-
1
-
-
49649105152
-
Computational frontiers in biomedicine
-
February 1-3, 2007. New Orleans, Louisiana, USA BMC Bioinformatics 10.1186/1471-2105-8-S7-S1
-
Computational frontiers in biomedicine. Proceedings of the Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society. February 1-3, 2007. New Orleans, Louisiana, USA BMC Bioinformatics 2007, 8(Suppl 7):S1-25. 10.1186/1471-2105-8-S7-S1
-
(2007)
Proceedings of the Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society
, vol.8
, Issue.SUPPL. 7
-
-
-
2
-
-
38549178044
-
The alpha-hemolysin nanopore transduction detector - Single-molecule binding studies and immunological screening of antibodies and aptamers
-
2099501 18047732 10.1186/1471-2105-8-S7-S9
-
Winters-Hilt S The alpha-hemolysin nanopore transduction detector - single-molecule binding studies and immunological screening of antibodies and aptamers BMC Bioinformatics 2007, 8(Suppl 7):S9. 2099501 18047732 10.1186/1471-2105-8-S7-S9
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Winters-Hilt, S.1
-
3
-
-
38549090693
-
Robust clustering in high dimensional data using statistical depths
-
2099500 18047731 10.1186/1471-2105-8-S7-S8
-
Ding Y Dang X Peng H Wilkins D Robust clustering in high dimensional data using statistical depths BMC Bioinformatics 2007, 8(Suppl 7):S8. 2099500 18047731 10.1186/1471-2105-8-S7-S8
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Ding, Y.1
Dang, X.2
Peng, H.3
Wilkins, D.4
-
4
-
-
38549115194
-
Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm Eisenia fetida
-
2099499 18047730 10.1186/1471-2105-8-S7-S7
-
Pirooznia M Gong P Guan X Inouye LS Yang K Perkins EJ Deng Y Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm Eisenia fetida BMC Bioinformatics 2007, 8(Suppl 7):S7. 2099499 18047730 10.1186/1471-2105-8-S7-S7
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Pirooznia, M.1
Gong, P.2
Guan, X.3
Inouye, L.S.4
Yang, K.5
Perkins, E.J.6
Deng, Y.7
-
5
-
-
38549087004
-
Statistical tools for transgene copy number estimation based on real-time PCR
-
2099498 18047729 10.1186/1471-2105-8-S7-S6
-
Yuan JS Burris J Stewart NR Mentewab A Stewart CN Jr Statistical tools for transgene copy number estimation based on real-time PCR BMC Bioinformatics 2007, 8(Suppl 7):S6. 2099498 18047729 10.1186/ 1471-2105-8-S7-S6
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Yuan, J.S.1
Burris, J.2
Stewart, N.R.3
Mentewab, A.4
Stewart Jr., C.N.5
-
6
-
-
38549141931
-
Structure and function predictions of the Msa protein in Staphylococcus aureus
-
2099497 18047728 10.1186/1471-2105-8-S7-S5
-
Nagarajan V Elasri MO Structure and function predictions of the Msa protein in Staphylococcus aureus BMC Bioinformatics 2007, 8(Suppl 7):S5. 2099497 18047728 10.1186/1471-2105-8-S7-S5
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Nagarajan, V.1
Elasri, M.O.2
-
7
-
-
38549138424
-
Gene expression changes induced by the tumorigenic pyrrolizidine alkaloid riddelliine in liver of Big Blue rats
-
2099496 18047727 10.1186/1471-2105-8-S7-S4
-
Mei N Guo L Liu R Fuscoe JC Chen T Gene expression changes induced by the tumorigenic pyrrolizidine alkaloid riddelliine in liver of Big Blue rats BMC Bioinformatics 2007, 8(Suppl 7):S4. 2099496 18047727 10.1186/ 1471-2105-8-S7-S4
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Mei, N.1
Guo, L.2
Liu, R.3
Fuscoe, J.C.4
Chen, T.5
-
8
-
-
38549095644
-
Metabonomics evaluations of age-related changes in the urinary compositions of male Sprague Dawley rats and effects of data normalization methods on statistical and quantitative analysis
-
2099495 18047726 10.1186/1471-2105-8-S7-S3
-
Schnackenberg LK Sun J Espandiari P Holland RD Hanig J Beger RD Metabonomics evaluations of age-related changes in the urinary compositions of male Sprague Dawley rats and effects of data normalization methods on statistical and quantitative analysis BMC Bioinformatics 2007, 8(Suppl 7):S3. 2099495 18047726 10.1186/ 1471-2105-8-S7-S3
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Schnackenberg, L.K.1
Sun, J.2
Espandiari, P.3
Holland, R.D.4
Hanig, J.5
Beger, R.D.6
-
9
-
-
38549141240
-
Towards validating the hypothesis of phylogenetic profiling
-
2099494 18047725 10.1186/1471-2105-8-S7-S25
-
Loganantharaj R Atwi M Towards validating the hypothesis of phylogenetic profiling BMC Bioinformatics 2007, 8(Suppl 7):S25. 2099494 18047725 10.1186/1471-2105-8-S7-S25
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Loganantharaj, R.1
Atwi, M.2
-
10
-
-
38549091691
-
ProtQuant: A tool for the label-free quantification of MudPIT proteomics data
