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Protein Engineering, Design and Selection

Volumn 18, Issue 5, 2005, Pages 229-237

Ubiquitin folds through a highly polarized transition state

(2) Went, Heather M a Jackson, Sophie E a

a Centre for Protein Engineering (United Kingdom)

Author keywords

Folding nucleus; Nucleation condensation; Transition state ensemble; Two state

Indexed keywords

COMPUTATIONAL COMPLEXITY; CONDENSATION; NUCLEATION; TRANSITION FLOW;

FOLDING NUCLEAUS; MUTATIONS; POLARIZED TRANSITION; TRANSITION STATE;

PROTEINS;

UBIQUITIN;

ALPHA HELIX; AMINO TERMINAL SEQUENCE; ARTICLE; BETA SHEET; CARBOXY TERMINAL SEQUENCE; ENERGY; MATHEMATICAL COMPUTING; MOLECULAR MODEL; MUTATION; PRIORITY JOURNAL; PROTEIN ENGINEERING; PROTEIN FOLDING; PROTEIN STRUCTURE;

KINETICS; MODELS, MOLECULAR; MUTAGENESIS; POINT MUTATION; PROTEIN ENGINEERING; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; THERMODYNAMICS; UBIQUITIN;

EID: 20844443079 PISSN: 17410126 EISSN: None Source Type: Journal
DOI: 10.1093/protein/gzi025 Document Type: Article

Times cited : (93)

References (62)

1
- 0028965968
- Alonso, D.O.V. and Daggett, V. (1995) J. Mol. Biol., 247, 501-520.
- (1995) J. Mol. Biol. , vol.247 , pp. 501-520
- Alonso, D.O.V.¹ Daggett, V.²

2
- 0031965674
- Alonso, D.O.V. and Daggett, V. (1998) Protein Sci., 7, 860-874.
- (1998) Protein Sci. , vol.7 , pp. 860-874
- Alonso, D.O.V.¹ Daggett, V.²

3
- 1842473098
- Babu, C.R., Hilser, V.J. and Wand, A.J. (2004) Nat. Struct. Mol. Biol., 11, 352-357.
- (2004) Nat. Struct. Mol. Biol. , vol.11 , pp. 352-357
- Babu, C.R.¹ Hilser, V.J.² Wand, A.J.³

4
- 0026607096
- Briggs, M.S. and Roder, H. (1992) Proc. Natl Acad. Sci. USA, 89, 2017-2021.
- (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 2017-2021
- Briggs, M.S.¹ Roder, H.²

5
- 0042508740
- Carrion-Vazquez, M., Li, H., Lu, H., Marszalek, P.E., Oberhauser, A.F. and Fernandez, J.M. (2003) Nat. Struct. Biol., 10, 738-743.
- (2003) Nat. Struct. Biol. , vol.10 , pp. 738-743
- Carrion-Vazquez, M.¹ Li, H.² Lu, H.³ Marszalek, P.E.⁴ Oberhauser, A.F.⁵ Fernandez, J.M.⁶

6
- 0036293397
- Cordier, F. and Grzesiek, S. (2002) J. Mol. Biol., 317, 739-752.
- (2002) J. Mol. Biol. , vol.317 , pp. 739-752
- Cordier, F.¹ Grzesiek, S.²

7
- 0027364930
- Cox, J.P.L., Evans, P.A., Packman, L.C., Williams, D.H. and Woolfson, D.N. (1993) J. Mol. Biol., 234, 483-492.
- (1993) J. Mol. Biol. , vol.234 , pp. 483-492
- Cox, J.P.L.¹ Evans, P.A.² Packman, L.C.³ Williams, D.H.⁴ Woolfson, D.N.⁵

8
- 0036971209
- Ermolenko, D.N., Thomas, S.T., Aurora, R., Gronenborn, A.M. and Makhatadze, G.I. (2002) J. Mol. Biol., 322, 123-135.
- (2002) J. Mol. Biol. , vol.322 , pp. 123-135
- Ermolenko, D.N.¹ Thomas, S.T.² Aurora, R.³ Gronenborn, A.M.⁴ Makhatadze, G.I.⁵

