-
2
-
-
0242578172
-
Intimate view of a kinetic protein folding intermediate: Residue-resolved structure, interactions, stability, folding and unfolding rates, homogeneity
-
M.M.G. Krishna, Y. Lin, L. Mayne, and S.W. Englander Intimate view of a kinetic protein folding intermediate: residue-resolved structure, interactions, stability, folding and unfolding rates, homogeneity J. Mol. Biol. 334 2003 501 513
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 501-513
-
-
Krishna, M.M.G.1
Lin, Y.2
Mayne, L.3
Englander, S.W.4
-
3
-
-
0037172946
-
Using deeply trapped intermediates to map the cytochrome c folding landscape
-
F.A. Tezcan, W.M. Findley, B.R. Crane, S.A. Ross, J.G. Lyubovitsky, H.B. Gray, and J.R. Winkler Using deeply trapped intermediates to map the cytochrome c folding landscape Proc. Natl Acad. Sci. USA 99 2002 8626 8630
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 8626-8630
-
-
Tezcan, F.A.1
Findley, W.M.2
Crane, B.R.3
Ross, S.A.4
Lyubovitsky, J.G.5
Gray, H.B.6
Winkler, J.R.7
-
4
-
-
0036293508
-
The cytochrome c folding landscape revealed by electron- transfer kinetics
-
J.C. Lee, I.J. Chang, H.B. Gray, and J.R. Winkler The cytochrome c folding landscape revealed by electron- transfer kinetics J. Mol. Biol. 320 2002 159 164
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 159-164
-
-
Lee, J.C.1
Chang, I.J.2
Gray, H.B.3
Winkler, J.R.4
-
5
-
-
0031095826
-
Rate of intrachain diffusion of unfolded cytochrome c
-
S.J. Hagen, J. Hofrichter, and W.A. Eaton Rate of intrachain diffusion of unfolded cytochrome c J. Phys. Chem. B 101 1997 2352 2365
-
(1997)
J. Phys. Chem. B
, vol.101
, pp. 2352-2365
-
-
Hagen, S.J.1
Hofrichter, J.2
Eaton, W.A.3
-
6
-
-
0029964867
-
Diffusion-limited contact formation in unfolded cytochrome c: Estimating the maximum rate of protein folding
-
S.J. Hagen, J. Hofrichter, A. Szabo, and W.A. Eaton Diffusion-limited contact formation in unfolded cytochrome c: estimating the maximum rate of protein folding Proc. Natl Acad. Sci. USA 93 1996 11615 11617
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 11615-11617
-
-
Hagen, S.J.1
Hofrichter, J.2
Szabo, A.3
Eaton, W.A.4
-
7
-
-
0037675765
-
Parallel pathways in cytochrome c(551) folding
-
S. Gianni, C. Travaglini-Allocateli, F. Cutruzzolla, M. Brunori, M.C.R. Shastry, and H. Roder Parallel pathways in cytochrome c(551) folding J. Mol. Biol. 330 2003 1145 1152
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 1145-1152
-
-
Gianni, S.1
Travaglini-Allocateli, C.2
Cutruzzolla, F.3
Brunori, M.4
Shastry, M.C.R.5
Roder, H.6
-
8
-
-
0033535839
-
Cytochrome b(562) folding triggered by electron transfer: Approaching the speed limit for formation of a four-helix- bundle protein
-
P. Wittung-Stafshede, J.C. Lee, J.R. Winkler, and H.B. Gray Cytochrome b(562) folding triggered by electron transfer: approaching the speed limit for formation of a four-helix- bundle protein Proc. Natl Acad. Sci. USA 96 1999 6587 6590
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 6587-6590
-
-
Wittung-Stafshede, P.1
Lee, J.C.2
Winkler, J.R.3
Gray, H.B.4
-
9
-
-
0033587495
-
Defining folding and unfolding reactions of apocytochrome b(5) using equilibrium and kinetic fluorescence measurements