-
2099493 18047724 10.1186/1471-2105-8-S7-S24
-
Bridges SM Magee GB Wang N Williams WP Burgess SC Nanduri B ProtQuant: A tool for the label-free quantification of MudPIT proteomics data BMC Bioinformatics 2007, 8(Suppl 7):S24. 2099493 18047724 10.1186/ 1471-2105-8-S7-S24
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Bridges, S.M.1
Magee, G.B.2
Wang, N.3
Williams, W.P.4
Burgess, S.C.5
Nanduri, B.6
-
11
-
-
38349172005
-
Prediction of peptides observable by mass spectrometry applied at the experimental set level
-
2099492 18047723 10.1186/1471-2105-8-S7-S23
-
Sanders WS Bridges SM McCarthy FM Nanduri B Burgess SC Prediction of peptides observable by mass spectrometry applied at the experimental set level BMC Bioinformatics 2007, 8(Suppl 7):S23. 2099492 18047723 10.1186/ 1471-2105-8-S7-S23
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Sanders, W.S.1
Bridges, S.M.2
McCarthy, F.M.3
Nanduri, B.4
Burgess, S.C.5
-
12
-
-
38549094732
-
Comparison of gene expression profiles altered by comfrey and riddelliine in rat liver
-
2099491 18047722 10.1186/1471-2105-8-S7-S22
-
Guo L Mei N Dial S Fuscoe J Chen T Comparison of gene expression profiles altered by comfrey and riddelliine in rat liver BMC Bioinformatics 2007, 8(Suppl 7):S22. 2099491 18047722 10.1186/ 1471-2105-8-S7-S22
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Guo, L.1
Mei, N.2
Dial, S.3
Fuscoe, J.4
Chen, T.5
-
13
-
-
38549144819
-
A survey of DNA motif finding algorithms
-
2099490 18047721 10.1186/1471-2105-8-S7-S21
-
Das MK Dai HK A survey of DNA motif finding algorithms BMC Bioinformatics 2007, 8(Suppl 7):S21. 2099490 18047721 10.1186/ 1471-2105-8-S7-S21
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Das, M.K.1
Dai, H.K.2
-
14
-
-
38549161179
-
Nanopore-based kinetics analysis of individual antibody-channel and antibody-antigen interactions
-
2099489 18047720 10.1186/1471-2105-8-S7-S20
-
Winters-Hilt S Morales E Amin I Stoyanov A Nanopore-based kinetics analysis of individual antibody-channel and antibody-antigen interactions BMC Bioinformatics 2007, 8(Suppl 7):S20. 2099489 18047720 10.1186/1471-2105-8-S7-S20
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Winters-Hilt, S.1
Morales, E.2
Amin, I.3
Stoyanov, A.4
-
15
-
-
38549128322
-
Systems biology approach for mapping the response of human urothelial cells to infection by Enterococcus faecalis
-
2099488 18047719 10.1186/1471-2105-8-S7-S2
-
Dozmorov MG Kyker KD Saban R Shankar N Baghdayan AS Centola MB Hurst RE Systems biology approach for mapping the response of human urothelial cells to infection by Enterococcus faecalis BMC Bioinformatics 2007, 8(Suppl 7):S2. 2099488 18047719 10.1186/1471-2105-8-S7-S2
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Dozmorov, M.G.1
Kyker, K.D.2
Saban, R.3
Shankar, N.4
Baghdayan, A.S.5
Centola, M.B.6
Hurst, R.E.7
-
16
-
-
38549178489
-
A novel, fast, HMM-with-Duration implementation - For application with a new, pattern recognition informed, nanopore detector
-
2099487 18047718 10.1186/1471-2105-8-S7-S19
-
Winters-Hilt S Baribault C A novel, fast, HMM-with-Duration implementation - for application with a new, pattern recognition informed, nanopore detector BMC Bioinformatics 2007 8, (Suppl 7):S19. 2099487 18047718 10.1186/1471-2105-8-S7-S19
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Winters-Hilt, S.1
Baribault, C.2
-
17
-
-
38549155115
-
SVM clustering
-
2099486 18047717 10.1186/1471-2105-8-S7-S18
-
Winters-Hilt S Merat S SVM clustering BMC Bioinformatics 2007, 8(Suppl 7):S18. 2099486 18047717 10.1186/1471-2105-8-S7-S18
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Winters-Hilt, S.1
Merat, S.2
-
18
-
-
38549086461
-
Automatic delineation of malignancy in histopathological head and neck slides
-
2099485 18047716 10.1186/1471-2105-8-S7-S17
-
Mete M Xu X Fan CY Shafirstein G Automatic delineation of malignancy in histopathological head and neck slides BMC Bioinformatics 2007, 8(Suppl 7):S17. 2099485 18047716 10.1186/1471-2105-8-S7-S17
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Mete, M.1
Xu, X.2
Fan, C.Y.3
Shafirstein, G.4
-
19
-
-
37349050789
-
Computational analysis of biological functions and pathways collectively targeted by co-expressed microRNAs in cancer
-
2099484 18047715 10.1186/1471-2105-8-S7-S16
-
Gusev Y Schmittgen TD Lerner M Postier R Brackett D Computational analysis of biological functions and pathways collectively targeted by co-expressed microRNAs in cancer BMC Bioinformatics 2007, 8(Suppl 7):S16. 2099484 18047715 10.1186/1471-2105-8-S7-S16
