-
1
-
-
0037022327
-
Conformational landscape of cytochrome c folding studied by microsecond-resolved small-angle x-ray scattering
-
Akiyama S, Takahashi S, Kimura T, Ishimori K, Morishima I, et al. 2002. Conformational landscape of cytochrome c folding studied by microsecond-resolved small-angle x-ray scattering. Proc. Natl. Acad. Sci. USA 99:1329-34
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 1329-1334
-
-
Akiyama, S.1
Takahashi, S.2
Kimura, T.3
Ishimori, K.4
Morishima, I.5
-
2
-
-
4444324627
-
The nature of the free energy barriers to two-state folding
-
Akmal A, Muñoz V. 2004. The nature of the free energy barriers to two-state folding. Proteins Struct. Funct. Bioinf. 57:142-52
-
(2004)
Proteins Struct. Funct. Bioinf
, vol.57
, pp. 142-152
-
-
Akmal, A.1
Muñoz, V.2
-
3
-
-
0033613255
-
Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures
-
Alm E, Baker D. 1999. Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures. Proc. Natl. Acad. Sci. USA 96:11305-10
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 11305-11310
-
-
Alm, E.1
Baker, D.2
-
4
-
-
0033578370
-
The speed limit for protein folding measured by triplet-triplet energy transfer
-
Bieri O, Wirz J, Hellrung B, Schutkowski M, Drewello M, Kiefhaber T. 1999. The speed limit for protein folding measured by triplet-triplet energy transfer. Proc. Natl. Acad. Sci. USA 96:9597-601
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 9597-9601
-
-
Bieri, O.1
Wirz, J.2
Hellrung, B.3
Schutkowski, M.4
Drewello, M.5
Kiefhaber, T.6
-
5
-
-
0029151245
-
First-principles calculation of the folding free-energy of a 3-helix bundle protein
-
Boczko EM, Brooks CL. 1995. First-principles calculation of the folding free-energy of a 3-helix bundle protein. Science 269:393-96
-
(1995)
Science
, vol.269
, pp. 393-396
-
-
Boczko, E.M.1
Brooks, C.L.2
-
6
-
-
0028947257
-
Funnels, pathways, and the energy landscape of protein-folding: A synthesis
-
Bryngelson JD, Onuchic JN, Socci ND, Wolynes PG. 1995. Funnels, pathways, and the energy landscape of protein-folding: a synthesis. Proteins Struct. Funct. Genet. 21:167-95
-
(1995)
Proteins Struct. Funct. Genet
, vol.21
, pp. 167-195
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
7
-
-
0041735179
-
Kinetics of intramolecular contact formation in a denatured protein
-
Buscaglia M, Schuler B, Lapidus LJ, Eaton WA, Hofrichter J. 2003. Kinetics of intramolecular contact formation in a denatured protein. J. Mol. Biol. 332:9-12
-
(2003)
J. Mol. Biol
, vol.332
, pp. 9-12
-
-
Buscaglia, M.1
Schuler, B.2
Lapidus, L.J.3
Eaton, W.A.4
Hofrichter, J.5
-
8
-
-
0027318781
-
Kinetics and thermodynamics of folding in model proteins
-
Camacho CJ, Thirumalai D. 1993. Kinetics and thermodynamics of folding in model proteins. Proc. Natl. Acad. Sci. USA 90:6369-72
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 6369-6372
-
-
Camacho, C.J.1
Thirumalai, D.2
-
9
-
-
8644261670
-
Kinetics of alpha-helix formation as diffusion on a one-dimensional free energy surface
-
Doshi U, Muñoz V. 2004. Kinetics of alpha-helix formation as diffusion on a one-dimensional free energy surface. Chem. Phys. 307:129-36
-
(2004)
Chem. Phys
, vol.307
, pp. 129-136
-
-
Doshi, U.1
Muñoz, V.2
-
10
-
-
3042636290
-
The principles of alpha-helix formation: Explaining complex kinetics with nucleation-elongation theory
-