-
S. Manyusa, and D. Whitford Defining folding and unfolding reactions of apocytochrome b(5) using equilibrium and kinetic fluorescence measurements Biochemistry 38 1999 9533 9540
-
(1999)
Biochemistry
, vol.38
, pp. 9533-9540
-
-
Manyusa, S.1
Whitford, D.2
-
10
-
-
0033607191
-
Analysis of folding and unfolding reactions of cytochrome b(5)
-
S. Manyusa, G. Mortuza, and D. Whitford Analysis of folding and unfolding reactions of cytochrome b(5) Biochemistry 38 1999 14352 14362
-
(1999)
Biochemistry
, vol.38
, pp. 14352-14362
-
-
Manyusa, S.1
Mortuza, G.2
Whitford, D.3
-
11
-
-
0242321015
-
Role of the B helix in early folding events in apomyoglobin: Evidence from site-directed mutagenesis for native-like long range interactions
-
C. Nishimura, P.E. Wright, and H.J. Dyson Role of the B helix in early folding events in apomyoglobin: evidence from site-directed mutagenesis for native-like long range interactions J. Mol. Biol. 334 2003 293 307
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 293-307
-
-
Nishimura, C.1
Wright, P.E.2
Dyson, H.J.3
-
12
-
-
0035957221
-
NMR structural and dynamic characterization of the acid-unfolded state of apomyoglobin provides insights into the early events in protein folding
-
J. Yao, J. Chung, D. Eliezer, P.E. Wright, and H.J. Dyson NMR structural and dynamic characterization of the acid-unfolded state of apomyoglobin provides insights into the early events in protein folding Biochemistry 40 2001 3561 3571
-
(2001)
Biochemistry
, vol.40
, pp. 3561-3571
-
-
Yao, J.1
Chung, J.2
Eliezer, D.3
Wright, P.E.4
Dyson, H.J.5
-
13
-
-
0036382667
-
The apomyoglobin folding pathway revisited: Structural heterogeneity in the kinetic burst phase intermediate
-
C. Nishimura, H.J. Dyson, and P.E. Wright The apomyoglobin folding pathway revisited: structural heterogeneity in the kinetic burst phase intermediate J. Mol. Biol. 322 2002 483 489
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 483-489
-
-
Nishimura, C.1
Dyson, H.J.2
Wright, P.E.3
-
15
-
-
0036428782
-
Simulation of folding of a small alpha-helical protein in atomistic detail using worldwide-distributed computing
-
B. Zagrovic, C.D. Snow, M.R. Shirts, and V.S. Pande Simulation of folding of a small alpha-helical protein in atomistic detail using worldwide- distributed computing J. Mol. Biol. 323 2002 927 937
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 927-937
-
-
Zagrovic, B.1
Snow, C.D.2
Shirts, M.R.3
Pande, V.S.4
-
16
-
-
0037235952
-
Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing
-
V.S. Pande, I. Baker, J. Chapman, S.P. Elmer, S. Khaliq, and S.M. Larson Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing Biopolymers 68 2003 91 109
-
(2003)
Biopolymers
, vol.68
, pp. 91-109
-
-
Pande, V.S.1
Baker, I.2
Chapman, J.3
Elmer, S.P.4
Khaliq, S.5
Larson, S.M.6
-
17
-
-
0036394906
-
Native-like mean structure in the unfolded ensemble of small proteins
-
B. Zagrovic, C.D. Snow, S. Khaliq, M.R. Shirts, and V.S. Pande Native-like mean structure in the unfolded ensemble of small proteins J. Mol. Biol. 323 2002 153 164
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 153-164
-
-
Zagrovic, B.1
Snow, C.D.2