9
- 0037907569
- Ermolenko, D.N., Richardson, J.M. and Makhatadze, G.I. (2003) Protein Sci., 12, 1169-1176.
- (2003) Protein Sci. , vol.12 , pp. 1169-1176
- Ermolenko, D.N.¹ Richardson, J.M.² Makhatadze, G.I.³

10
- 0034829847
- Fernandez, A. (2001) J. Chem. Phys., 114, 2489-2502.
- (2001) J. Chem. Phys. , vol.114 , pp. 2489-2502
- Fernandez, A.¹

11
- 0036606868
- Fernandez, A. (2002) Proteins, 47, 447-457.
- (2002) Proteins , vol.47 , pp. 447-457
- Fernandez, A.¹

12
- 0036681417
- Fernandez, A. and Colubri, A. (2002) Proteins, 48, 293-310.
- (2002) Proteins , vol.48 , pp. 293-310
- Fernandez, A.¹ Colubri, A.²

13
- 1542513548
- Fernandez, J.M. and Li, H. (2004) Science, 303, 1674-1678.
- (2004) Science , vol.303 , pp. 1674-1678
- Fernandez, J.M.¹ Li, H.²

14
- 0037091023
- Fernandez, A., Colubri, A. and Berry, R.S. (2002) Physica A, 307, 235-259.
- (2002) Physica A , vol.307 , pp. 235-259
- Fernandez, A.¹ Colubri, A.² Berry, R.S.³

15
- 10644295536
- Fersht, A.R. (2004) Proc. Natl Acad. Sci. USA, 101, 17327-17328.
- (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 17327-17328
- Fersht, A.R.¹

16
- 0026511656
- Fersht A.R., Matouschek, A. and Serrano, L. (1992) J. Mol. Biol., 224, 771-782.
- (1992) J. Mol. Biol. , vol.224 , pp. 771-782
- Fersht, A.R.¹ Matouschek, A.² Serrano, L.³

17
- 0032812796
- Fulton, K.F., Main, E.R.G., Daggett, V. and Jackson, S.E. (1999) J. Mol. Biol., 291, 445-461.
- (1999) J. Mol. Biol. , vol.291 , pp. 445-461
- Fulton, K.F.¹ Main, E.R.G.² Daggett, V.³ Jackson, S.E.⁴

18
- 0035255016
- Gilis, D. and Rooman, M. (2001) Proteins, 42, 164-176.
- (2001) Proteins , vol.42 , pp. 164-176
- Gilis, D.¹ Rooman, M.²

19
- 0030322627
- Gladwin, S.T. and Evans, P.A. (1996) Fold. Des., 1, 407-417.
- (1996) Fold. Des. , vol.1 , pp. 407-417
- Gladwin, S.T.¹ Evans, P.A.²

20
- 0025731274
- Harding, M.M., Williams, D.H. and Woolfson, D.N. (1991) Biochemistry, 30, 3120-3128.
- (1991) Biochemistry , vol.30 , pp. 3120-3128
- Harding, M.M.¹ Williams, D.H.² Woolfson, D.N.³

21
- 0028868995
- Itzhaki, L.S., Otzen, D.E. and Fersht, A.R. (1995) J. Mol. Biol., 254, 260-288.
- (1995) J. Mol. Biol. , vol.254 , pp. 260-288
- Itzhaki, L.S.¹ Otzen, D.E.² Fersht, A.R.³

22
- 0026345750
- Jackson, S.E. and Fersht, A.R. (1991) Biochemistry, 30, 10428-10435.
- (1991) Biochemistry , vol.30 , pp. 10428-10435
- Jackson, S.E.¹ Fersht, A.R.²

23
- 0027382315
- Jackson, S.E., elMasry, N. and Fersht, A.R. (1993) Biochemistry, 32, 11270-11278.
- (1993) Biochemistry , vol.32 , pp. 11270-11278
- Jackson, S.E.¹ Elmasry, N.² Fersht, A.R.³

