.4
Dobson, C.M.5
Poulsen, F.M.6
Vendruscolo, M.7
-
8
-
-
0031585992
-
Characterization of long-range structure in the denatured state of staphylococcal nuclease. II. Distance restraints from paramagnetic relaxation and calculation of an ensemble of structures
-
J.R. Gillespie, and D. Shortle Characterization of long-range structure in the denatured state of staphylococcal nuclease. II. Distance restraints from paramagnetic relaxation and calculation of an ensemble of structures J. Mol. Biol. 268 1997 170 184
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 170-184
-
-
Gillespie, J.R.1
Shortle, D.2
-
9
-
-
0031585990
-
Characterization of long-range structure in the denatured state of staphylococcal nuclease. I. Paramagnetic relaxation enhancement by nitroxide spin labels
-
J.R. Gillespie, and D. Shortle Characterization of long-range structure in the denatured state of staphylococcal nuclease. I. Paramagnetic relaxation enhancement by nitroxide spin labels J. Mol. Biol. 268 1997 158 169
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 158-169
-
-
Gillespie, J.R.1
Shortle, D.2
-
10
-
-
2542599277
-
Φ-Value analysis and the nature of protein-folding transition states
-
A.R. Fersht, and S. Sato Φ-Value analysis and the nature of protein-folding transition states Proc. Natl Acad. Sci. USA 101 2004 7976 7981
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 7976-7981
-
-
Fersht, A.R.1
Sato, S.2
-
11
-
-
0026511656
-
The folding of an enzyme I. Theory of protein engineering analysis of stability and pathway of protein folding
-
A.R. Fersht, A. Matouschek, and L. Serrano The folding of an enzyme I. Theory of protein engineering analysis of stability and pathway of protein folding J. Mol. Biol. 224 1992 771 782
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 771-782
-
-
Fersht, A.R.1
Matouschek, A.2
Serrano, L.3
-
12
-
-
2342525803
-
Latest folding game result: Protein a barely frustrates computationalists
-
P.G. Wolynes Latest folding game result: protein A barely frustrates computationalists Proc. Natl Acad. Sci. USA 101 2004 6837 6838
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 6837-6838
-
-
Wolynes, P.G.1
-
13
-
-
2342449128
-
Testing protein-folding simulations by experiment: B domain of protein a
-
S. Sato, T.L. Religa, V. Daggett, and A.R. Fersht Testing protein-folding simulations by experiment: B domain of protein A Proc. Natl Acad. Sci. USA 101 2004 6952 6956
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 6952-6956
-
-
Sato, S.1
Religa, T.L.2
Daggett, V.3
Fersht, A.R.4
-
15
-
-
2342655032
-
Demonstration of a low-energy on-pathway intermediate in a fast-folding protein by kinetics, protein engineering, and simulation
-
P. Jemth, S. Gianni, R. Day, B. Li, C.M. Johnson, V. Daggett, and A.R. Fersht Demonstration of a low-energy on-pathway intermediate in a fast-folding protein by kinetics, protein engineering, and simulation Proc. Natl Acad. Sci. USA 101 2004 6450 6455
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 6450-6455
-
-
Jemth, P.1
Gianni, S.2
Day, R.3
Li, B.4
Johnson, C.M.5
Daggett, V.6
Fersht, A.R.7
-
16
-
-
0026579572
-
The folding of an enzyme III. Structure of the transition state for unfolding of barnase analysed by a protein engineering procedure
-
L. Serrano, A. Matouschek, and A.R. Fersht The folding of an enzyme III. Structure of the transition state for unfolding of barnase analysed by a protein engineering procedure J. Mol. Biol. 224 1992 805 818
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 805-818
-
-
Serrano, L.1
Matouschek, A.2
Fersht, A.R.3
-
17
-
-
0022555885
-
Determination and analysis of urea and guanidine hydrochloride denaturation curves
-
C.N. Pace Determination and analysis of urea and guanidine hydrochloride denaturation curves Methods Enzymol. 131 1986 266 280
-
(1986)
Methods Enzymol.