Khaliq, S.3
Shirts, M.R.4
Pande, V.S.5
-
18
-
-
0032561237
-
Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution
-
Y. Duan, and P.A. Kollman Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution Science 282 1998 740 744
-
(1998)
Science
, vol.282
, pp. 740-744
-
-
Duan, Y.1
Kollman, P.A.2
-
19
-
-
0345255608
-
Unifying features in protein-folding mechanisms
-
S. Gianni, N.R. Guydosh, F. Khan, T.D. Caldas, U. Mayor, and G.W.N. White Unifying features in protein-folding mechanisms Proc. Natl Acad. Sci. USA 100 2003 13286 13291
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 13286-13291
-
-
Gianni, S.1
Guydosh, N.R.2
Khan, F.3
Caldas, T.D.4
Mayor, U.5
White, G.W.N.6
-
20
-
-
0034610360
-
Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation
-
U. Mayor, C.M. Johnson, V. Daggett, and A.R. Fersht Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation Proc. Natl Acad. Sci. USA 97 2000 13518 13522
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 13518-13522
-
-
Mayor, U.1
Johnson, C.M.2
Daggett, V.3
Fersht, A.R.4
-
21
-
-
0037456298
-
The complete folding pathway of a protein from nanoseconds to microseconds
-
U. Mayor, N.R. Guydosh, C.M. Johnson, J.G. Grossmann, S. Sato, and G.S. Jas The complete folding pathway of a protein from nanoseconds to microseconds Nature 421 2003 863 867
-
(2003)
Nature
, vol.421
, pp. 863-867
-
-
Mayor, U.1
Guydosh, N.R.2
Johnson, C.M.3
Grossmann, J.G.4
Sato, S.5
Jas, G.S.6
-
22
-
-
0030967896
-
Exploring the free energy surface of a three-helix bundle protein
-
Z. Guo, C.L. Brooks III, and E.M. Boczko Exploring the free energy surface of a three-helix bundle protein Proc. Natl Acad. Sci. USA 94 1997 10161 10166
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 10161-10166
-
-
Guo, Z.1
Brooks III, C.L.2
Boczko, E.M.3
-
23
-
-
0028326042
-
Monte carlo simulations of protein folding. II. Application to protein A, ROP and crambin
-
A. Kolinski, and J. Skolnick Monte carlo simulations of protein folding. II. Application to protein A, ROP and crambin Proteins: Struct. Funct. Genet. 18 1994 353 366
-
(1994)
Proteins: Struct. Funct. Genet.
, vol.18
, pp. 353-366
-
-
Kolinski, A.1
Skolnick, J.2
-
24
-
-
0034602807
-
Staphylococcal protein A: Unfolding pathways, unfolded states, and differences between the B and e domains
-
D.O.V. Alonso, and V. Daggett Staphylococcal protein A: unfolding pathways, unfolded states, and differences between the B and E domains Proc. Natl Acad. Sci. USA 97 2000 133 138
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 133-138
-
-
Alonso, D.O.V.1
Daggett, V.2
-
25
-
-
0035005366
-
Preorganised secondary structure as an important determinant of fast protein folding
-
J.K. Myers, and T.G. Oas Preorganised secondary structure as an important determinant of fast protein folding Nature Struct. Biol. 8 2001 552 558
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 552-558
-
-
Myers, J.K.1
Oas, T.G.2
-
26
-
-
0030755502
-
Absence of a stable intermediate on the folding pathway of protein a
-
Y. Bai, A. Karimi, H.J. Dyson, and P.E. Wright Absence of a stable intermediate on the folding pathway of protein A Protein Sci. 6 1997 1449 1457
-
(1997)
Protein Sci.