24
- 0037171119
- Jonas, J. (2002) Biochim. Biophys. Acta, 1595, 145-159.
- (2002) Biochim. Biophys. Acta , vol.1595 , pp. 145-159
- Jonas, J.¹

25
- 0034633950
- Jourdan, M. and Searle, M.S. (2000) Biochemistry, 39, 12355-12364.
- (2000) Biochemistry , vol.39 , pp. 12355-12364
- Jourdan, M.¹ Searle, M.S.²

26
- 0035964184
- Jourdan, M. and Searle, M.S. (2001) Biochemistry, 40, 10317-10325.
- (2001) Biochemistry , vol.40 , pp. 10317-10325
- Jourdan, M.¹ Searle, M.S.²

27
- 0000901301
- Jourdan, M., Griffiths-Jones, S.R. and Searle, M.S. (2000) Eur. J. Biochem., 267, 3539-3548.
- (2000) Eur. J. Biochem. , vol.267 , pp. 3539-3548
- Jourdan, M.¹ Griffiths-Jones, S.R.² Searle, M.S.³

28
- 0027305989
- Khorasanizadeh, S., Peters, I.D., Butt, T.R. and Roder, H. (1993) Biochemistry, 32, 7054-7063.
- (1993) Biochemistry , vol.32 , pp. 7054-7063
- Khorasanizadeh, S.¹ Peters, I.D.² Butt, T.R.³ Roder, H.⁴

29
- 0030057477
- Khorasanizadeh, S., Peters, I.D. and Roder, H. (1996) Nat. Struct. Biol., 3, 193-205.
- (1996) Nat. Struct. Biol. , vol.3 , pp. 193-205
- Khorasanizadeh, S.¹ Peters, I.D.² Roder, H.³

30
- 0037452877
- Kitahara, R. and Akasaka, K. (2003) Proc. Natl Acad. Sci. USA, 100, 3167-3172.
- (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 3167-3172
- Kitahara, R.¹ Akasaka, K.²

31
- 0034718524
- Krantz, B.A. and Sosnick, T.R. (2000) Biochemistry, 39, 11696-11701.
- (2000) Biochemistry , vol.39 , pp. 11696-11701
- Krantz, B.A.¹ Sosnick, T.R.²

32
- 0033986637
- Krantz, B.A., Moran, L.B., Kentsis, A. and Sosnick, T.R. (2000) Nat. Struct. Biol., 7, 62-71.
- (2000) Nat. Struct. Biol. , vol.7 , pp. 62-71
- Krantz, B.A.¹ Moran, L.B.² Kentsis, A.³ Sosnick, T.R.⁴

33
- 1442348207
- Krantz, B.A., Dothager, R.S. and Sosnick, T.R. (2004) J. Mol. Biol., 337, 463-475.
- (2004) J. Mol. Biol. , vol.337 , pp. 463-475
- Krantz, B.A.¹ Dothager, R.S.² Sosnick, T.R.³

34
- 15244356868
- Krantz, B.A., Dothager, R.S. and Sosnick, T.R. (2005) J. Mol. Biol., 347, 1103.
- (2005) J. Mol. Biol. , vol.347 , pp. 1103
- Krantz, B.A.¹ Dothager, R.S.² Sosnick, T.R.³

35
- 0036295887
- Larson, S.M., Ruczinski, I., Davidson, A.R., Baker, D. and Plaxco, K.W. (2002) J. Mol. Biol., 316, 225-233.
- (2002) J. Mol. Biol. , vol.316 , pp. 225-233
- Larson, S.M.¹ Ruczinski, I.² Davidson, A.R.³ Baker, D.⁴ Plaxco, K.W.⁵

36
- 0028143603
- Li, A.J. and Daggett, V. (1994) Proc. Natl Acad. Sci. USA, 91, 10430-10434.
- (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 10430-10434
- Li, A.J.¹ Daggett, V.²

37
- 0029963345
- Li, A.J. and Daggett, V. (1996) J. Mol. Biol., 257, 412-429.
- (1996) J. Mol. Biol. , vol.257 , pp. 412-429
- Li, A.J.¹ Daggett, V.²