, vol.131
, pp. 266-280
-
-
Pace, C.N.1
-
18
-
-
0014364651
-
Protein denaturation
-
C. Tanford Protein denaturation Advan. Protein Chem. 23 1968 121 282
-
(1968)
Advan. Protein Chem.
, vol.23
, pp. 121-282
-
-
Tanford, C.1
-
20
-
-
0037423705
-
Structural analysis of the rate-limiting transition states in the folding of Im7 and Im9: Similarities and differences in the folding of homologous proteins
-
C.T. Friel, A.P. Capaldi, and S.E. Radford Structural analysis of the rate-limiting transition states in the folding of Im7 and Im9: similarities and differences in the folding of homologous proteins J. Mol. Biol. 326 2003 293 305
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 293-305
-
-
Friel, C.T.1
Capaldi, A.P.2
Radford, S.E.3
-
21
-
-
0036183221
-
Im7 folding mechanism: Misfolding on a path to the native state
-
A.P. Capaldi, C. Kleanthous, and S.E. Radford Im7 folding mechanism: misfolding on a path to the native state Nature Struct. Biol. 9 2002 209 216
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 209-216
-
-
Capaldi, A.P.1
Kleanthous, C.2
Radford, S.E.3
-
22
-
-
0029041315
-
Exploring the energy surface of protein folding by structure-reactivity relationships and engineered proteins: Observation of Hammond behavior for the gross structure of the transition state and anti-Hammond behavior for structural elements for unfolding/folding of barnase
-
J.M. Matthews, and A.R. Fersht Exploring the energy surface of protein folding by structure-reactivity relationships and engineered proteins: observation of Hammond behavior for the gross structure of the transition state and anti-Hammond behavior for structural elements for unfolding/folding of barnase Biochemistry 34 1995 6805 6814
-
(1995)
Biochemistry
, vol.34
, pp. 6805-6814
-
-
Matthews, J.M.1
Fersht, A.R.2
-
23
-
-
0028868995
-
The structure of the transition state for folding of chymotrypsin inhibitor 2 analysed by protein engineering methods: Evidence for a nucleation-condensation mechanism for protein folding
-
L.S. Itzhaki, D.E. Otzen, and A.R. Fersht The structure of the transition state for folding of chymotrypsin inhibitor 2 analysed by protein engineering methods: evidence for a nucleation-condensation mechanism for protein folding J. Mol. Biol. 254 1995 260 288
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 260-288
-
-
Itzhaki, L.S.1
Otzen, D.E.2
Fersht, A.R.3
-
24
-
-
0024358426
-
Mapping the transition state of protein folding by protein engineering
-
A. Matouschek, J.T. Kellis Jr, L. Serrano, and A.R. Fersht Mapping the transition state of protein folding by protein engineering Nature 340 1989 122 126
-
(1989)
Nature
, vol.340
, pp. 122-126
-
-
Matouschek, A.1
Kellis Jr., J.T.2
Serrano, L.3
Fersht, A.R.4
-
25
-
-
0028958601
-
Characterizing transition states in protein folding: An essential step in the puzzle
-
A.R. Fersht Characterizing transition states in protein folding: an essential step in the puzzle Curr. Opin. Struct. Biol. 5 1995 79 84
-
(1995)
Curr. Opin. Struct. Biol.