, vol.6
, pp. 1449-1457
-
-
Bai, Y.1
Karimi, A.2
Dyson, H.J.3
Wright, P.E.4
-
27
-
-
0036307683
-
Application of the diffusion-collision model to the folding of three-helix bundle proteins
-
S.A. Islam, M. Karplus, and D.L. Weaver Application of the diffusion-collision model to the folding of three-helix bundle proteins J. Mol. Biol. 318 2002 199 215
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 199-215
-
-
Islam, S.A.1
Karplus, M.2
Weaver, D.L.3
-
28
-
-
0029965111
-
Fast and one-step folding of closely and distantly related homologous proteins of a four-helix bundle family
-
B.B. Kragelund, P. Hojrup, M.S. Jensen, C.K. Schjerling, E. Juul, J. Knudsen, and F.M. Poulsen Fast and one-step folding of closely and distantly related homologous proteins of a four-helix bundle family J. Mol. Biol. 256 1996 187 200
-
(1996)
J. Mol. Biol.
, vol.256
, pp. 187-200
-
-
Kragelund, B.B.1
Hojrup, P.2
Jensen, M.S.3
Schjerling, C.K.4
Juul, E.5
Knudsen, J.6
Poulsen, F.M.7
-
29
-
-
0033015989
-
The formation of a native-like structure containing eight conserved hydrophobic residues is rate limiting in two-state protein folding of ACBP
-
B.B. Kragelund, P. Osmark, T.B. Neergaard, J. Schiodt, K. Kristiansen, J. Knudsen, and F.M. Poulsen The formation of a native-like structure containing eight conserved hydrophobic residues is rate limiting in two-state protein folding of ACBP Nature Struct. Biol. 6 1999 594 601
-
(1999)
Nature Struct. Biol.
, vol.6
, pp. 594-601
-
-
Kragelund, B.B.1
Osmark, P.2
Neergaard, T.B.3
Schiodt, J.4
Kristiansen, K.5
Knudsen, J.6
Poulsen, F.M.7
-
30
-
-
0037162450
-
Early kinetic intermediate in the folding of acyl-CoA binding protein detected by fluorescence labeling and ultrarapid mixing
-
K. Teilum, K. Maki, B.B. Kragelund, F.M. Poulsen, and H. Roder Early kinetic intermediate in the folding of acyl-CoA binding protein detected by fluorescence labeling and ultrarapid mixing Proc. Natl Acad. Sci. USA 99 2002 9807 9812
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 9807-9812
-
-
Teilum, K.1
Maki, K.2
Kragelund, B.B.3
Poulsen, F.M.4
Roder, H.5
-
31
-
-
0037423705
-
Structural analysis of the rate-limiting transition states in the folding of lm7 and lm9: Similarities and differences in the folding of homologous proteins
-
C.T. Friel, A.P. Capaldi, and S.E. Radford Structural analysis of the rate-limiting transition states in the folding of lm7 and lm9: similarities and differences in the folding of homologous proteins J. Mol. Biol. 326 2003 293 305
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 293-305
-
-
Friel, C.T.1
Capaldi, A.P.2
Radford, S.E.3
-
32
-
-
0036183221
-
Im7 folding mechanism: Misfolding on a path to the native state
-
A.P. Capaldi, C. Kleanthous, and S.E. Radford Im7 folding mechanism: misfolding on a path to the native state Nature Struct. Biol. 9 2002 209 216
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 209-216
-
-
Capaldi, A.P.1
Kleanthous, C.2
Radford, S.E.3
-
33
-
-
0035965128
-
Acidic conditions stabilise intermediates populated during the folding of Im7 and Im9
-
S.A. Gorski, A.P. Capaldi, C. Kleanthous, and S.E. Radford Acidic conditions stabilise intermediates populated during the folding of Im7 and Im9 J. Mol. Biol. 312 2001 849 863
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 849-863
-
-
Gorski, S.A.1
Capaldi, A.P.2
Kleanthous, C.3
Radford, S.E.4
-
34
-
-
0035170463
-
Ultrarapid mixing experiments reveal that Im7 folds via an on- pathway intermediate
-
A.P. Capaldi, M.C.R. Shastry, C. Kleanthous, H. Roder, and S.E. Radford Ultrarapid mixing experiments reveal that Im7 folds via an on- pathway intermediate Nature Struct. Biol. 8 2001 68 72
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 68-72