38
- 0036136161
- Loladze, V.V. and Makhatadze, G.I. (2002) Protein Sci., 11, 174-177.
- (2002) Protein Sci. , vol.11 , pp. 174-177
- Loladze, V.V.¹ Makhatadze, G.I.²

39
- 0033554840
- Loladze, V.V., Ibarra-Molero, B., Sanchez-Ruiz, J.M. and Makhatadze, G.I. (1999) Biochemistry, 38, 16419-16423.
- (1999) Biochemistry , vol.38 , pp. 16419-16423
- Loladze, V.V.¹ Ibarra-Molero, B.² Sanchez-Ruiz, J.M.³ Makhatadze, G.I.⁴

40
- 0036297743
- Loladze, V.V., Ermolenko, D.N. and Makhatadze, G.I. (2002) J. Mol. Biol., 320, 343-357.
- (2002) J. Mol. Biol. , vol.320 , pp. 343-357
- Loladze, V.V.¹ Ermolenko, D.N.² Makhatadze, G.I.³

41
- 0032799756
- Main, E.R.G., Fulton, K.F. and Jackson, S.E. (1999) J. Mol. Biol., 291, 429-444.
- (1999) J. Mol. Biol. , vol.291 , pp. 429-444
- Main, E.R.G.¹ Fulton, K.F.² Jackson, S.E.³

42
- 0037432563
- Makhatadze, G.I., Loladze, V.V., Ermolenko, D.N., Chen, X.F. and Thomas, S.T. (2003) J. Mol. Biol., 327, 1135-1148.
- (2003) J. Mol. Biol. , vol.327 , pp. 1135-1148
- Makhatadze, G.I.¹ Loladze, V.V.² Ermolenko, D.N.³ Chen, X.F.⁴ Thomas, S.T.⁵

43
- 0024358426
- Matouschek, A., Kellis, J.T., Jr, Serrano, L. and Fersht, A.R. (1989) Nature, 342, 122-126.
- (1989) Nature , vol.342 , pp. 122-126
- Matouschek, A.¹ Kellis Jr., J.T.² Serrano, L.³ Fersht, A.R.⁴

44
- 2942578115
- Matthews, C.R. (1987) Methods Enzymol., 154, 489-511.
- (1987) Methods Enzymol. , vol.154 , pp. 489-511
- Matthews, C.R.¹

45
- 0031867090
- Michnick, S.W. and Shakhnovich, E. (1998) Fold. Des., 3, 239-251.
- (1998) Fold. Des. , vol.3 , pp. 239-251
- Michnick, S.W.¹ Shakhnovich, E.²

46
- 0035957514
- Mirny, L. and Shakhnovich, E. (2001) J. Mol. Biol., 308, 123-129.
- (2001) J. Mol. Biol. , vol.308 , pp. 123-129
- Mirny, L.¹ Shakhnovich, E.²

47
- 0035252685
- Oliveberg, M. (2001) Curr. Opin. Struct. Biol., 11, 94-100.
- (2001) Curr. Opin. Struct. Biol. , vol.11 , pp. 94-100
- Oliveberg, M.¹

48
- 0034724558
- Plaxco, K.W., Larson, S., Ruczinski, I., Riddle, D.S., Thayer, E.C., Buchwitz, B., Davidson, A.R. and Baker, D. (2000) J. Mol. Biol., 298, 303-312.
- (2000) J. Mol. Biol. , vol.298 , pp. 303-312
- Plaxco, K.W.¹ Larson, S.² Ruczinski, I.³ Riddle, D.S.⁴ Thayer, E.C.⁵ Buchwitz, B.⁶ Davidson, A.R.⁷ Baker, D.⁸

49
- 0035793221
- Prompers, J.J., Scheurer, C. and Bruschweiler, R. (2001) J. Mol. Biol., 305, 1085-1097.
- (2001) J. Mol. Biol. , vol.305 , pp. 1085-1097
- Prompers, J.J.¹ Scheurer, C.² Bruschweiler, R.³