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Gusev, Y.1
Schmittgen, T.D.2
Lerner, M.3
Postier, R.4
Brackett, D.5
-
20
-
-
38549170535
-
Analysis of circadian pattern reveals tissue-specific alternative transcription in leptin signaling pathway
-
2099483 18047714 10.1186/1471-2105-8-S7-S15
-
Ptitsyn AA Gimble JM Analysis of circadian pattern reveals tissue-specific alternative transcription in leptin signaling pathway BMC Bioinformatics 2007. 8(Suppl 7):S15. 2099483 18047714 10.1186/ 1471-2105-8-S7-S15
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Ptitsyn, A.A.1
Gimble, J.M.2
-
21
-
-
38549120295
-
Duration learning for analysis of nanopore ionic current blockades
-
2099482 18047713 10.1186/1471-2105-8-S7-S14
-
Churbanov A Baribault C Winters-Hilt S Duration learning for analysis of nanopore ionic current blockades BMC Bioinformatics 2007, 8(Suppl 7):S14. 2099482 18047713 10.1186/1471-2105-8-S7-S14
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Churbanov, A.1
Baribault, C.2
Winters-Hilt, S.3
-
22
-
-
38549107133
-
Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks
-
2099481 18047712 10.1186/1471-2105-8-S7-S13
-
Li P Zhang C Perkins EJ Gong P Deng Y Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks BMC Bioinformatics 2007, 8(Suppl 7):S13. 2099481 18047712 10.1186/1471-2105-8-S7-S13
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Li, P.1
Zhang, C.2
Perkins, E.J.3
Gong, P.4
Deng, Y.5
-
23
-
-
38549153363
-
Analysis of nanopore detector measurements using Machine-Learning methods, with application to single-molecule kinetic analysis
-
2099480 18047711 10.1186/1471-2105-8-S7-S12
-
Landry M Winters-Hilt S Analysis of nanopore detector measurements using Machine-Learning methods, with application to single-molecule kinetic analysis BMC Bioinformatics 2007, 8(Suppl 7):S12. 2099480 18047711 10.1186/1471-2105-8-S7-S12
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Landry, M.1
Winters-Hilt, S.2
-
24
-
-
38549109102
-
Preliminary nanopore cheminformatics analysis of aptamer-target binding strength
-
2099479 18047710 10.1186/1471-2105-8-S7-S11
-
Thomson K Amin I Morales E Winters-Hilt S Preliminary nanopore cheminformatics analysis of aptamer-target binding strength BMC Bioinformatics 2007, 8(Suppl 7):S11. 2099479 18047710 10.1186/ 1471-2105-8-S7-S11
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Thomson, K.1
Amin, I.2
Morales, E.3
Winters-Hilt, S.4
-
25
-
-
38549123996
-
Nanopore current transduction analysis of protein binding to non-terminal and terminal DNA regions: Analysis of transcription factor binding, retroviral DNA terminus dynamics, and retroviral integrase-DNA binding
-
2099478 18047709 10.1186/1471-2105-8-S7-S10
-
Winters-Hilt S Davis A Amin I Morales E Nanopore current transduction analysis of protein binding to non-terminal and terminal DNA regions: analysis of transcription factor binding, retroviral DNA terminus dynamics, and retroviral integrase-DNA binding BMC Bioinformatics 2007, 8(Suppl 7):S10. 2099478 18047709 10.1186/1471-2105-8-S7-S10
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Winters-Hilt, S.1
Davis, A.2
Amin, I.3
Morales, E.4
-
26
-
-
38549131388
-
Proceedings of the Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society
-
2099477 18047708 10.1186/1471-2105-8-S7-S1
-
Wilkins D Gusev Y Loganantharaj R Bridges S Winters-Hilt S Wren JD Proceedings of the Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society BMC Bioinformatics 2007, 8(Suppl 7):S1. 2099477 18047708 10.1186/1471-2105-8-S7-S1
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 7
-
-
Wilkins, D.1
Gusev, Y.2
Loganantharaj, R.3
Bridges, S.4
Winters-Hilt, S.5
Wren, J.D.6
-
27
-
-
57649232146
-
A Structural Approach for Finding Functional Modules from Large Biological Networks
-
Mete M Tang F Xu X Yuruk N A Structural Approach for Finding Functional Modules from Large Biological Networks BMC Bioinformatics 2008, 9(Suppl 9):S19.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 9
-
-
Mete, M.1
Tang, F.2
Xu, X.3
Yuruk, N.4
-
28
-
-
49649129157
-
From microarray to biology: An integrated experimental, statistical and in silico analysis of how the extracellular matrix modulates the phenotype of cancer cells
-
Dozmorov MG Kyker KD Hauser PJ Saban R Buethe DD Dozmorov I Centola MB Culkin DJ Hurst RE From microarray to biology: An integrated experimental, statistical and in silico analysis of how the extracellular matrix modulates the phenotype of cancer cells BMC Bioinformatics 2008, 9(Suppl 9):S4.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 9