-
-
Capaldi, A.P.1
Shastry, M.C.R.2
Kleanthous, C.3
Roder, H.4
Radford, S.E.5
-
35
-
-
0035896036
-
Using chimeric immunity proteins to explore the energy landscape for alpha-helical protein folding
-
N. Ferguson, W. Li, A.P. Capaldi, C. Kleanthous, and S.E. Radford Using chimeric immunity proteins to explore the energy landscape for alpha-helical protein folding J. Mol. Biol. 307 2001 393 405
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 393-405
-
-
Ferguson, N.1
Li, W.2
Capaldi, A.P.3
Kleanthous, C.4
Radford, S.E.5
-
36
-
-
0033548553
-
Rapid folding with and without populated intermediates in the homologous four-helix proteins Im7 and Im9
-
N. Ferguson, A.P. Capaldi, R. James, C. Kleanthous, and S.E. Radford Rapid folding with and without populated intermediates in the homologous four-helix proteins Im7 and Im9 J. Mol. Biol. 286 1999 1597 1608
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 1597-1608
-
-
Ferguson, N.1
Capaldi, A.P.2
James, R.3
Kleanthous, C.4
Radford, S.E.5
-
37
-
-
0032843763
-
Transition state hetereogeneity in GCN4 coiled coil folding studied using multisite mutations and crosslinking
-
L.B. Moran, J.P. Schneider, A. Kentis, G.A. Reddy, and T.R. Sosnick Transition state hetereogeneity in GCN4 coiled coil folding studied using multisite mutations and crosslinking Biochemistry 96 1999 10699 10704
-
(1999)
Biochemistry
, vol.96
, pp. 10699-10704
-
-
Moran, L.B.1
Schneider, J.P.2
Kentis, A.3
Reddy, G.A.4
Sosnick, T.R.5
-
38
-
-
0035191642
-
Engineered metal binding sites map the heterogeneous folding landscape of a coiled coil
-
B.A. Krantz, and T.R. Sosnick Engineered metal binding sites map the heterogeneous folding landscape of a coiled coil Nature Struct. Biol. 8 2001 1042 1047
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 1042-1047
-
-
Krantz, B.A.1
Sosnick, T.R.2
-
39
-
-
0029990293
-
The role of helix formation in the folding of a fully alpha-helical coiled coil
-
T.R. Sosnick, S. Jackson, R.R. Wilk, S.W. Englander, and W.F. DeGrado The role of helix formation in the folding of a fully alpha-helical coiled coil Proteins: Struct. Funct. Genet. 24 1996 427 432
-
(1996)
Proteins: Struct. Funct. Genet.
, vol.24
, pp. 427-432
-
-
Sosnick, T.R.1
Jackson, S.2
Wilk, R.R.3
Englander, S.W.4
Degrado, W.F.5
-
40
-
-
0034598940
-
Preformed secondary structure drives the association reaction of the GCN4-p1, a model coiled-coil system
-
J.A. Zitzewitz, B. Ibarra-Molero, D.R. Fishel, K.L. Terry, and C.R. Matthews Preformed secondary structure drives the association reaction of the GCN4-p1, a model coiled-coil system J. Mol. Biol. 296 2000 1105 1116
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 1105-1116
-
-
Zitzewitz, J.A.1
Ibarra-Molero, B.2
Fishel, D.R.3
Terry, K.L.4
Matthews, C.R.5
-
41
-
-
0028783624
-
Probing the folding mechanism of a leucine zipper by stopped-flow circular dichroism
-
J.A. Zitzewitz, O. Bilsen, J. Luo, B.E. Jones, and C.R. Matthews Probing the folding mechanism of a leucine zipper by stopped-flow circular dichroism Biochemistry 34 1995 12812 12819
-
(1995)
Biochemistry
, vol.34
, pp. 12812-12819
-
-
Zitzewitz, J.A.1
Bilsen, O.2
Luo, J.3
Jones, B.E.4
Matthews, C.R.5
-
43
-
-
1042279571
-
Comparison of the transition state ensembles for folding of Im7 and Im9 determined using all-atom molecular dynamics simulations with phi value restraints
-
E. Paci, C.T. Friel, K. Lindorff-Larsen, S.E. Radford, M. Karplus, and M. Vendruscolo Comparison of the transition state ensembles for folding of Im7 and Im9 determined using all-atom molecular dynamics simulations with phi value restraints Proteins: Struct. Funct. Genet. 54 2004 513 525
-
(2004)
Proteins: Struct. Funct. Genet.
