Laser temperature jump study of the helix⇆coil kinetics of an alanine peptide interpreted with a 'kinetic zipper' model

Biochemistry

Volumn 36, Issue 30, 1997, Pages 9200-9210

  Thompson, Peggy A ^a   Eaton, William A ^a   Hofrichter, James ^a  

^a NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

4 METHYLAMINOBENZOIC ACID; ALANINE; BENZOIC ACID DERIVATIVE; PEPTIDE; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ARTICLE; CONFORMATIONAL TRANSITION; FLUORESCENCE; LASER; MODEL; PRIORITY JOURNAL; TEMPERATURE DEPENDENCE;

ALANINE; AMINO ACID SEQUENCE; KINETICS; LASERS; MODELS, MOLECULAR; PEPTIDES; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; SPECTROMETRY, FLUORESCENCE; THERMODYNAMICS;

EID: 0030789351     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9704764     Document Type: Article

References (64)

1. Williams, S., Causgrove, T. P., Gilmanshin, R., Fang, K. S., Callender, R. H., Woodruff, W. H., and Dyer, R. B. (1996) Biochemistry 35, 691-697.
2. Schellman, J. A. (1958) J. Phys. Chem. 62, 1485-1494.
3. Zimm, B. H., and Bragg, J. K. (1959) J. Chem. Phys. 31, 526-535.
4. Qian, H., and Schellman, J. A. (1992) J. Phys. Chem. 96, 3987-3994.
5. Scholtz, J. M., Marqusee, S., Baldwin, R. L., York, E. J., Stewart, J. M., Santoro, M., and Bolen, D. W. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 2854-2858.
6. Chakrabartty, A., Schellman, J. A., and Baldwin, R. L. (1991) Nature 351, 586-588.
7. Scholtz, J. M., and Baldwin, R. L. (1992) Annu. Rev. Biophys. Biomol. Struct. 21, 95-118.
8. Cantor, C. R., and Schimmel, P. R. (1980) in Biophysical Chemistry, Part III, W. H. Freeman, San Francisco, CA.
9. Schwarz, G. (1965) J. Mol. Biol. 11, 64-77.
10. Soman, K. V., Karimi, A., and Case, D. A. (1991) Biopolymers 31, 1351-1361.
11. Daggett, V., Kollman, P. A., and Kuntz, I. D. (1991) Biopolymers 31, 1115-1134.
12. Daggett, V., and Levitt, M. (1992) J. Mol. Biol. 223, 1121-1138.
13. Sung, S.-S., and Wu, X.-W. (1996) Proteins: Struct., Funct., Genet. 25, 202-214.
14. Schwarz, G., and Seelig, J. (1968) Biopolymers 6, 1263-1277.
15. Burke, J. J., Hammes, G. G., and Lewis, T. B. (1965) J. Chem. Phys. 42, 3520-3525.
16. Parker, R., Slutsky, L., and Applegate, K. (1968) J. Phys. Chem. 72, 3177-3186.
17. Hammes, G. G., and Roberts, P. B. (1969) J. Am. Chem. Soc. 91, 1812-1817.
18. Barksdale, A., and Stuehr, J. (1972) J. Am. Chem. Soc. 94, 3334-3338.
19. Wada, A., Tanaka, T., and Kihara, H. (1972) Biopolymers 11, 587-605.
20. Sano, T., Yasunaga, T., Tsuji, Y., and Ushio, H. (1975) Chem. Instrum. 6, 285-296.
21. Cummins, A. L., and Eyring, E. M. (1975) Biopolymers 14, 2107-2114.
22. Tsuji, Y., Yasunaga, T., Sano, T., and Ushio, H. (1976) J. Am. Chem. Soc. 98, 813-818.
23. Gruenewald, B., Nicola, C. U., Lustig, A., Schwarz, G., and Klump, H. (1979) Biophys. Chem. 9, 137-147.
24. Poland, D., and Scheraga, H. A. (1966) J. Chem. Phys. 45, 2071-2090.
25. McQuarrie, D. A., McTague, J. P., and Reiss, H. (1965) Biopolymers 3, 657-663.
26. Gō, N. (1967) J. Phys. Soc. Jpn. 22, 416-427.
27. Munoz, V., and Serrano, L. (1995) Curr. Opin. Biotechnol. 6, 382-386.
28. Thompson, P. A., Eaton, W. A., and Hofrichter, J. (1996) Protein Sci. 5, 67.