-
-
Dozmorov, M.G.1
Kyker, K.D.2
Hauser, P.J.3
Saban, R.4
Buethe, D.D.5
Dozmorov, I.6
Centola, M.B.7
Culkin, D.J.8
Hurst, R.E.9
-
29
-
-
49649105570
-
Systems biology approach to identification of biomarkers for metastatic progression in cancer
-
Ptitsyn AA Weil MM Thamm DH Systems biology approach to identification of biomarkers for metastatic progression in cancer BMC Bioinformatics 2008, 9(Suppl 9):S8.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 9
-
-
Ptitsyn, A.A.1
Weil, M.M.2
Thamm, D.H.3
-
30
-
-
49649093775
-
Comprehensive analysis of circadian periodic pattern in plant transcriptome
-
Ptitsyn AA Comprehensive analysis of circadian periodic pattern in plant transcriptome BMC Bioinformatics 2008, 9(Suppl 9):S18.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 9
-
-
Ptitsyn, A.A.1
-
31
-
-
49649096190
-
An iterative block-shifting approach to retention time alignment that preserves the shape and area of gas chromatography-mass spectrometry peaks
-
10.1186/1471-2105-9-S1-S15
-
Chae M Shmookler Reis RJ Thaden JJ An iterative block-shifting approach to retention time alignment that preserves the shape and area of gas chromatography-mass spectrometry peaks BMC Bioinformatics 2008, 9(Suppl 9):S15. 10.1186/1471-2105-9-S1-S15
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 9
-
-
Chae, M.1
Shmookler Reis, R.J.2
Thaden, J.J.3
-
32
-
-
49649091381
-
ProteoLens: A Visual Analytic Tool for Multi-scale Database-driven Biological Network Data Mining
-
Huan T Sivachenko AY Harrison SH Chen JY ProteoLens: A Visual Analytic Tool for Multi-scale Database-driven Biological Network Data Mining BMC Bioinformatics 2008, 9(Suppl 9):S5.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 9
-
-
Huan, T.1
Sivachenko, A.Y.2
Harrison, S.H.3
Chen, J.Y.4
-
33
-
-
34548565944
-
Predicting survival from microarray data - A comparative study
-
10.1093/bioinformatics/btm305 17553857
-
Bovelstad HM Nygard S Storvold HL Aldrin M Borgan O Frigessi A Lingjaerde OC Predicting survival from microarray data - a comparative study Bioinformatics 2007, 23(16):2080-2087. 10.1093/bioinformatics/ btm305 17553857
-
(2007)
Bioinformatics
, vol.23
, Issue.16
, pp. 2080-2087
-
-
Bovelstad, H.M.1
Nygard, S.2
Storvold, H.L.3
Aldrin, M.4
Borgan, O.5
Frigessi, A.6
Lingjaerde, O.C.7
-
34
-
-
34548139028
-
Clustering microarray-derived gene lists through implicit literature relationships
-
10.1093/bioinformatics/btm261 17537751
-
Burkart MF Wren JD Herschkowitz JI Perou CM Garner HR Clustering microarray-derived gene lists through implicit literature relationships Bioinformatics 2007, 23(15):1995-2003. 10.1093/bioinformatics/btm261 17537751
-
(2007)
Bioinformatics
, vol.23
, Issue.15
, pp. 1995-2003
-
-
Burkart, M.F.1
Wren, J.D.2
Herschkowitz, J.I.3
Perou, C.M.4
Garner, H.R.5
-
35
-
-
34547844155
-
RankMotif++: A motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors
-
10.1093/bioinformatics/btm224 17646348
-
Chen X Hughes TR Morris Q RankMotif++: A motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors Bioinformatics 2007, 23(13):i72-79. 10.1093/bioinformatics/btm224 17646348
-
(2007)
Bioinformatics
, vol.23
, Issue.13
-
-
Chen, X.1
Hughes, T.R.2
Morris, Q.3
-
36
-
-
34547852250
-
Computational prediction of host-pathogen protein-protein interactions
-
10.1093/bioinformatics/btm208 17646292
-
Dyer MD Murali TM Sobral BW Computational prediction of host-pathogen protein-protein interactions Bioinformatics 2007, 23(13):i159-166. 10.1093/bioinformatics/btm208 17646292
-
(2007)
Bioinformatics
, vol.23
, Issue.13
-
-
Dyer, M.D.1
Murali, T.M.2
Sobral, B.W.3
-
37
-
-
34548550573
-
Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process
-
10.1093/bioinformatics/btm309 17553854
-
Elo LL Jarvenpaa H Oresic M Lahesmaa R Aittokallio T Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process Bioinformatics 2007, 23(16):2096-2103. 10.1093/bioinformatics/btm309 17553854
-
(2007)
Bioinformatics
, vol.23
, Issue.16
, pp. 2096-2103
-
-
Elo, L.L.1
Jarvenpaa, H.2
Oresic, M.3
Lahesmaa, R.4
Aittokallio, T.5
-
38
-
-
34547844100
-
Meta-analysis of gene expression data: A predictor-based approach
-
10.1093/bioinformatics/btm149 17463023
-
Fishel I Kaufman A Ruppin E Meta-analysis of gene expression data: A predictor-based approach Bioinformatics 2007, 23(13):1599-1606. 10.1093/ bioinformatics/btm149 17463023
-
(2007)
Bioinformatics
, vol.23
, Issue.13
, pp. 1599-1606
-
-
Fishel, I.1
Kaufman, A.2
Ruppin, E.3
-
39
-
-
34547852213
-