, vol.54
, pp. 513-525
-
-
Paci, E.1
Friel, C.T.2
Lindorff-Larsen, K.3
Radford, S.E.4
Karplus, M.5
Vendruscolo, M.6
-
44
-
-
7044226061
-
The folding of spectrin domains I. Wild-type domains have the same stability but very different kinetic properties
-
Scott, K. A., Batey, S., Hooten, K. A., Clarke, J. (2004). The folding of spectrin domains I. Wild-type domains have the same stability but very different kinetic properties. J. Mol. Biol. 344 (this issue).
-
(2004)
J. Mol. Biol.
, vol.344
, Issue.THIS ISSUE
-
-
Scott, K.A.1
Batey, S.2
Hooten, K.A.3
Clarke, J.4
-
46
-
-
0029041315
-
Exploring the energy surface of protein folding by structure-reactivity relationships and engineered proteins: Observation of Hammond behavior for the gross structure of the transition state and anti-Hammond behavior for structural elements for unfolding/folding of barnase
-
J.M. Matthews, and A.R. Fersht Exploring the energy surface of protein folding by structure-reactivity relationships and engineered proteins: observation of Hammond behavior for the gross structure of the transition state and anti-Hammond behavior for structural elements for unfolding/folding of barnase Biochemistry 34 1995 6805 6814
-
(1995)
Biochemistry
, vol.34
, pp. 6805-6814
-
-
Matthews, J.M.1
Fersht, A.R.2
-
47
-
-
0022555885
-
Determination and analysis of urea and guanidinium hydrochloride denaturation curves
-
C.N. Pace Determination and analysis of urea and guanidinium hydrochloride denaturation curves Methods Enzymol. 131 1986 266 280
-
(1986)
Methods Enzymol.
, vol.131
, pp. 266-280
-
-
Pace, C.N.1
-
48
-
-
0037225280
-
Evidence for sequential barriers and obligatory intermediates in apparent two-state protein folding
-
I.E. Sanchez, and T. Kiefhaber Evidence for sequential barriers and obligatory intermediates in apparent two-state protein folding J. Mol. Biol. 325 2003 367 376
-
(2003)
J. Mol. Biol.
, vol.325
, pp. 367-376
-
-
Sanchez, I.E.1
Kiefhaber, T.2
-
49
-
-
0037414650
-
Weak cooperativity in the core causes a switch in folding mechanism between two proteins of the cks family
-
M.A. Seeliger, S.E. Breward, and L.S. Itzhaki Weak cooperativity in the core causes a switch in folding mechanism between two proteins of the cks family J. Mol. Biol. 325 2003 189 199
-
(2003)
J. Mol. Biol.
, vol.325
, pp. 189-199
-
-
Seeliger, M.A.1
Breward, S.E.2
Itzhaki, L.S.3
-
50
-
-
0036293485
-
Conformational plasticity in folding of the split beta-alpha-beta protein S6: Evidence for burst-phase disruption of the native state
-
D.E. Otzen, and M. Oliveberg Conformational plasticity in folding of the split beta-alpha-beta protein S6: evidence for burst-phase disruption of the native state J. Mol. Biol. 317 2002 613 627
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 613-627
-
-
Otzen, D.E.1
Oliveberg, M.2
-
51
-
-
0035252685
-
Characterisation of the transition states for protein folding: Towards a new level of mechanistic detail in protein engineering analysis
-
M. Oliveberg Characterisation of the transition states for protein folding: towards a new level of mechanistic detail in protein engineering analysis Curr. Opin. Struct. Biol. 11 2001 94 100
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 94-100
-
-
Oliveberg, M.1
-
52
-
-
0000384736
-
Alternative explanations for "multistate" kinetics in protein folding: Transient aggregation and changing transition-state ensembles
-
M. Oliveberg Alternative explanations for "multistate" kinetics in protein folding: transient aggregation and changing transition-state ensembles Accts Chem. Res. 31 1998 765 772
-
(1998)
Accts Chem. Res.