29. Thompson, P. A. (1997) in Techniques in Protein Chemistry, VIII (Marshak, D. R., Ed.) Academic Press, San Diego, CA.
30. Gilmanshin, R., Williams, S., Callender, R. H., Woodruff, W. H., and Dyer, R. B. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 3709-3713.
31. Ballew, R. M., Sabelko, J., and Gruebele, M. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 5759-5764.
32. Phillips, C. M., Mizutani, Y., and Hochstrasser, R. M. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 7292-7296.
33. Brooks, C. L., and Case, D. A. (1993) Chem. Rev. 93, 2487-2502.
34. Doig, A. J., Chakrabartty, A., Klinger, T. M., and Baldwin, R. L. (1994) Biochemistry 33, 3396-3403.
35. Padmanaban, S., and Baldwin, R. L. (1994) J. Mol. Biol. 237, 500-512.
36. Staerk, H., and Czerlinski, G. (1965) Nature 205, 63-64.
37. Hoffmann, H., Yeager, E., and Stuehr, J. (1968) Rev. Sci. Instrum. 39, 649-653.
38. Beitz, J. V., Flynn, G. W., Turner, D. H., and Sutin, N. (1970) J. Am. Chem. Soc. 92, 4130-4132.
39. Turner, D. H., Flynn, G. W., Sutin, N., and Beitz, J. V. (1972) J. Am. Chem. Soc. 94, 1554-1559.
40. Williams, A. P., Longfellow, C. E., Freier, S. M., Kierzek, R., and Turner, D. H. (1989) Biochemistry 28, 4283-4291.
41. Young, W. S., and Brooks, C. L. (1996) J. Mol. Biol. 259, 560-572.
42. Brooks, C. L. (1996) J. Phys. Chem. 100, 2546-2549.
43. Lockhart, D. J., and Kim, P. S. (1992) Science 257, 947-951.
44. Goodall, D. M., and Greenhow, R. C. (1971) Chem. Phys. Lett. 9, 583-586.
45. Anfinrud, P. A., Han, C., and Hochstrasser, R. M. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 8387-8391.
46. Cowgill, R. W. (1968) Biochim. Biophys. Acta 168, 431-438.
47. Shoemaker, K. R., Kim, P. S., York, E. J., Stewart, J. M., and Baldwin, R. L. (1987) Nature 326, 563-567.
48. Scholtz, J. M., Qian, H., York, E. J., Stewart, J. M., and Baldwin, R. L. (1991) Biopolymers 31, 1463-1470.
49. Chen, T.-H., Yang, J. T., and Chau, K. H. (1974) Biochemistry 13, 3350-3359.
50. Madison, V., and Schellman, J. (1972) Biopolymers 11, 1041-1076.
51. Feitelson, J. (1964) J. Phys Chem. 68, 931-397.
52. Cowgill, R. W. (1967) Biochim. Biophys. Acta 133, 6-18.
53. Cowgill, R. W. (1968) Biochim. Biophys. Acta 168, 417-430.
54. Lifson, S., and Roig, A. (1961) J. Chem. Phys. 34, 1963-1974.
55. Poland, D., and Scheraga, H. A. (1970) in Theory of Helix-Coil Transitions in Biopolymers, Academic Press, New York.
56. Bradley, E. K., Thomason, J. F., Cohen, F. E., Kosen, P. A., and Kuntz, I. D. (1990) J. Mol. Biol. 215, 607-622.
57. Muck, S. M., Todd, A. P., and Millhauser, G. L. (1991) Biochemistry 30, 9498-9503.
58. Liff, M. I., Lyu, P. C., and Kallenbach, N. R. (1991) J. Am. Chem. Soc. 113, 1014-1019.
59. Rohl, C. A., and Baldwin, R. L. (1994) Biochemistry 33, 7760-7767.
60. Ansari, A., Jones, C. M., Henry, E. R., Hofrichter, J., and Eaton, W. A. (1992) Science 256, 1796-1798.
61. Klimov, D. K., and Thirumalai, D. Phys. Rev. Lett. (in press).
62. Schellman, J. A. (1955) Comp. Rend. Trav. Lab. Carlsberg. Ser. Chim. 29, 223-229.
63. Wada, A. (1971) Chem. Phys. Lett. 8, 211-213.
64. Zwanzig, R. W. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 148-150.