Doshi UR, Muñoz V. 2004. The principles of alpha-helix formation: explaining complex kinetics with nucleation-elongation theory. J. Phys. Chem. B 108:8497-506
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 8497-8506
-
-
Doshi, U.R.1
Muñoz, V.2
-
11
-
-
0033060613
-
Searching for "downhill scenarios" in protein folding
-
Eaton WA. 1999. Searching for "downhill scenarios" in protein folding. Proc. Natl. Acad. Sci. USA 96:5897-99
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 5897-5899
-
-
Eaton, W.A.1
-
12
-
-
0030623529
-
Rate of protein folding near the point of thermodynamic equilibrium between the coil and the most stable chain fold
-
Finkelstein AV, Badretdinov AY. 1999. Rate of protein folding near the point of thermodynamic equilibrium between the coil and the most stable chain fold. Folding Des. 2:115-21
-
(1999)
Folding Des
, vol.2
, pp. 115-121
-
-
Finkelstein, A.V.1
Badretdinov, A.Y.2
-
13
-
-
0345133287
-
Folding a protein in a computer: An atomic description of the folding/unfolding of protein A
-
Garcia AE, Onuchic JN. 2003. Folding a protein in a computer: an atomic description of the folding/unfolding of protein A. Proc. Natl. Acad. Sci. USA 100:13898-903
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 13898-13903
-
-
Garcia, A.E.1
Onuchic, J.N.2
-
14
-
-
0037073934
-
Experimental identification of downhill protein folding
-
Garcia-Mira MM, Sadqi M, Fischer N, Sanchez-Ruiz JM, Muñoz V. 2002. Experimental identification of downhill protein folding. Science 298:2191-95
-
(2002)
Science
, vol.298
, pp. 2191-2195
-
-
Garcia-Mira, M.M.1
Sadqi, M.2
Fischer, N.3
Sanchez-Ruiz, J.M.4
Muñoz, V.5
-
15
-
-
0037397987
-
Peptide folding simulations
-
Gnanakaran S, Nymeyer H, Portman J, Sanbonmatsu KY, Garcia AE. 2003. Peptide folding simulations. Curr. Opin. Struct. Biol. 13:168-74
-
(2003)
Curr. Opin. Struct. Biol
, vol.13
, pp. 168-174
-
-
Gnanakaran, S.1
Nymeyer, H.2
Portman, J.3
Sanbonmatsu, K.Y.4
Garcia, A.E.5
-
16
-
-
0037566231
-
Single-macromolecule fluorescence resonance energy transfer and free-energy profiles
-
Gopich IV, Szabo A. 2003. Single-macromolecule fluorescence resonance energy transfer and free-energy profiles. J. Phys. Chem. B 107:5058-63
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 5058-5063
-
-
Gopich, I.V.1
Szabo, A.2
-
18
-
-
0034714154
-
Two-state expansion and collapse of a polypeptide
-
Hagen SJ, Eaton WA. 2000. Two-state expansion and collapse of a polypeptide. J. Mol. Biol. 301:1019-27
-
(2000)
J. Mol. Biol
, vol.301
, pp. 1019-1027
-
-
Hagen, S.J.1
Eaton, W.A.2
-
19
-
-
24144469761
-
Diffusional limits to the speed of protein folding: Fact or friction?
-
Hagen SJ, Qiu LL, Pabit SA. 2005. Diffusional limits to the speed of protein folding: fact or friction? J. Phys. Condens. Matter 17:S1503-14
-
(2005)
J. Phys. Condens. Matter
, vol.17
-
-
Hagen, S.J.1
Qiu, L.L.2
Pabit, S.A.3
-
20
-
-
8644232696
-
Combinatorial modeling of protein folding kinetics: Free energy profiles and rates
-
Henry ER, Eaton WA. 2004. Combinatorial modeling of protein folding kinetics: free energy profiles and rates. Chem. Phys. 307:163-85
-
(2004)
Chem. Phys
, vol.307
, pp. 163-185
-
-
Henry, E.R.1
Eaton, W.A.2
-
21
-
-
0035814412
-
Time-resolved infrared study of the helix-coil transition using C-13-labeled helical peptides
-
Huang CY, Getahun Z, Wang T, DeGrado WF, Gai F. 2001. Time-resolved infrared study of the helix-coil transition using C-13-labeled helical peptides. J. Am. Chem. Soc. 123:12111-12