, vol.5
, pp. 79-84
-
-
Fersht, A.R.1
-
26
-
-
0029981188
-
Structure of the transition state for folding of a protein derived from experiment and simulation
-
V. Daggett, A. Li, L.S. Itzhaki, D.E. Otzen, and A.R. Fersht Structure of the transition state for folding of a protein derived from experiment and simulation J. Mol. Biol. 257 1996 430 440
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 430-440
-
-
Daggett, V.1
Li, A.2
Itzhaki, L.S.3
Otzen, D.E.4
Fersht, A.R.5
-
27
-
-
0345255608
-
Unifying features in protein-folding mechanisms
-
S. Gianni, N.R. Guydosh, F. Khan, T.D. Caldas, U. Mayor, and G.W.N. White Unifying features in protein-folding mechanisms Proc. Natl Acad. Sci. USA 100 2003 13286 13291
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 13286-13291
-
-
Gianni, S.1
Guydosh, N.R.2
Khan, F.3
Caldas, T.D.4
Mayor, U.5
White, G.W.N.6
-
28
-
-
0029963345
-
Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations
-
A. Li, and V. Daggett Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations J. Mol. Biol. 257 1996 412 429
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 412-429
-
-
Li, A.1
Daggett, V.2
-
29
-
-
14844351260
-
Simulation and experiment at high temperatures: Ultrafast folding of a thermophilic protein by nucleation-condensation
-
N. Ferguson, R. Day, C.M. Johnson, M.D. Allen, V. Daggett, and A.R. Fersht Simulation and experiment at high temperatures: ultrafast folding of a thermophilic protein by nucleation-condensation J. Mol. Biol. 347 2005 855 870
-
(2005)
J. Mol. Biol.
, vol.347
, pp. 855-870
-
-
Ferguson, N.1
Day, R.2
Johnson, C.M.3
Allen, M.D.4
Daggett, V.5
Fersht, A.R.6
-
30
-
-
0032146792
-
Structure-function aspects of prion proteins
-
V. Daggett Structure-function aspects of prion proteins Curr. Opin. Biotechnol. 9 1998 359 365
-
(1998)
Curr. Opin. Biotechnol.
, vol.9
, pp. 359-365
-
-
Daggett, V.1
-
31
-
-
0028143603
-
Characterization of the transition state of protein unfolding by use of molecular dynamics: Chymotrypsin inhibitor 2
-
A. Li, and V. Daggett Characterization of the transition state of protein unfolding by use of molecular dynamics: chymotrypsin inhibitor 2 Proc. Natl Acad. Sci. USA 91 1994 10430 10434
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 10430-10434
-
-
Li, A.1
Daggett, V.2
-
32
-
-
0032579189
-
Molecular dynamics simulation of the unfolding of barnase: Characterization of the major intermediate
-
A. Li, and V. Daggett Molecular dynamics simulation of the unfolding of barnase: characterization of the major intermediate J. Mol. Biol. 275 1998 677 694
-
(1998)
J. Mol. Biol.
, vol.275
, pp. 677-694
-
-
Li, A.1
Daggett, V.2
-
33
-
-
0032812796
-
Mapping the interactions present in the transition state for unfolding/folding of FKBP12
-
K.F. Fulton, E.R.G. Main, V. Daggett, and S.E. Jackson Mapping the interactions present in the transition state for unfolding/folding of FKBP12 J. Mol. Biol. 291 1999 445 461
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 445-461
-
-
Fulton, K.F.1
Main, E.R.G.2
Daggett, V.3
Jackson, S.E.4
-
34
-
-
0342980331
-
Characterization of the unfolding pathway of the cell-cycle protein p13suc1 by molecular dynamics simulations: Implications for domain swapping
-
D.O. Alonso, E. Alm, and V. Daggett Characterization of the unfolding pathway of the cell-cycle protein p13suc1 by molecular dynamics simulations: implications for domain swapping Struct. Fold. Des. 8 2000 101 110
-
(2000)
Struct. Fold. Des.
, vol.8
, pp. 101-110
-
-
Alonso, D.O.1
Alm, E.2
Daggett, V.3
-
35
-
-
0031005061
-
The energy landscape of a fast-folding protein mapped by Ala→Gly substitutions
-
R.E. Burton, G.S. Huang, M.A. Daugherty, T.L. Calderone, and T.G. Oas The energy landscape of a fast-folding protein mapped by Ala→Gly substitutions Nature Struct. Biol. 4 1997 305 310
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 305-310
-
-
Burton, R.E.1
Huang, G.S.2
Daugherty, M.A.3
Calderone, T.L.4
Oas, T.G.5
-
36
-
-
0032708771
-
Mutational analysis of acylphosphatase suggests the importance of topology and contact order in protein folding
-
F. Chiti, N. Taddei, P.M. White, M. Bucciantini, F. Magherini, M. Stefani, and C.M. Dobson Mutational analysis of acylphosphatase suggests the importance of topology and contact order in protein folding Nature Struct. Biol. 6 1999 1005 1009
-
(1999)
Nature Struct. Biol.