Time-varying modeling of gene expression regulatory networks using the wavelet dynamic vector autoregressive method
-
10.1093/bioinformatics/btm151 17463021
-
Fujita A Sato JR Garay-Malpartida HM Morettin PA Sogayar MC Ferreira CE Time-varying modeling of gene expression regulatory networks using the wavelet dynamic vector autoregressive method Bioinformatics 2007, 23(13):1623-1630. 10.1093/bioinformatics/btm151 17463021
-
(2007)
Bioinformatics
, vol.23
, Issue.13
, pp. 1623-1630
-
-
Fujita, A.1
Sato, J.R.2
Garay-Malpartida, H.M.3
Morettin, P.A.4
Sogayar, M.C.5
Ferreira, C.E.6
-
40
-
-
36448935634
-
TAPPA: Topological analysis of pathway phenotype association
-
10.1093/bioinformatics/btm460 17890270 2473868
-
Gao S Wang X TAPPA: Topological analysis of pathway phenotype association Bioinformatics 2007, 23(22):3100-3102. 10.1093/ bioinformatics/btm460 17890270 2473868
-
(2007)
Bioinformatics
, vol.23
, Issue.22
, pp. 3100-3102
-
-
Gao, S.1
Wang, X.2
-
41
-
-
34548131254
-
Mining co-regulated gene profiles for the detection of functional associations in gene expression data
-
10.1093/bioinformatics/btm276 17537754
-
Gyenesei A Wagner U Barkow-Oesterreicher S Stolte E Schlapbach R Mining co-regulated gene profiles for the detection of functional associations in gene expression data Bioinformatics 2007, 23(15):1927-1935. 10.1093/ bioinformatics/btm276 17537754
-
(2007)
Bioinformatics
, vol.23
, Issue.15
, pp. 1927-1935
-
-
Gyenesei, A.1
Wagner, U.2
Barkow-Oesterreicher, S.3
Stolte, E.4
Schlapbach, R.5
-
42
-
-
35748950713
-
Exploring the functional landscape of gene expression: Directed search of large microarray compendia
-
10.1093/bioinformatics/btm403 17724061
-
Hibbs MA Hess DC Myers CL Huttenhower C Li K Troyanskaya OG Exploring the functional landscape of gene expression: Directed search of large microarray compendia Bioinformatics 2007, 23(20):2692-2699. 10.1093/ bioinformatics/btm403 17724061
-
(2007)
Bioinformatics
, vol.23
, Issue.20
, pp. 2692-2699
-
-
Hibbs, M.A.1
Hess, D.C.2
Myers, C.L.3
Huttenhower, C.4
Li, K.5
Troyanskaya, O.G.6
-
43
-
-
34547830867
-
Comparative analysis of microarray normalization procedures: Effects on reverse engineering gene networks
-
10.1093/bioinformatics/btm201 17646307
-
Lim WK Wang K Lefebvre C Califano A Comparative analysis of microarray normalization procedures: Effects on reverse engineering gene networks Bioinformatics 2007, 23(13):i282-288. 10.1093/bioinformatics/btm201 17646307
-
(2007)
Bioinformatics
, vol.23
, Issue.13
-
-
Lim, W.K.1
Wang, K.2
Lefebvre, C.3
Califano, A.4
-
44
-
-
34248572623
-
Boolean dynamics of genetic regulatory networks inferred from microarray time series data
-
10.1093/bioinformatics/btm021 17267426
-
Martin S Zhang Z Martino A Faulon JL Boolean dynamics of genetic regulatory networks inferred from microarray time series data Bioinformatics 2007, 23(7):866-874. 10.1093/bioinformatics/btm021 17267426
-
(2007)
Bioinformatics
, vol.23
, Issue.7
, pp. 866-874
-
-
Martin, S.1
Zhang, Z.2
Martino, A.3
Faulon, J.L.4
-
45
-
-
33847296704
-
Prophet, a web-based tool for class prediction using microarray data
-
10.1093/bioinformatics/btl602 17138587
-
Medina I Montaner D Tarraga J Dopazo J Prophet, a web-based tool for class prediction using microarray data Bioinformatics 2007, 23(3):390-391. 10.1093/bioinformatics/btl602 17138587
-
(2007)
Bioinformatics
, vol.23
, Issue.3
, pp. 390-391
-
-
Medina, I.1
Montaner, D.2
Tarraga, J.3
Dopazo, J.4
-
46
-
-
33847348163
-
Causality and pathway search in microarray time series experiment
-
10.1093/bioinformatics/btl598 17158516
-
Mukhopadhyay ND Chatterjee S Causality and pathway search in microarray time series experiment Bioinformatics 2007, 23(4):442-449. 10.1093/ bioinformatics/btl598 17158516
-
(2007)
Bioinformatics
, vol.23
, Issue.4
, pp. 442-449
-
-
Mukhopadhyay, N.D.1
Chatterjee, S.2
-
47
-
-
33846707389
-
A framework for gene expression analysis
-
10.1093/bioinformatics/btl591 17118957
-
Schreiber AW Baumann U A framework for gene expression analysis Bioinformatics 2007, 23(2):191-197. 10.1093/bioinformatics/btl591 17118957
-
(2007)
Bioinformatics
, vol.23
, Issue.2
, pp. 191-197
-
-
Schreiber, A.W.1
Baumann, U.2
-
48
-
-
34547871639
-
GEOquery: A bridge between the Gene Expression Omnibus (GEO) and BioConductor
-
10.1093/bioinformatics/btm254 17496320
-
Sean D Meltzer PS GEOquery: A bridge between the Gene Expression Omnibus (GEO) and BioConductor Bioinformatics 2007, 23(14):1846-1847. 10.1093/ bioinformatics/btm254 17496320
-
(2007)
Bioinformatics
, vol.23
, Issue.14
, pp. 1846-1847
-
-
Sean, D.1
Meltzer, P.S.2