-
(2001)
J. Am. Chem. Soc
, vol.123
, pp. 12111-12112
-
-
Huang, C.Y.1
Getahun, Z.2
Wang, T.3
DeGrado, W.F.4
Gai, F.5
-
22
-
-
0037022567
-
Helix formation via conformation diffusion search
-
Huang CY, Getahun Z, Zhu YJ, Klemke JW, DeGrado WF, Gai F. 2002. Helix formation via conformation diffusion search. Proc. Natl. Acad. Sci. USA 99:2788-93
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 2788-2793
-
-
Huang, C.Y.1
Getahun, Z.2
Zhu, Y.J.3
Klemke, J.W.4
DeGrado, W.F.5
Gai, F.6
-
23
-
-
0035955148
-
Temperature-dependent helix-coil transition of an alanine based peptide
-
Huang CY, KJemke JW, Getahun Z, DeGrado WF, Gai F. 2001. Temperature-dependent helix-coil transition of an alanine based peptide. J. Am. Chem. Soc. 123:9235-38
-
(2001)
J. Am. Chem. Soc
, vol.123
, pp. 9235-9238
-
-
Huang, C.Y.1
KJemke, J.W.2
Getahun, Z.3
DeGrado, W.F.4
Gai, F.5
-
24
-
-
33846073474
-
-
23a. Huang F, Sato S, Sharpe TD, Ying L, Fersht AR. 2007. Distinguishing between cooperative and unimodal downhill protein folding. Proc. Natl. Acad. Sci. USA 104:123-27
-
23a. Huang F, Sato S, Sharpe TD, Ying L, Fersht AR. 2007. Distinguishing between cooperative and unimodal downhill protein folding. Proc. Natl. Acad. Sci. USA 104:123-27
-
-
-
-
25
-
-
0035839050
-
The folding mechanism of a beta-sheet: The WW domain
-
Jager M, Nguyen H, Crane JC, Kelly JW, Gruebele M. 2001. The folding mechanism of a beta-sheet: the WW domain. J. Mol. Biol. 311:373-93
-
(2001)
J. Mol. Biol
, vol.311
, pp. 373-393
-
-
Jager, M.1
Nguyen, H.2
Crane, J.C.3
Kelly, J.W.4
Gruebele, M.5
-
26
-
-
0034284060
-
Polymer principles of protein calorimetric two-state coopera-tivity
-
Kaya H, Chan HS. 2000. Polymer principles of protein calorimetric two-state coopera-tivity. Proteins Struct. Funct. Genet, 40:637-61
-
(2000)
Proteins Struct. Funct. Genet
, vol.40
, pp. 637-661
-
-
Kaya, H.1
Chan, H.S.2
-
27
-
-
8644243986
-
Exploring the effects of hydrogen bonding and hydrophobic interactions on the foldability and cooperativity of helical proteins using a simplified atomic model
-
Knott M, Chan HS. 2004. Exploring the effects of hydrogen bonding and hydrophobic interactions on the foldability and cooperativity of helical proteins using a simplified atomic model. Chem. Phys. 307:187-99
-
(2004)
Chem. Phys
, vol.307
, pp. 187-199
-
-
Knott, M.1
Chan, H.S.2
-
28
-
-
31544472338
-
Effect of finite size on cooperativity and rates of protein folding
-
Kouza M, Li MS, O'Brien EP, Hu CK, Thirumalai D. 2006. Effect of finite size on cooperativity and rates of protein folding. J. Phys. Chem. A 110:671-76
-
(2006)
J. Phys. Chem. A
, vol.110
, pp. 671-676
-
-
Kouza, M.1
Li, M.S.2
O'Brien, E.P.3
Hu, C.K.4
Thirumalai, D.5
-
29
-
-
0043237588
-
Dynamics of unfolded polypeptide chains as model for the earliest steps in protein folding
-
Krieger F, Fierz B, Bieri O, Drewello M, Kiefhaber T. 2003. Dynamics of unfolded polypeptide chains as model for the earliest steps in protein folding. J. Mol. Biol. 332:265-74
-
(2003)
J. Mol. Biol
, vol.332
, pp. 265-274
-
-
Krieger, F.1
Fierz, B.2
Bieri, O.3
Drewello, M.4
Kiefhaber, T.5
-
30
-
-
14944346760
-
Effect of proline and glycine residues on dynamics and barriers of loop formation in polypeptide chains
-
Krieger F, Moglich A, Kiefhaber T. 2005. Effect of proline and glycine residues on dynamics and barriers of loop formation in polypeptide chains. J. Am. Chem. Soc. 127:3346-52