50
- 0028865129
- Searle, M.S., Williams, D.H. and Packman, L.C. (1995) Nat. Struct. Biol., 2, 999-1006.
- (1995) Nat. Struct. Biol. , vol.2 , pp. 999-1006
- Searle, M.S.¹ Williams, D.H.² Packman, L.C.³

51
- 0026579572
- Serrano, L., Matouschek, A. and Fersht, A.R. (1992) J. Mol. Biol., 224, 805-818.
- (1992) J. Mol. Biol. , vol.224 , pp. 805-818
- Serrano, L.¹ Matouschek, A.² Fersht, A.R.³

52
- 0029670994
- Shakhnovich, E.I., Abkevich, V. and Ptitsyn, O. (1996) Nature, 379, 96-98.
- (1996) Nature , vol.379 , pp. 96-98
- Shakhnovich, E.I.¹ Abkevich, V.² Ptitsyn, O.³

53
- 0035075187
- Sivaraman, T., Arrington, C.B. and Robertson, A.D. (2001) Nat. Struct. Biol., 8, 331-333.
- (2001) Nat. Struct. Biol. , vol.8 , pp. 331-333
- Sivaraman, T.¹ Arrington, C.B.² Robertson, A.D.³

54
- 0036499417
- Sorensen, J.M. and Head-Gordon, T. (2002) Proteins, 46, 368-379.
- (2002) Proteins , vol.46 , pp. 368-379
- Sorensen, J.M.¹ Head-Gordon, T.²

55
- 0036783412
- Sosnick, T.R., Berry, R.S., Colubri, A. and Fernandez, A. (2002) Proteins, 49, 15-23.
- (2002) Proteins , vol.49 , pp. 15-23
- Sosnick, T.R.¹ Berry, R.S.² Colubri, A.³ Fernandez, A.⁴

56
- 10644261303
- Sosnick, T.R., Dothager, R.S. and Krantz, B.A. (2004) Proc. Natl Acad. Sci. USA, 101, 17377-17382.
- (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 17377-17382
- Sosnick, T.R.¹ Dothager, R.S.² Krantz, B.A.³

57
- 0014364651
- Tanford, C. (1968) Adv. Protein Chem., 23, 121-282.
- (1968) Adv. Protein Chem. , vol.23 , pp. 121-282
- Tanford, C.¹

58
- 0014718113
- Tanford, C. (1970) Adv. Protein Chem., 24, 1-95.
- (1970) Adv. Protein Chem. , vol.24 , pp. 1-95
- Tanford, C.¹

59
- 2942617191
- Went, H.M., Benitez-Cardoza, C.B. and Jackson, S.E. (2004) FEBS Lett., 567, 333-338.
- (2004) FEBS Lett. , vol.567 , pp. 333-338
- Went, H.M.¹ Benitez-Cardoza, C.B.² Jackson, S.E.³

60
- 0027411034
- Woolfson, D.N., Cooper, A., Harding, M.M., Williams, D.H. and Evans, P.A. (1993) J. Mol. Biol., 229, 502-511.
- (1993) J. Mol. Biol. , vol.229 , pp. 502-511
- Woolfson, D.N.¹ Cooper, A.² Harding, M.M.³ Williams, D.H.⁴ Evans, P.A.⁵

61
- 0033028620
- Zerella, R., Evans, P.A., Ionides, J.M.C., Packman, L.C., Trotter, B.W., Mackay, J.P. and Williams, D.H. (1999) Protein Sci., 8, 1320-1331.
- (1999) Protein Sci. , vol.8 , pp. 1320-1331
- Zerella, R.¹ Evans, P.A.² Ionides, J.M.C.³ Packman, L.C.⁴ Trotter, B.W.⁵ Mackay, J.P.⁶ Williams, D.H.⁷

62
- 0034489543
- Zerella, R., Chen, P.Y., Evans, P.A., Raine, A. and Williams, D.H. (2000) Protein Sci., 9, 2142-2150.
- (2000) Protein Sci. , vol.9 , pp. 2142-2150
- Zerella, R.¹ Chen, P.Y.² Evans, P.A.³ Raine, A.⁴ Williams, D.H.⁵

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