-
49
-
-
36448947175
-
Graph-based consensus clustering for class discovery from gene expression data
-
10.1093/bioinformatics/btm463 17872912
-
Yu Z Wong HS Wang H Graph-based consensus clustering for class discovery from gene expression data Bioinformatics 2007, 23(21):2888-2896. 10.1093/ bioinformatics/btm463 17872912
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2888-2896
-
-
Yu, Z.1
Wong, H.S.2
Wang, H.3
-
50
-
-
49649124942
-
Very Important Pool (VIP) Genes - An Application for Microarray-Based Molecular Signatures
-
Su Z Hong H Fang H Shi L Perkins R Tong W Very Important Pool (VIP) Genes - An Application for Microarray-Based Molecular Signatures BMC Bioinformatics 2008, 9(Suppl 9):S9.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 9
-
-
Su, Z.1
Hong, H.2
Fang, H.3
Shi, L.4
Perkins, R.5
Tong, W.6
-
52
-
-
49649090925
-
Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data
-
Rawat A Deng Y Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data BMC Bioinformatics 2008, 9(Suppl 9):S7.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. S7
-
-
Rawat, A.1
Deng, Y.2
-
53
-
-
49649083648
-
The Balance of Reproducibility, Sensitivity, and Specificity of Lists of Differentially Expressed Genes in Microarray Studies
-
Shi L Jones WD Jensen RV Harris SC Perkins RG Goodsaid FM Guo L Croner LJ Boysen C Fang H The Balance of Reproducibility, Sensitivity, and Specificity of Lists of Differentially Expressed Genes in Microarray Studies BMC Bioinformatics 2008, 9(Suppl 9):S10.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 9
-
-
Shi, L.1
Jones, W.D.2
Jensen, R.V.3
Harris, S.C.4
Perkins, R.G.5
Goodsaid, F.M.6
Guo, L.7
Croner, L.J.8
Boysen, C.9
Fang, H.10
-
54
-
-
49649129518
-
Validation of an NSP-based (negative selection pattern) gene family identification strategy
-
Frank RL Kandoth C Ercal F Validation of an NSP-based (negative selection pattern) gene family identification strategy BMC Bioinformatics 2008, 9(Suppl 9):S2.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 9
-
-
Frank, R.L.1
Kandoth, C.2
Ercal, F.3
-
55
-
-
49649088465
-
Assessing Batch Effects of Genotype Calling Algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K Array Set Using 270 HapMap Samples
-
Hong H Su Z Ge W Shi L Perkins R Fang H Xu J Chen JJ Han T Kaput J Assessing Batch Effects of Genotype Calling Algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K Array Set Using 270 HapMap Samples BMC Bioinformatics 2008, 9(Suppl 9):S17.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 9
-
-
Hong, H.1
Su, Z.2
Ge, W.3
Shi, L.4
Perkins, R.5
Fang, H.6
Xu, J.7
Chen, J.J.8
Han, T.9
Kaput, J.10
-
56
-
-
35748978819
-
Fun&Co: Identification of key functional differences in transcriptomes
-
10.1093/bioinformatics/btm425 17893090
-
Gamberoni G Lamma E Lodo G Marchesini J Mascellani N Rossi S Storari S Tagliavini L Volinia S Fun&Co: Identification of key functional differences in transcriptomes Bioinformatics 2007, 23(20):2725-2732. 10.1093/bioinformatics/btm425 17893090
-
(2007)
Bioinformatics
, vol.23
, Issue.20
, pp. 2725-2732
-
-
Gamberoni, G.1
Lamma, E.2
Lodo, G.3
Marchesini, J.4
Mascellani, N.5
Rossi, S.6
Storari, S.7
Tagliavini, L.8
Volinia, S.9
-
57
-
-
34547866080
-
STOP: Searching for transcription factor motifs using gene expression
-
10.1093/bioinformatics/btm249 17488754
-
Hertzberg L Izraeli S Domany E STOP: Searching for transcription factor motifs using gene expression Bioinformatics 2007, 23(14):1737-1743. 10.1093/bioinformatics/btm249 17488754
-
(2007)
Bioinformatics
, vol.23
, Issue.14
, pp. 1737-1743
-
-
Hertzberg, L.1
Izraeli, S.2
Domany, E.3
-
58
-
-
36448982836
-
Construction of an open-access database that integrates cross-reference information from the transcriptome and proteome of immune cells
-
10.1093/bioinformatics/btm430 17893089
-
Hijikata A Kitamura H Kimura Y Yokoyama R Aiba Y Bao Y Fujita S Hase K Hori S Ishii Y Construction of an open-access database that integrates cross-reference information from the transcriptome and proteome of immune cells Bioinformatics 2007, 23(21):2934-2941. 10.1093/ bioinformatics/btm430 17893089
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2934-2941
-
-
Hijikata, A.1
Kitamura, H.2
Kimura, Y.3
Yokoyama, R.4
Aiba, Y.5
Bao, Y.6
Fujita, S.7
Hase, K.8
Hori, S.9
Ishii, Y.10
-
59
-
-
36549009052
-
BLISS 2.0: A web-based tool for predicting conserved regulatory modules in distantly-related orthologous sequences
-
10.1093/bioinformatics/btm368 17660203
-