-
(2005)
J. Am. Chem. Soc
, vol.127
, pp. 3346-3352
-
-
Krieger, F.1
Moglich, A.2
Kiefhaber, T.3
-
31
-
-
33646759974
-
Sub-microsecond protein folding
-
Kubelka J, Chiu TK, Davies DR, Eaton WA, Hofrichter J. 2006. Sub-microsecond protein folding. J. Mol. Biol. 359:546-53
-
(2006)
J. Mol. Biol
, vol.359
, pp. 546-553
-
-
Kubelka, J.1
Chiu, T.K.2
Davies, D.R.3
Eaton, W.A.4
Hofrichter, J.5
-
32
-
-
0038054301
-
Experimental tests of villin subdomain folding simulations
-
Kubelka J, Eaton WA, Hofrichter J. 2003. Experimental tests of villin subdomain folding simulations. J. Mol. Biol. 329:625-30
-
(2003)
J. Mol. Biol
, vol.329
, pp. 625-630
-
-
Kubelka, J.1
Eaton, W.A.2
Hofrichter, J.3
-
34
-
-
0034691198
-
Measuring the rate of intramolecular contact formation in polypeptides
-
Lapidus LJ, Eaton WA, Hofrichter J. 2000. Measuring the rate of intramolecular contact formation in polypeptides. Proc. Natl. Acad. Sci. USA 97:7220-25
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 7220-7225
-
-
Lapidus, L.J.1
Eaton, W.A.2
Hofrichter, J.3
-
35
-
-
85037227289
-
Dynamics of intramolecular contact formation in polypeptides: Distance dependence of quenching rates in a room-temperature glass
-
Lapidus LJ, Eaton WA, Hofrichter J. 2001. Dynamics of intramolecular contact formation in polypeptides: distance dependence of quenching rates in a room-temperature glass. Phys. Rev. Lett. 87:258101
-
(2001)
Phys. Rev. Lett
, vol.87
, pp. 258101
-
-
Lapidus, L.J.1
Eaton, W.A.2
Hofrichter, J.3
-
36
-
-
0036304892
-
Measuring dynamic flexibility of the coil state of a helix-forming peptide
-
Lapidus LJ, Eaton WA, Hofrichter J. 2002. Measuring dynamic flexibility of the coil state of a helix-forming peptide. J. Mol. Biol. 319:19-25
-
(2002)
J. Mol. Biol
, vol.319
, pp. 19-25
-
-
Lapidus, L.J.1
Eaton, W.A.2
Hofrichter, J.3
-
37
-
-
0037038514
-
Effects of chain stiffness on the dynamics of loop formation in polypeptides. Appendix: Testing a 1-dimensional diffusion model for peptide dynamics
-
Lapidus LJ, Steinbach PJ, Eaton WA, Szabo A, Hofrichter J. 2002. Effects of chain stiffness on the dynamics of loop formation in polypeptides. Appendix: testing a 1-dimensional diffusion model for peptide dynamics. J. Phys. Chem. B 106:11628-40
-
(2002)
J. Phys. Chem. B
, vol.106
, pp. 11628-11640
-
-
Lapidus, L.J.1
Steinbach, P.J.2
Eaton, W.A.3
Szabo, A.4
Hofrichter, J.5
-
38
-
-
0037456298
-
The complete folding pathway of a protein from nanoseconds to microseconds
-
Mayor U, Guydosh NR, Johnson CM, Grossmann JG, Sato S, et al. 2003. The complete folding pathway of a protein from nanoseconds to microseconds. Nature 421:863-67
-
(2003)
Nature
, vol.421
, pp. 863-867
-
-
Mayor, U.1
Guydosh, N.R.2
Johnson, C.M.3
Grossmann, J.G.4
Sato, S.5
-
39
-
-
0034610360
-
Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation
-
Mayor U, Johnson CM, Daggett V, Fersht AR. 2000. Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation. Proc. Natl. Acad. Sci. USA 97:13518-22
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 13518-13522
-
-
Mayor, U.1
Johnson, C.M.2
Daggett, V.3
Fersht, A.R.4
-
40
-
-
33646937406
-
Single-molecule fluorescence studies of protein folding and conformational dynamics
-
Michalet X, Weiss S, Jager M. 2006. Single-molecule fluorescence studies of protein folding and conformational dynamics. Chem. Rev. 106:1785-813
-
(2006)
Chem. Rev
, vol.106
, pp. 1785-1813
-
-