, vol.6
, pp. 1005-1009
-
-
Chiti, F.1
Taddei, N.2
White, P.M.3
Bucciantini, M.4
Magherini, F.5
Stefani, M.6
Dobson, C.M.7
-
37
-
-
0034984382
-
Mapping the folding pathway of an immunoglobulin domain: Structural detail from phi value analysis and movement of the transition state
-
S.B. Fowler, and J. Clarke Mapping the folding pathway of an immunoglobulin domain: structural detail from phi value analysis and movement of the transition state Structure 9 2001 355 366
-
(2001)
Structure
, vol.9
, pp. 355-366
-
-
Fowler, S.B.1
Clarke, J.2
-
38
-
-
2442683149
-
The folding transition state of the cold shock protein is strongly polarized
-
M.M. Garcia-Mira, D. Boehringer, and F.X. Schmid The folding transition state of the cold shock protein is strongly polarized J. Mol. Biol. 339 2004 555 569
-
(2004)
J. Mol. Biol.
, vol.339
, pp. 555-569
-
-
Garcia-Mira, M.M.1
Boehringer, D.2
Schmid, F.X.3
-
39
-
-
0034671177
-
The SH3-fold family: Experimental evidence and prediction of variations in the folding pathways
-
R. Guerois, and L. Serrano The SH3-fold family: experimental evidence and prediction of variations in the folding pathways J. Mol. Biol. 304 2000 967 982
-
(2000)
J. Mol. Biol.
, vol.304
, pp. 967-982
-
-
Guerois, R.1
Serrano, L.2
-
40
-
-
0034677663
-
The folding of an immunoglobulin-like Greek-key protein is defined by a common-core nucleus and regions constrained by topology
-
S.J. Hamill, A. Steward, and J. Clarke The folding of an immunoglobulin-like Greek-key protein is defined by a common-core nucleus and regions constrained by topology J. Mol. Biol. 297 2000 165 178
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 165-178
-
-
Hamill, S.J.1
Steward, A.2
Clarke, J.3
-
41
-
-
2442659128
-
Scattered hammond plots reveal second level of site-specific information in protein folding: Φ′ (β‡)
-
L. Hedberg, and M. Oliveberg Scattered hammond plots reveal second level of site-specific information in protein folding: Φ′ (β‡) Proc. Natl Acad. Sci. USA 101 2004 7606 7611
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 7606-7611
-
-
Hedberg, L.1
Oliveberg, M.2
-
42
-
-
0035839050
-
The folding mechanism of a β-sheet: The WW domain
-
M. Jäger, H. Nguyen, J.C. Crane, J.W. Kelly, and M. Gruebele The folding mechanism of a β-sheet: the WW domain J. Mol. Biol. 311 2001 373 393
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 373-393
-
-
Jäger, M.1
Nguyen, H.2
Crane, J.C.3
Kelly, J.W.4
Gruebele, M.5
-
43
-
-
0034685619
-
A breakdown of symmetry in the folding transition state of protein L
-
D.E. Kim, C. Fisher, and D. Baker A breakdown of symmetry in the folding transition state of protein L J. Mol. Biol. 298 2000 971 984
-
(2000)
J. Mol. Biol.
, vol.298
, pp. 971-984
-
-
Kim, D.E.1
Fisher, C.2
Baker, D.3
-
44
-
-
0033015989
-
The formation of a native-like structure containing eight conserved hydrophobic residues is rate limiting in two-state protein folding of ACBP
-
B.B. Kragelund, P. Osmark, T.B. Neergaard, J. Schiødt, K. Kristiansen, J. Knudsen, and F.M. Poulsen The formation of a native-like structure containing eight conserved hydrophobic residues is rate limiting in two-state protein folding of ACBP Nature Struct. Biol. 6 1999 594 601
-
(1999)
Nature Struct. Biol.