Meng H Banerjee A Zhou L BLISS 2.0: A web-based tool for predicting conserved regulatory modules in distantly-related orthologous sequences Bioinformatics 2007, 23(23):3249-3250. 10.1093/bioinformatics/btm368 17660203
-
(2007)
Bioinformatics
, vol.23
, Issue.23
, pp. 3249-3250
-
-
Meng, H.1
Banerjee, A.2
Zhou, L.3
-
60
-
-
36448970861
-
Inferring transcriptional regulatory networks from high-throughput data
-
10.1093/bioinformatics/btm465 17890736
-
Wang RS Wang Y Zhang XS Chen L Inferring transcriptional regulatory networks from high-throughput data Bioinformatics 2007, 23(22):3056-3064. 10.1093/bioinformatics/btm465 17890736
-
(2007)
Bioinformatics
, vol.23
, Issue.22
, pp. 3056-3064
-
-
Wang, R.S.1
Wang, Y.2
Zhang, X.S.3
Chen, L.4
-
61
-
-
36448943921
-
Context-dependent clustering for dynamic cellular state modeling of microarray gene expression
-
10.1093/bioinformatics/btm457 17846037
-
Yuan S Li KC Context-dependent clustering for dynamic cellular state modeling of microarray gene expression Bioinformatics 2007, 23(22):3039-3047. 10.1093/bioinformatics/btm457 17846037
-
(2007)
Bioinformatics
, vol.23
, Issue.22
, pp. 3039-3047
-
-
Yuan, S.1
Li, K.C.2
-
62
-
-
34447312197
-
DPTF: A database of poplar transcription factors
-
10.1093/bioinformatics/btm113 17392330
-
Zhu QH Guo AY Gao G Zhong YF Xu M Huang M Luo J DPTF: A database of poplar transcription factors Bioinformatics 2007, 23(10):1307-1308. 10.1093/bioinformatics/btm113 17392330
-
(2007)
Bioinformatics
, vol.23
, Issue.10
, pp. 1307-1308
-
-
Zhu, Q.H.1
Guo, A.Y.2
Gao, G.3
Zhong, Y.F.4
Xu, M.5
Huang, M.6
Luo, J.7
-
63
-
-
33644861212
-
ORegAnno: An open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation
-
10.1093/bioinformatics/btk027 16397004
-
Montgomery SB Griffith OL Sleumer MC Bergman CM Bilenky M Pleasance ED Prychyna Y Zhang X Jones SJ ORegAnno: An open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation Bioinformatics 2006, 22(5):637-640. 10.1093/bioinformatics/btk027 16397004
-
(2006)
Bioinformatics
, vol.22
, Issue.5
, pp. 637-640
-
-
Montgomery, S.B.1
Griffith, O.L.2
Sleumer, M.C.3
Bergman, C.M.4
Bilenky, M.5
Pleasance, E.D.6
Prychyna, Y.7
Zhang, X.8
Jones, S.J.9
-
64
-
-
33747879675
-
Informative priors based on transcription factor structural class improve de novo motif discovery
-
10.1093/bioinformatics/btl251 16873497
-
Narlikar L Gordan R Ohler U Hartemink AJ Informative priors based on transcription factor structural class improve de novo motif discovery Bioinformatics 2006, 22(14):e384-392. 10.1093/bioinformatics/btl251 16873497
-
(2006)
Bioinformatics
, vol.22
, Issue.14
-
-
Narlikar, L.1
Gordan, R.2
Ohler, U.3
Hartemink, A.J.4
-
65
-
-
33751355096
-
CREMOFAC - A database of chromatin remodeling factors
-
10.1093/bioinformatics/btl509 17021159
-
Shipra A Chetan K Rao MR CREMOFAC - a database of chromatin remodeling factors Bioinformatics 2006, 22(23):2940-2944. 10.1093/bioinformatics/ btl509 17021159
-
(2006)
Bioinformatics
, vol.22
, Issue.23
, pp. 2940-2944
-
-
Shipra, A.1
Chetan, K.2
Rao, M.R.3
-
66
-
-
33747871991
-
ARTS: Accurate recognition of transcription starts in human
-
10.1093/bioinformatics/btl250 16873509
-
Sonnenburg S Zien A Ratsch G ARTS: Accurate recognition of transcription starts in human Bioinformatics 2006, 22(14):e472-480. 10.1093/ bioinformatics/btl250 16873509
-
(2006)
Bioinformatics
, vol.22
, Issue.14
-
-
Sonnenburg, S.1
Zien, A.2
Ratsch, G.3
-
68
-
-
49649089565
-
Exhaustive prediction of disease susceptibility to coding base changes in the human genome
-
Kulkarni V Errami M Barber R Garner HR Exhaustive prediction of disease susceptibility to coding base changes in the human genome BMC Bioinformatics 2008, 9(Suppl 9):S3.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 9
-
-
Kulkarni, V.1
Errami, M.2
Barber, R.3
Garner, H.R.4
-
70
-
-
36448992941
-
Functional profiling of microarray experiments using text-mining derived bioentities
-
10.1093/bioinformatics/btm445 17855415
-
Minguez P Al-Shahrour F Montaner D Dopazo J Functional profiling of microarray experiments using text-mining derived bioentities Bioinformatics 2007, 23(22):3098-3099. 10.1093/bioinformatics/btm445 17855415
-
(2007)
Bioinformatics
, vol.23
, Issue.22
, pp. 3098-3099
-
-
Minguez, P.1
Al-Shahrour, F.2
Montaner, D.3
Dopazo, J.4
-
71
-
-
34547852211
-
A quantitative model for linking two disparate sets of articles in MEDLINE
-
10.1093/bioinformatics/btm161 17463015
-
Torvik VI Smalheiser NR A quantitative model for linking two disparate sets of articles in MEDLINE Bioinformatics 2007, 23(13):1658-1665. 10.1093/bioinformatics/btm161 17463015
