메뉴 건너뛰기




Volumn 21, Issue 16, 2005, Pages 3427-3428

Sarment: Python modules for HMM analysis and partitioning of sequences

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; CHROMOSOME ANALYSIS; COMPUTER ANALYSIS; COMPUTER PREDICTION; COMPUTER PROGRAM; CONTROLLED STUDY; CPG ISLAND; GENE SEQUENCE; GENETIC ALGORITHM; MAXIMUM LIKELIHOOD METHOD; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROBABILITY; SEQUENCE ANALYSIS; STATISTICAL MODEL;

EID: 24044463584     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti533     Document Type: Article
Times cited : (18)

References (13)
  • 1
    • 0034777112 scopus 로고    scopus 로고
    • Markovian domain fingerprinting: Statistical segmentation of protein sequences
    • Bejerano,G. et al. (2001) Markovian domain fingerprinting: statistical segmentation of protein sequences. Bioinformatics, 17, 927-934.
    • (2001) Bioinformatics , vol.17 , pp. 927-934
    • Bejerano, G.1
  • 2
    • 4444274988 scopus 로고    scopus 로고
    • A Bayesian approach to DNA sequence segmentation
    • Boys,R.J. and Henderson,D.A. (2004) A Bayesian approach to DNA sequence segmentation. Biometrics, 60, 573-588.
    • (2004) Biometrics , vol.60 , pp. 573-588
    • Boys, R.J.1    Henderson, D.A.2
  • 3
    • 0024557590 scopus 로고
    • Stochastic models for heterogenous DNA sequences
    • Churchill,G. (1989) Stochastic models for heterogenous DNA sequences. Bull. Math. Biol., 51, 79-94.
    • (1989) Bull. Math. Biol. , vol.51 , pp. 79-94
    • Churchill, G.1
  • 5
    • 84959042115 scopus 로고    scopus 로고
    • Segmentation by maximal predictive partitioning according to composition biases
    • Gascuel,O. and Sagot,M. (eds), LNCS 2066
    • Guéguen,L. (2001) Segmentation by maximal predictive partitioning according to composition biases. In Gascuel,O. and Sagot,M. (eds), Computational Biology, LNCS 2066, pp. 32-45.
    • (2001) Computational Biology , pp. 32-45
    • Guéguen, L.1
  • 6
    • 0026742792 scopus 로고
    • CpG islands as gene markers in the human genome
    • Larsen,F. et al. (1992) CpG islands as gene markers in the human genome. Genomics, 13, 1095-1107.
    • (1992) Genomics , vol.13 , pp. 1095-1107
    • Larsen, F.1
  • 7
    • 0035984483 scopus 로고    scopus 로고
    • Applications of recursive segmentation to the analysis of DNA sequences
    • Li,W. et al. (2002) Applications of recursive segmentation to the analysis of DNA sequences. Comput. Chem., 26, 491-510.
    • (2002) Comput. Chem. , vol.26 , pp. 491-510
    • Li, W.1
  • 8
    • 0037085737 scopus 로고    scopus 로고
    • Mining Bacillus subtilis chromosome heterogeneities using hidden Markov models
    • Nicolas,P. et al. (2002) Mining Bacillus subtilis chromosome heterogeneities using hidden Markov models. Nucleic Acids Res., 30, 1418-1426.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1418-1426
    • Nicolas, P.1
  • 9
    • 2942560068 scopus 로고    scopus 로고
    • IsoFinder: Computational prediction of isochores in genome sequences
    • Oliver,J. et al. (2004) IsoFinder: Computational prediction of isochores in genome sequences. Nucleic Acids Res., 32(Suppl. 2), W287-W292.
    • (2004) Nucleic Acids Res. , vol.32 , Issue.SUPPL. 2
    • Oliver, J.1
  • 10
    • 0033499841 scopus 로고    scopus 로고
    • Segmentation of yeast DNA using hidden Markov models
    • Peshkin,L. and Gelfand,M. (1999) Segmentation of yeast DNA using hidden Markov models. Bioinformatics, 15, 980-986.
    • (1999) Bioinformatics , vol.15 , pp. 980-986
    • Peshkin, L.1    Gelfand, M.2
  • 11
    • 0035999991 scopus 로고    scopus 로고
    • CpGProD: Identifying CpG islands associated with transcription start sites in large genomic mammalian sequences
    • Ponger,L. and Mouchiroud,D. (2001) CpGProD: Identifying CpG islands associated with transcription start sites in large genomic mammalian sequences. Bioinformatics, 18, 631-633.
    • (2001) Bioinformatics , vol.18 , pp. 631-633
    • Ponger, L.1    Mouchiroud, D.2
  • 12
    • 0024610919 scopus 로고
    • A tutorial on hidden Markov models and selected applications in speech recognition
    • Rabiner,L. (1989) A tutorial on hidden Markov models and selected applications in speech recognition. Proc. IEEE, 77, 257-285.
    • (1989) Proc. IEEE , vol.77 , pp. 257-285
    • Rabiner, L.1
  • 13
    • 0037133565 scopus 로고    scopus 로고
    • Comprehensive analysis of CpG islands in human chromosomes 21 and 22
    • Takai,D. and Jones,P. (2002) Comprehensive analysis of CpG islands in human chromosomes 21 and 22. Proc. Natl Acad. Sci. USA, 99, 3740-3745.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 3740-3745
    • Takai, D.1    Jones, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.