, vol.6
, pp. 594-601
-
-
Kragelund, B.B.1
Osmark, P.2
Neergaard, T.B.3
Schiødt, J.4
Kristiansen, K.5
Knudsen, J.6
Poulsen, F.M.7
-
45
-
-
0036829967
-
Complete change of the protein folding transition state upon circular permutation
-
M. Lindberg, J. Tångrot, and M. Oliveberg Complete change of the protein folding transition state upon circular permutation Nature Struct. Biol. 9 2002 818 822
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 818-822
-
-
Lindberg, M.1
Tångrot, J.2
Oliveberg, M.3
-
46
-
-
0030334834
-
Structure of the transition state for folding of the 129 aa protein CheY resembles that of a smaller protein, CI-2
-
E. Lopez-Hernandez, and L. Serrano Structure of the transition state for folding of the 129 aa protein CheY resembles that of a smaller protein, CI-2 Fold. Des. 1 1996 43 55
-
(1996)
Fold. Des.
, vol.1
, pp. 43-55
-
-
Lopez-Hernandez, E.1
Serrano, L.2
-
47
-
-
0033604845
-
Effects of core mutations on the folding of a β-sheet protein: Implications for backbone organization in the I-state
-
M. Lorch, J.M. Mason, A.R. Clarke, and M.J. Parker Effects of core mutations on the folding of a β-sheet protein: implications for backbone organization in the I-state Biochemistry 38 1999 1377 1385
-
(1999)
Biochemistry
, vol.38
, pp. 1377-1385
-
-
Lorch, M.1
Mason, J.M.2
Clarke, A.R.3
Parker, M.J.4
-
48
-
-
0032750509
-
The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved
-
J.C. Martínez, and L. Serrano The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved Nature Struct. Biol. 6 1999 1010 1016
-
(1999)
Nature Struct. Biol.
, vol.6
, pp. 1010-1016
-
-
Martínez, J.C.1
Serrano, L.2
-
49
-
-
0037456298
-
The complete folding pathway of a protein from nanoseconds to microseconds
-
U. Mayor, N.R. Guydosh, C.M. Johnson, J.G. Grossmann, S. Sato, and G.S. Jas The complete folding pathway of a protein from nanoseconds to microseconds Nature 421 2003 863 867
-
(2003)
Nature
, vol.421
, pp. 863-867
-
-
Mayor, U.1
Guydosh, N.R.2
Johnson, C.M.3
Grossmann, J.G.4
Sato, S.5
Jas, G.S.6
-
50
-
-
0033871567
-
Critical role of β-hairpin formation in protein G folding
-
E.L. McCallister, E. Alm, and D. Baker Critical role of β-hairpin formation in protein G folding Nature Struct. Biol. 7 2000 669 673
-
(2000)
Nature Struct. Biol.
, vol.7
, pp. 669-673
-
-
McCallister, E.L.1
Alm, E.2
Baker, D.3
-
51
-
-
0028882589
-
P22 Arc repressor: Transition state properties inferred from mutational effects on the rates of protein unfolding and refolding
-
M.E. Milla, B.M. Brown, C.D. Waldburger, and R.T. Sauer P22 Arc repressor: transition state properties inferred from mutational effects on the rates of protein unfolding and refolding Biochemistry 34 1995 13914 13919
-
(1995)
Biochemistry
, vol.34
, pp. 13914-13919
-
-
Milla, M.E.1
Brown, B.M.2
Waldburger, C.D.3
Sauer, R.T.4
-
52
-
-
0036172116
-
Hydrophobic core packing in the SH3 domain folding transition state
-
J.G.B. Northey, A.A. Di Nardo, and A.R. Davidson Hydrophobic core packing in the SH3 domain folding transition state Nature Struct. Biol. 9 2002 126 130
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 126-130
-
-
Northey, J.G.B.1
Di Nardo, A.A.2
Davidson, A.R.3
-
53
-
-
0031019924
-
The folding pathway of a protein at high resolution from microseconds to seconds
-
B. Nölting, R. Golbik, J.L. Neira, A.S. Soler-Gonzalez, G. Schreiber, and A.R. Fersht The folding pathway of a protein at high resolution from microseconds to seconds Proc. Natl Acad. Sci. USA 94 1997 826 830
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 826-830
-
-
Nölting, B.1
Golbik, R.2
Neira, J.L.3
Soler-Gonzalez, A.S.4
Schreiber, G.5
Fersht, A.R.6
-
54
-
-
0036293485
-
Conformational plasticity in folding of the split β-α-β protein S6: Evidence for burst-phase disruption of the native state
-
D.E. Otzen, and M. Oliveberg Conformational plasticity in folding of the split β-α-β protein S6: evidence for burst-phase disruption of the native state J. Mol. Biol. 317 2002 613 627
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 613-627
-
-
Otzen, D.E.1
Oliveberg, M.2
-
55
-
-
0032734515
-
Experiment and theory highlight role of native state topology in SH3 folding
-
D.S. Riddle, V.P. Grantcharova, J.V. Santiago, E. Alm, I. Ruczinski, and D. Baker Experiment and theory highlight role of native state topology in SH3 folding Nature Struct. Biol. 6 1999 1016 1024
-
(1999)
Nature Struct. Biol.