, vol.31
, pp. 765-772
-
-
Oliveberg, M.1
-
53
-
-
0036298969
-
Folding of the yeast prion protein Ure2: Kinetic evidence for folding and unfolding intermediates
-
D. Galani, A.R. Fersht, and S. Perrett Folding of the yeast prion protein Ure2: kinetic evidence for folding and unfolding intermediates J. Mol. Biol. 315 2002 213 227
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 213-227
-
-
Galani, D.1
Fersht, A.R.2
Perrett, S.3
-
54
-
-
0033592876
-
From snapshot to movie: Phi analysis of protein folding transition states taken one step further
-
T. Ternstrom, U. Mayor, M. Akke, and M. Oliveberg From snapshot to movie: phi analysis of protein folding transition states taken one step further Proc. Natl Acad. Sci. USA 96 1999 14854 14859
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 14854-14859
-
-
Ternstrom, T.1
Mayor, U.2
Akke, M.3
Oliveberg, M.4
-
55
-
-
0033580679
-
Structural changes in the transition state of protein folding: Alternative interpretations of curved chevron plots
-
D.E. Otzen, O. Kristensen, M. Proctor, and M. Oliveberg Structural changes in the transition state of protein folding: alternative interpretations of curved chevron plots Biochemistry 38 1999 6499 6511
-
(1999)
Biochemistry
, vol.38
, pp. 6499-6511
-
-
Otzen, D.E.1
Kristensen, O.2
Proctor, M.3
Oliveberg, M.4
-
56
-
-
0032503027
-
The changing nature of the protein folding transition state: Implications for the shape of the free-energy profile for folding
-
M. Oliveberg, Y.J. Tan, M. Silow, and A.R. Fersht The changing nature of the protein folding transition state: implications for the shape of the free-energy profile for folding J. Mol. Biol. 277 1998 933 943
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 933-943
-
-
Oliveberg, M.1
Tan, Y.J.2
Silow, M.3
Fersht, A.R.4
-
57
-
-
0035895436
-
Apparent two-state tendamistat folding is a sequential process along a defined route
-
A. Bachmann, and T. Kiefhaber Apparent two-state tendamistat folding is a sequential process along a defined route J. Mol. Biol. 306 2001 375 386
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 375-386
-
-
Bachmann, A.1
Kiefhaber, T.2
-
58
-
-
0029863942
-
The spectrin repeat folds into a three-helix bundle in solution
-
J. Pascual, M. Pfuhl, G. Rivas, A. Pastore, and M. Saraste The spectrin repeat folds into a three-helix bundle in solution FEBS Letters 383 1996 201 207
-
(1996)
FEBS Letters
, vol.383
, pp. 201-207
-
-
Pascual, J.1
Pfuhl, M.2
Rivas, G.3
Pastore, A.4
Saraste, M.5
-
59
-
-
0345304461
-
Origin of unusual Φ-values in protein folding: Evidence against specific nucleation sites
-
I.E. Sanchez, and T. Kiefhaber Origin of unusual Φ-values in protein folding: evidence against specific nucleation sites J. Mol. Biol. 334 2003 1077 1085
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 1077-1085
-
-
Sanchez, I.E.1
Kiefhaber, T.2
-
60
-
-
2542599277
-
Φ-value analysis and the nature of protein-folding transition states
-
A.R. Fersht, and S. Sato Φ-value analysis and the nature of protein-folding transition states Proc. Natl Acad. Sci. USA 101 2004 7976 7981
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 7976-7981
-
-
Fersht, A.R.1
Sato, S.2
-
61
-
-
0031127043
-