-
(2007)
Bioinformatics
, vol.23
, Issue.13
, pp. 1658-1665
-
-
Torvik, V.I.1
Smalheiser, N.R.2
-
72
-
-
34249717333
-
Gene symbol disambiguation using knowledge-based profiles
-
10.1093/bioinformatics/btm056 17314123
-
Xu H Fan JW Hripcsak G Mendonca EA Markatou M Friedman C Gene symbol disambiguation using knowledge-based profiles Bioinformatics 2007, 23(8):1015-1022. 10.1093/bioinformatics/btm056 17314123
-
(2007)
Bioinformatics
, vol.23
, Issue.8
, pp. 1015-1022
-
-
Xu, H.1
Fan, J.W.2
Hripcsak, G.3
Mendonca, E.A.4
Markatou, M.5
Friedman, C.6
-
73
-
-
36749097784
-
Automated acquisition of disease drug knowledge from biomedical and clinical documents: An initial study
-
2274872 17947625 10.1197/jamia.M2401
-
Chen ES Hripcsak G Xu H Markatou M Friedman C Automated acquisition of disease drug knowledge from biomedical and clinical documents: An initial study J Am Med Inform Assoc 2008, 15(1):87-98. 2274872 17947625 10.1197/jamia.M2401
-
(2008)
J Am Med Inform Assoc
, vol.15
, Issue.1
, pp. 87-98
-
-
Chen, E.S.1
Hripcsak, G.2
Xu, H.3
Markatou, M.4
Friedman, C.5
-
74
-
-
34548527699
-
A document clustering and ranking system for exploring MEDLINE citations
-
1975797 17600104 10.1197/jamia.M2215
-
Lin Y Li W Chen K Liu Y A document clustering and ranking system for exploring MEDLINE citations J Am Med Inform Assoc 2007, 14(5):651-661. 1975797 17600104 10.1197/jamia.M2215
-
(2007)
J Am Med Inform Assoc
, vol.14
, Issue.5
, pp. 651-661
-
-
Lin, Y.1
Li, W.2
Chen, K.3
Liu, Y.4
-
75
-
-
33747894083
-
Quantitative assessment of dictionary-based protein named entity tagging
-
1561801 16799122 10.1197/jamia.M2085
-
Liu H Hu ZZ Torii M Wu C Friedman C Quantitative assessment of dictionary-based protein named entity tagging J Am Med Inform Assoc 2006, 13(5):497-507. 1561801 16799122 10.1197/jamia.M2085
-
(2006)
J Am Med Inform Assoc
, vol.13
, Issue.5
, pp. 497-507
-
-
Liu, H.1
Hu, Z.Z.2
Torii, M.3
Wu, C.4
Friedman, C.5
-
76
-
-
34250744835
-
Semantic classification of biomedical concepts using distributional similarity
-
2244895 17460124 10.1197/jamia.M2314
-
Fan JW Friedman C Semantic classification of biomedical concepts using distributional similarity J Am Med Inform Assoc 2007, 14(4):467-477. 2244895 17460124 10.1197/jamia.M2314
-
(2007)
J Am Med Inform Assoc
, vol.14
, Issue.4
, pp. 467-477
-
-
Fan, J.W.1
Friedman, C.2
-
77
-
-
34247380744
-
A novel hybrid approach to automated negation detection in clinical radiology reports
-
2244882 17329723 10.1197/jamia.M2284
-
Huang Y Lowe HJ A novel hybrid approach to automated negation detection in clinical radiology reports J Am Med Inform Assoc 2007, 14(3):304-311. 2244882 17329723 10.1197/jamia.M2284
-
(2007)
J Am Med Inform Assoc
, vol.14
, Issue.3
, pp. 304-311
-
-
Huang, Y.1
Lowe, H.J.2
-
78
-
-
34548508913
-
Evaluating the state-of-the-art in automatic de-identification
-
1975792 17600094 10.1197/jamia.M2444
-
Uzuner O Luo Y Szolovits P Evaluating the state-of-the-art in automatic de-identification J Am Med Inform Assoc 2007, 14(5):550-563. 1975792 17600094 10.1197/jamia.M2444
-
(2007)
J Am Med Inform Assoc
, vol.14
, Issue.5
, pp. 550-563
-
-
Uzuner, O.1
Luo, Y.2
Szolovits, P.3
-
79
-
-
49649105335
-
Large-scale Directional Relationship Extraction and Resolution
-
Giles CB Wren JD Large-scale Directional Relationship Extraction and Resolution BMC Bioinformatics 2008, 9(Suppl 9):S11.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 9
-
-
Giles, C.B.1
Wren, J.D.2
-
80
-
-
49649101932
-
Wanted: Unique names for unique atom positions. PDB-wide analysis of diastereotopic atom names of small molecules containing diphosphate
-
Bottoms CA Xu D Wanted: Unique names for unique atom positions. PDB-wide analysis of diastereotopic atom names of small molecules containing diphosphate BMC Bioinformatics 2008, 9(Suppl 9):S16.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 9
-
-
Bottoms, C.A.1
Xu, D.2
-
81
-
-
49649099317
-
Hybrid SVM/HMM Structural Sensors for Stochastic Sequential Data
-
Roux B Merat S Winters-Hilt S Hybrid SVM/HMM Structural Sensors for Stochastic Sequential Data BMC Bioinformatics 2008, 9(Suppl 9):S12.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 9
-
-
Roux, B.1
Merat, S.2
Winters-Hilt, S.3
-
82
-
-
49649085879
-
Clustering ionic flow blockade toggles with a Mixture of HMMs
-
Churbanov A Winters-Hilt S Clustering ionic flow blockade toggles with a Mixture of HMMs BMC Bioinformatics 2008, 9(Suppl 9):S13.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 9
-
-
Churbanov, A.1
Winters-Hilt, S.2
|