Michalet, X.1
Weiss, S.2
Jager, M.3
-
41
-
-
0037111966
-
Thermodynamics and kinetics of downhill protein folding investigated with a simple statistical mechanical model
-
Muñoz V. 2002. Thermodynamics and kinetics of downhill protein folding investigated with a simple statistical mechanical model. Int. J. Quant. Chem. 90:1522-28
-
(2002)
Int. J. Quant. Chem
, vol.90
, pp. 1522-1528
-
-
Muñoz, V.1
-
42
-
-
0033613165
-
A simple model for calculating the kinetics of protein folding from three-dimensional structures
-
Muñoz V, Eaton WA. 1999. A simple model for calculating the kinetics of protein folding from three-dimensional structures. Proc. Natl. Acad. Sci. USA 96:11311-16
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 11311-11316
-
-
Muñoz, V.1
Eaton, W.A.2
-
43
-
-
33745027667
-
Folding and aggregation kinetics of a beta-hairpin
-
Muñoz V, Ghirlando R, Blanco FJ, Jas GS, Hofrichter J, Eaton WA. 2006. Folding and aggregation kinetics of a beta-hairpin. Biochemistry 45:7023-35
-
(2006)
Biochemistry
, vol.45
, pp. 7023-7035
-
-
Muñoz, V.1
Ghirlando, R.2
Blanco, F.J.3
Jas, G.S.4
Hofrichter, J.5
Eaton, W.A.6
-
44
-
-
11144223201
-
Exploring protein-folding ensembles: A variable-barrier model for the analysis of equilibrium unfolding experiments
-
Muñoz V, Sanchez-Ruiz JM. 2004. Exploring protein-folding ensembles: a variable-barrier model for the analysis of equilibrium unfolding experiments. Proc. Natl. Acad. Sci. USA 101:17646-51
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 17646-17651
-
-
Muñoz, V.1
Sanchez-Ruiz, J.M.2
-
46
-
-
33746037587
-
Dynamics, energetics, and structure in protein folding
-
Naganathan AN, Doshi U, Fung A, Sadqi M, Muñoz V. 2006. Dynamics, energetics, and structure in protein folding. Biochemistry 45:8466-75
-
(2006)
Biochemistry
, vol.45
, pp. 8466-8475
-
-
Naganathan, A.N.1
Doshi, U.2
Fung, A.3
Sadqi, M.4
Muñoz, V.5
-
47
-
-
12944309313
-
Scaling of folding times with protein size
-
Naganathan AN, Muñoz V. 2005. Scaling of folding times with protein size. J. Am. Chem. Soc. 127:480-81
-
(2005)
J. Am. Chem. Soc
, vol.127
, pp. 480-481
-
-
Naganathan, A.N.1
Muñoz, V.2
-
49
-
-
0001071357
-
Tuning the free-energy landscape of a WW domain by temperature, mutation, and truncation
-
Nguyen H, Jager M, Moretto A, Gruebele M, Kelly JW. 2003. Tuning the free-energy landscape of a WW domain by temperature, mutation, and truncation. Proc. Natl. Acad. Sci. USA 100:3948-53
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 3948-3953
-
-
Nguyen, H.1
Jager, M.2
Moretto, A.3
Gruebele, M.4
Kelly, J.W.5
-
50
-
-
0028981210
-
Negative activation enthalpies in the kinetics of protein-folding
-
Oliveberg M, Tan YJ, Fersht AR. 1995. Negative activation enthalpies in the kinetics of protein-folding. Proc. Natl. Acad. Sci. USA 92:8926-29
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 8926-8929
-
-
Oliveberg, M.1
Tan, Y.J.2
Fersht, A.R.3
-
53
-
-
4744357562
-
Internal friction controls the speed of protein folding from a compact configuration
-
Pabit SA, Roder H, Hagen SJ. 2004. Internal friction controls the speed of protein folding from a compact configuration. Biochemistry 43:12532-38
-
(2004)
Biochemistry
, vol.43
, pp. 12532-12538
-
-
Pabit, S.A.1
Roder, H.2
Hagen, S.J.3
-
54
-
-
0030778008
-
Probing molecular motion by NMR
-
Palmer AG. 1997. Probing molecular motion by NMR. Curr. Opin. Struct. Biol. 7:732-37
-
(1997)