Development of the multiple sequence approximation within the agadir model of alpha-helix formation. Comparison with Zimm-Bragg and Lifson-Roig formalisms
-
V. Munoz, and L. Serrano Development of the multiple sequence approximation within the agadir model of alpha-helix formation. Comparison with Zimm-Bragg and Lifson-Roig formalisms Biopolymers 41 1997 495 509
-
(1997)
Biopolymers
, vol.41
, pp. 495-509
-
-
Munoz, V.1
Serrano, L.2
-
62
-
-
0026511656
-
The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding
-
A.R. Fersht, A. Matouschek, and L. Serrano The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding J. Mol. Biol. 224 1992 771 782
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 771-782
-
-
Fersht, A.R.1
Matouschek, A.2
Serrano, L.3
-
63
-
-
0024358426
-
Mapping the transition-state and pathway of protein folding by protein engineering
-
A. Matouschek, J.T. Kellis, L. Serrano, and A.R. Fersht Mapping the transition-state and pathway of protein folding by protein engineering Nature 340 1989 122 126
-
(1989)
Nature
, vol.340
, pp. 122-126
-
-
Matouschek, A.1
Kellis, J.T.2
Serrano, L.3
Fersht, A.R.4
-
64
-
-
0028037217
-
Single versus parallel pathways of protein folding and fractional formation of structure in the transition state
-
A.R. Fersht, L.S. Itzhaki, N.F. ElMasry, and J.M. Matthews Single versus parallel pathways of protein folding and fractional formation of structure in the transition state Proc. Natl Acad. Sci. USA 91 1994 10426 10429
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 10426-10429
-
-
Fersht, A.R.1
Itzhaki, L.S.2
Elmasry, N.F.3
Matthews, J.M.4
-
65
-
-
1442348207
-
Discerning the structure and energy of multiple transition states in protein folding using Ψ-analysis
-
B.A. Krantz, R.S. Dothager, and T.R. Sosnick Discerning the structure and energy of multiple transition states in protein folding using Ψ-analysis J. Mol. Biol. 377 2004 463 475
-
(2004)
J. Mol. Biol.
, vol.377
, pp. 463-475
-
-
Krantz, B.A.1
Dothager, R.S.2
Sosnick, T.R.3
-
66
-
-
85012750408
-
Kinetic characterisation of complex reaction systems
-
C.H. Bamford C.F.H. Tipper Elsevier Amsterdam
-
Z.G. Szabo Kinetic characterisation of complex reaction systems C.H. Bamford C.F.H. Tipper Comprehensive Chemical Kinetics Vol. 2 1969 Elsevier Amsterdam 1 81
-
(1969)
Comprehensive Chemical Kinetics
, vol.2
, pp. 1-81
-
-
Szabo, Z.G.1
-
67
-
-
0026516420
-
Kinetic coupling between protein folding and prolyl isomerization.1. Theoretical models
-
T. Kiefhaber, H.H. Kohler, and F.X. Schmid Kinetic coupling between protein folding and prolyl isomerization.1. Theoretical models J. Mol. Biol. 224 1992 217 229
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 217-229
-
-
Kiefhaber, T.1
Kohler, H.H.2
Schmid, F.X.3
-
68
-
-
0031592935
-
Solution structure of the spectrin repeat: A left-handed antiparallel triple-helical coiled-coil
-
J. Pascual, M. Pfuhl, D. Walther, M. Saraste, and M. Nilges Solution structure of the spectrin repeat: a left-handed antiparallel triple-helical coiled-coil J. Mol. Biol. 273 1997 740 751
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 740-751
-
-
Pascual, J.1
Pfuhl, M.2
Walther, D.3
Saraste, M.4
Nilges, M.5
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