, vol.6
, pp. 1016-1024
-
-
Riddle, D.S.1
Grantcharova, V.P.2
Santiago, J.V.3
Alm, E.4
Ruczinski, I.5
Baker, D.6
-
56
-
-
7044222120
-
The folding of spectrin domains II: Phi-value analysis of R16
-
K.A. Scott, L.G. Randles, and J. Clarke The folding of spectrin domains II: Phi-value analysis of R16 J. Mol. Biol. 344 2004 207 221
-
(2004)
J. Mol. Biol.
, vol.344
, pp. 207-221
-
-
Scott, K.A.1
Randles, L.G.2
Clarke, J.3
-
57
-
-
0029990293
-
The role of helix formation in the folding of a fully α-helical coiled coil
-
T.R. Sosnick, S. Jackson, R.R. Wilk, S.W. Englander, and W.F. DeGrado The role of helix formation in the folding of a fully α-helical coiled coil Proteins: Struct. Funct. Genet. 24 1996 427 432
-
(1996)
Proteins: Struct. Funct. Genet.
, vol.24
, pp. 427-432
-
-
Sosnick, T.R.1
Jackson, S.2
Wilk, R.R.3
Englander, S.W.4
Degrado, W.F.5
-
58
-
-
0033592876
-
From snapshot to movie: Φ analysis of protein folding transition states taken one step further
-
T. Ternström, U. Mayor, M. Akke, and M. Oliveberg From snapshot to movie: Φ analysis of protein folding transition states taken one step further Proc. Natl Acad. Sci. USA 96 1999 14854 14859
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 14854-14859
-
-
Ternström, T.1
Mayor, U.2
Akke, M.3
Oliveberg, M.4
-
59
-
-
0032515105
-
Structure of the transition state in the folding process of human procarboxypeptidase A2 activation domain
-
V. Villegas, J.C. Martínez, F.X. Avilés, and L. Serrano Structure of the transition state in the folding process of human procarboxypeptidase A2 activation domain J. Mol. Biol. 283 1998 1027 1036
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 1027-1036
-
-
Villegas, V.1
Martínez, J.C.2
Avilés, F.X.3
Serrano, L.4
-
60
-
-
0028327236
-
Protein folding dynamics: The diffusion-collision model and experimental data
-
M. Karplus, and D.L. Weaver Protein folding dynamics: the diffusion-collision model and experimental data Protein Sci. 3 1994 650 668
-
(1994)
Protein Sci.
, vol.3
, pp. 650-668
-
-
Karplus, M.1
Weaver, D.L.2
-
61
-
-
0033080081
-
Is protein folding hierarchic? II. Folding intermediates and transition states
-
R.L. Baldwin, and G.D. Rose Is protein folding hierarchic? II. Folding intermediates and transition states Trends Biochem. Sci. 24 1999 77 83
-
(1999)
Trends Biochem. Sci.