Curr. Opin. Struct. Biol
, vol.7
, pp. 732-737
-
-
Palmer, A.G.1
-
55
-
-
0037235952
-
Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing
-
Pande VS, Baker I, Chapman J, Elmer SP, Khaliq S, et al. 2003. Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing. Biopolymcrs 68:91-109
-
(2003)
Biopolymcrs
, vol.68
, pp. 91-109
-
-
Pande, V.S.1
Baker, I.2
Chapman, J.3
Elmer, S.P.4
Khaliq, S.5
-
56
-
-
0036023918
-
Understanding protein folding with energy landscape theory part I: Basic concepts
-
Plotkin SS, Onuchic JN. 2002. Understanding protein folding with energy landscape theory part I: basic concepts. Q. Rev. Biophys. 35:111-67
-
(2002)
Q. Rev. Biophys
, vol.35
, pp. 111-167
-
-
Plotkin, S.S.1
Onuchic, J.N.2
-
57
-
-
0036706015
-
Understanding protein folding with energy landscape theory part II: Quantitative aspects
-
Plotkin SS, Onuchic JN. 2002. Understanding protein folding with energy landscape theory part II: quantitative aspects. Q. Rev. Biophys. 35:205-86
-
(2002)
Q. Rev. Biophys
, vol.35
, pp. 205-286
-
-
Plotkin, S.S.1
Onuchic, J.N.2
-
58
-
-
0033621117
-
Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle x-ray scattering
-
Pollack L, Tate MW, Darnton NC, Knight JB, Gruner SM, et al. 1999. Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle x-ray scattering. Proc. Natl. Acad. Sci. USA 96:10115-17
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 10115-10117
-
-
Pollack, L.1
Tate, M.W.2
Darnton, N.C.3
Knight, J.B.4
Gruner, S.M.5
-
59
-
-
0037667601
-
Fast chain contraction during protein folding: "foldability" and collapse dynamics
-
Qiu LL, Zachariah C, Hagen SJ. 2003. Fast chain contraction during protein folding: "foldability" and collapse dynamics. Phys. Rev. Lett. 90:168103
-
(2003)
Phys. Rev. Lett
, vol.90
, pp. 168103
-
-
Qiu, L.L.1
Zachariah, C.2
Hagen, S.J.3
-
60
-
-
27144532135
-
Solution structure of a protein denatured state and folding intermediate
-
Religa TL, Markson JS, Mayor U, Freund SMV, Fersht AR. 2005. Solution structure of a protein denatured state and folding intermediate. Nature 437:1053-56
-
(2005)
Nature
, vol.437
, pp. 1053-1056
-
-
Religa, T.L.1
Markson, J.S.2
Mayor, U.3
Freund, S.M.V.4
Fersht, A.R.5
-
61
-
-
34347263839
-
Single molecule protein folding
-
Rhoades E, Cohen M, Gussakovsky E, Schuler B, Haran G. 2004. Single molecule protein folding. Biophys. J. 86:616A
-
(2004)
Biophys. J
, vol.86
-
-
Rhoades, E.1
Cohen, M.2
Gussakovsky, E.3
Schuler, B.4
Haran, G.5
-
62
-
-
8844247109
-
Two-state folding observed in individual protein molecules
-
Rhoades E, Cohen M, Schuler B, Haran G. 2004. Two-state folding observed in individual protein molecules. J. Am. Chem. Soc. 126:14686-87
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 14686-14687
-
-
Rhoades, E.1
Cohen, M.2
Schuler, B.3
Haran, G.4
-
63
-
-
0000159569
-
Protein structure and the energetics of protein stability
-
Robertson AD, Murphy KP. 1997. Protein structure and the energetics of protein stability. Chem. Rev. 97:1251-67
-
(1997)
Chem. Rev
, vol.97
, pp. 1251-1267
-
-
Robertson, A.D.1
Murphy, K.P.2
-
64
-
-
33746102627
-
Atom-by-atom analysis of global downhill protein folding
-
Sadqi M, Fushman D, Muñoz V. 2006. Atom-by-atom analysis of global downhill protein folding. Nature 442:317-21
-
(2006)
Nature
, vol.442
, pp. 317-321
-
-
Sadqi, M.1
Fushman, D.2
Muñoz, V.3
-
66
-
-
22444436718
-
Single-molecule fluorescence spectroscopy of protein folding