, vol.24
, pp. 77-83
-
-
Baldwin, R.L.1
Rose, G.D.2
-
62
-
-
0037221599
-
Is there a unifying mechanism for protein folding
-
V. Daggett, and A.R. Fersht Is there a unifying mechanism for protein folding Trends Biochem. Sci. 28 2003 18 25
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 18-25
-
-
Daggett, V.1
Fersht, A.R.2
-
63
-
-
5144225084
-
Relationship of Leffler (Brønsted) alpha values and protein folding Phi values to position of transition-state structures on reaction coordinates
-
A.R. Fersht Relationship of Leffler (Brønsted) alpha values and protein folding Phi values to position of transition-state structures on reaction coordinates Proc. Natl Acad. Sci. USA 101 2004 14338 14342
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 14338-14342
-
-
Fersht, A.R.1
-
64
-
-
0024448151
-
Calculation of protein extinction coefficients from amino acid sequence data
-
S.C. Gill, and P.H. von Hippel Calculation of protein extinction coefficients from amino acid sequence data Anal. Biochem. 182 1989 319 326
-
(1989)
Anal. Biochem.
, vol.182
, pp. 319-326
-
-
Gill, S.C.1
Von Hippel, P.H.2
-
66
-
-
0033003335
-
Protein backbone angle restraints from searching a database for chemical shift and sequence homology
-
G. Cornilescu, F. Delaglio, and A. Bax Protein backbone angle restraints from searching a database for chemical shift and sequence homology J. Biomol. NMR 13 1999 289 302
-
(1999)
J. Biomol. NMR
, vol.13
, pp. 289-302
-
-
Cornilescu, G.1
Delaglio, F.2
Bax, A.3
-
67
-
-
0023732144
-
Determinations of the three-dimensional structures of proteins from inter-proton distance data by dynamic simulated annealing from a random array of atoms. Circumventing problems associated with folding
-
M. Nilges, G.M. Clore, and A.M. Gronenborn Determinations of the three-dimensional structures of proteins from inter-proton distance data by dynamic simulated annealing from a random array of atoms. Circumventing problems associated with folding FEBS Letters 239 1988 129 136
-
(1988)
FEBS Letters
, vol.239
, pp. 129-136
-
-
Nilges, M.1
Clore, G.M.2
Gronenborn, A.M.3
-
68
-
-
0029633167
-
Potential energy function and parameters for simulations of the molecular dynamics of proteins and nucleic acids in solution
-
M. Levitt, M. Hirshberg, R. Sharon, and V. Daggett Potential energy function and parameters for simulations of the molecular dynamics of proteins and nucleic acids in solution Comput. Phys. Commun. 91 1995 215 221
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 215-221
-
-
Levitt, M.1
Hirshberg, M.2
Sharon, R.3
Daggett, V.4
-
69
-
-
0003540405
-
-
Molecular Applications Group, Palo Alto, CA.
-
Levitt, M. (1990). ENCAD, Computer Program, Energy Calculations and Dynamics. Molecular Applications Group, Palo Alto, CA.
-
(1990)
ENCAD, Computer Program, Energy Calculations and Dynamics
-
-
Levitt, M.1
-
70
-
-
0000125216
-
Calibration and testing of a water model for simulation of the molecular dynamics of proteins and nucleic acids in solution
-
M. Levitt, M. Hirshberg, R. Sharon, K.E. Laidig, and V. Daggett Calibration and testing of a water model for simulation of the molecular dynamics of proteins and nucleic acids in solution J. Phys. Chem. B 5051 1997 5061
-
(1997)
J. Phys. Chem. B
, vol.5051
, pp. 5061
-
-
Levitt, M.1
Hirshberg, M.2
Sharon, R.3
Laidig, K.E.4
Daggett, V.5
-
72
-
-
84887006810
-
A non-linear mapping for data structure analysis
-
J. Sammon A non-linear mapping for data structure analysis IEEE Trans. Comput. 18 1969 401 409
-
(1969)
IEEE Trans. Comput.
, vol.18
, pp. 401-409
-
-
Sammon, J.1
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