-
Schuler B. 2005. Single-molecule fluorescence spectroscopy of protein folding. ChemPhysChem 6:1206-20
-
(2005)
ChemPhysChem
, vol.6
, pp. 1206-1220
-
-
Schuler, B.1
-
67
-
-
0037126290
-
Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy
-
Schuler B, Lipman EA, Eaton WA. 2002. Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy. Nature 419:743-47
-
(2002)
Nature
, vol.419
, pp. 743-747
-
-
Schuler, B.1
Lipman, E.A.2
Eaton, W.A.3
-
68
-
-
14544283620
-
Polyproline and the "spectroscopic ruler" revisited with single-molecule fluorescence
-
Schuler B, Lipman EA, Steinbach PJ, Kumke M, Eaton WA. 2005. Polyproline and the "spectroscopic ruler" revisited with single-molecule fluorescence. Proc. Natl. Acad. Sci. USA 102:2754-59
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 2754-2759
-
-
Schuler, B.1
Lipman, E.A.2
Steinbach, P.J.3
Kumke, M.4
Eaton, W.A.5
-
69
-
-
33746823043
-
Coil-globule transition in the denatured state of a small protein
-
Sherman E, Haran G. 2006. Coil-globule transition in the denatured state of a small protein. Proc. Natl. Acad. Sci. USA 103:11539-43
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 11539-11543
-
-
Sherman, E.1
Haran, G.2
-
71
-
-
0000710672
-
Diffusive dynamics of the reaction coordinate for protein folding funnels
-
Socci ND, Onuchic JN, Wolynes PG. 1996. Diffusive dynamics of the reaction coordinate for protein folding funnels. J. Chem. Phys. 104:5860-68
-
(1996)
J. Chem. Phys
, vol.104
, pp. 5860-5868
-
-
Socci, N.D.1
Onuchic, J.N.2
Wolynes, P.G.3
-
72
-
-
2942567954
-
Describing protein folding kinetics by molecular dynamics simulations. 1. Theory
-
Swope WC, Pitera JW, Suits F. 2004. Describing protein folding kinetics by molecular dynamics simulations. 1. Theory. J. Phys. Chem. B 108:6571-94
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 6571-6594
-
-
Swope, W.C.1
Pitera, J.W.2
Suits, F.3
-
73
-
-
0000050196
-
From minimal models to real proteins: Time scales for protein-folding kinetics
-
Thirumalai D. 1995. From minimal models to real proteins: time scales for protein-folding kinetics. J. Phys. I 5:1457-67
-
(1995)
J. Phys. I
, vol.5
, pp. 1457-1467
-
-
Thirumalai, D.1
-
74
-
-
0030789351
-
Laser temperature jump study of the helix reversible arrow coil kinetics of an alanine peptide interpreted with a 'kinetic zipper' model
-
Thompson PA, Eaton WA, Hofrichter J. 1997. Laser temperature jump study of the helix reversible arrow coil kinetics of an alanine peptide interpreted with a 'kinetic zipper' model. Biochemistry 36:9200-10
-
(1997)
Biochemistry
, vol.36
, pp. 9200-9210
-
-
Thompson, P.A.1
Eaton, W.A.2
Hofrichter, J.3
-
75
-
-
0000137407
-
The helix-coil kinetics of a heteropeptide
-
Thompson PA, Muñoz V, Jas GS, Henry ER, Eaton WA, Hofrichter J. 2000. The helix-coil kinetics of a heteropeptide. J. Phys. Chem. B 104:378-89
-
(2000)
J. Phys. Chem. B
, vol.104
, pp. 378-389
-
-
Thompson, P.A.1
Muñoz, V.2
Jas, G.S.3
Henry, E.R.4
Eaton, W.A.5
Hofrichter, J.6
-
76
-
-
1642414760
-
Probing the folding and unfolding dynamics of secondary and tertiary structures in a three-helix bundle protein
-
Vu DM, Myers JK, Oas TG, Dyer RB. 2004. Probing the folding and unfolding dynamics of secondary and tertiary structures in a three-helix bundle protein. Biochemistry 43:3582-89
-
(2004)
Biochemistry
, vol.43
, pp. 3582-3589
-
-
Vu, D.M.1
Myers, J.K.2
Oas, T.G.3
Dyer, R.B.4
-
77
-
-
2542548801
-
Experimental resolution of early steps in protein folding: Testing molecular dynamics simulations
-
Vu DM, Peterson ES, Dyer RB. 2004. Experimental resolution of early steps in protein folding: testing molecular dynamics simulations. J. Am. Chem. Soc. 126:6546-47
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 6546-6547
-
-
Vu, D.M.1
Peterson, E.S.2
Dyer, R.B.3
-
78
-
-
1842637575
-
Folding of a three-helix bundle at the folding speed limit
-
Wang T, Zhu YJ, Gai F. 2004. Folding of a three-helix bundle at the folding speed limit. J. Phys. Chem. B 108:3694-97
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 3694-3697
-
-
Wang, T.1
Zhu, Y.J.2
Gai, F.3
-
79
-
-
0030979740
-
Folding funnels and energy landscapes of larger proteins within the capillarity approximation
-
Wolynes PG. 1997. Folding funnels and energy landscapes of larger proteins within the capillarity approximation. Proc. Natl. Acad. Sci. USA 94:6170-75
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 6170-6175
-
-
Wolynes, P.G.1
-
80
-
-
0038329308
-
Folding at the speed limit
-
Yang WY, Gruebele M. 2003. Folding at the speed limit. Nature 423:193-97
-
(2003)
Nature
, vol.423
, pp. 193-197
-
-
Yang, W.Y.1
Gruebele, M.2
-
81
-
-
3042814557
-
Folding λ-repressor at its speed limit
-
Yang WY, Gruebele M. 2004. Folding λ-repressor at its speed limit. Biophys. J. 87:596-608
-
(2004)
Biophys. J
, vol.87
, pp. 596-608
-
-
Yang, W.Y.1
Gruebele, M.2
-
82
-
-
5444267817
-
Rate-temperature relationships in lambda-repressor fragment lambda(6-85) folding
-
Yang WY, Gruebele AL 2004. Rate-temperature relationships in lambda-repressor fragment lambda(6-85) folding. Biochemistry 43:13018-25
-
(2004)
Biochemistry
, vol.43
, pp. 13018-13025
-
-
Yang, W.Y.1
Gruebele, A.L.2
-
83
-
-
0031475159
-
Folding thermodynamics of a model three-helix-bundle protein
-
Zhou YQ, Karplus M. 1997. Folding thermodynamics of a model three-helix-bundle protein. Proc. Natl. Acad. Sci. USA 94:14429-32
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 14429-14432
-
-
Zhou, Y.Q.1
Karplus, M.2
-
84
-
-
0346734133
-
Ultrafast folding of alpha(3): A de novo designed three-helix bundle protein
-
Zhu Y, Alonso DOV, Maki K, Huang CY, Lahr SJ, et al. 2003. Ultrafast folding of alpha(3): a de novo designed three-helix bundle protein. Proc. Natl. Acad. Sci. USA 100:15486-91
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 15486-15491
-
-
Zhu, Y.1
Alonso, D.O.V.2
Maki, K.3
Huang, C.Y.4
Lahr, S.J.5
-
85
-
-
36849141559
-
Dynamics of polymer molecules in dilute solution: Viscoelasticity, flow birefringence and dielectric loss
-
Zimm BH. 1956. Dynamics of polymer molecules in dilute solution: viscoelasticity, flow birefringence and dielectric loss. J. Chem. Phys. 24:269-78
-
(1956)
J. Chem. Phys
, vol.24
, pp. 269-278
-
-
Zimm, B.H.1
-
86
-
-
33645019703
-
Folding with downhill behavior and low cooperativity of proteins
-
Zuo GH, Wang J, Wang W. 2006. Folding with downhill behavior and low cooperativity of proteins. Proteins Struct. Funct. Bioinf. 63:165-73
-
(2006)
Proteins Struct. Funct. Bioinf
, vol.63
, pp. 165-173
-
-
Zuo, G.H.1
Wang, J.2
Wang, W.3
-
87
-
-
0024121530
-
Diffusion in a rough potential
-
Zwanzig R. 1988. Diffusion in a rough potential. Proc. Natl. Acad. Sci. USA 85:2029-30
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 2029-2030
-
-
Zwanzig, R.1
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