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Volumn 8, Issue SUPPL. 7, 2007, Pages

Systems biology approach for mapping the response of human urothelial cells to infection by Enterococcus faecalis

Author keywords

[No Author keywords available]

Indexed keywords

ASYMMETRIC DISTRIBUTION; BIOLOGICAL COMPONENTS; BIOLOGICAL VARIATION; CYTOSKELETAL REARRANGEMENTS; ENTEROCOCCUS FAECALIS; PATHWAY ANALYSIS; STANDARD DEVIATION; STATISTICAL PRINCIPLES;

EID: 38549128322     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-S7-S2     Document Type: Conference Paper
Times cited : (10)

References (40)
  • 1
    • 33748643414 scopus 로고    scopus 로고
    • Microarray analysis of human epithelial cell responses to bacterial interaction
    • 16918488
    • Mans JJ Lamont RJ Handfield M Microarray analysis of human epithelial cell responses to bacterial interaction Infect Disord Drug Targets 2006 6 299-309 16918488
    • (2006) Infect Disord Drug Targets , vol.6 , pp. 299-309
    • Mans, J.J.1    Lamont, R.J.2    Handfield, M.3
  • 2
    • 21444454572 scopus 로고    scopus 로고
    • Are antimicrobial peptides an alternative for conventional antibiotics?
    • 15977155
    • Kamysz W Are antimicrobial peptides an alternative for conventional antibiotics? Nucl Med Rev Cent East Eur 2005 8 78-86 15977155
    • (2005) Nucl Med Rev Cent East Eur , vol.8 , pp. 78-86
    • Kamysz, W.1
  • 3
    • 0030964241 scopus 로고    scopus 로고
    • Exploitation of mammalian host cell functions by bacterial pathogens
    • 10.1126/science.276.5313.718 9115192
    • Finlay BB Cossart P Exploitation of mammalian host cell functions by bacterial pathogens Science 1997 276 718-725 10.1126/ science.276.5313.718 9115192
    • (1997) Science , vol.276 , pp. 718-725
    • Finlay, B.B.1    Cossart, P.2
  • 4
    • 0017328059 scopus 로고
    • Role of surface mucin in primary antibacterial defense of bladder
    • 10.1016/0090-4295(77)90284-9 831354
    • Parsons CL Greenspan C Moore SW Mulholland SG Role of surface mucin in primary antibacterial defense of bladder Urology 1977 9 48-52 10.1016/ 0090-4295(77)90284-9 831354
    • (1977) Urology , vol.9 , pp. 48-52
    • Parsons, C.L.1    Greenspan, C.2    Moore, S.W.3    Mulholland, S.G.4
  • 5
    • 0033250696 scopus 로고    scopus 로고
    • The urinary tract response to entry of pathogens
    • 10.1007/s003450050160 10654365
    • Uehling DT Johnson DB Hopkins WJ The urinary tract response to entry of pathogens World J Urol 1999 17 351-358 10.1007/s003450050160 10654365
    • (1999) World J Urol , vol.17 , pp. 351-358
    • Uehling, D.T.1    Johnson, D.B.2    Hopkins, W.J.3
  • 6
    • 33845933694 scopus 로고    scopus 로고
    • Filamentation by Escherichia coli subverts innate defenses during urinary tract infection
    • 1750882 17172451 10.1073/pnas.0606329104
    • Justice SS Hunstad DA Seed PC Hultgren SJ Filamentation by Escherichia coli subverts innate defenses during urinary tract infection Proc Natl Acad Sci USA 2006 103 19884-19889 1750882 17172451 10.1073/ pnas.0606329104
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 19884-19889
    • Justice, S.S.1    Hunstad, D.A.2    Seed, P.C.3    Hultgren, S.J.4
  • 7
    • 33749012527 scopus 로고    scopus 로고
    • Mechanisms of uropathogenic Escherichia coli persistence and eradication from the urinary tract
    • 1564066 16968784 10.1073/pnas.0602136103
    • Mysorekar IU Hultgren SJ Mechanisms of uropathogenic Escherichia coli persistence and eradication from the urinary tract Proc Natl Acad Sci USA 2006 103 14170-14175 1564066 16968784 10.1073/pnas.0602136103
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 14170-14175
    • Mysorekar, I.U.1    Hultgren, S.J.2
  • 8
    • 0034885682 scopus 로고    scopus 로고
    • Prevalence of antimicrobial resistance among urinary tract pathogens isolated from female outpatients across the US in 1999
    • 10.1016/S0924-8579(01)00369-7 11516934
    • Karlowsky JA Jones ME Thornsberry C Critchley I Kelly LJ Sahm DF Prevalence of antimicrobial resistance among urinary tract pathogens isolated from female outpatients across the US in 1999 Int J Antimicrob Agents 2001 18 121-127 10.1016/S0924-8579(01)00369-7 11516934
    • (2001) Int J Antimicrob Agents , vol.18 , pp. 121-127
    • Karlowsky, J.A.1    Jones, M.E.2    Thornsberry, C.3    Critchley, I.4    Kelly, L.J.5    Sahm, D.F.6
  • 9
    • 0022447523 scopus 로고
    • Nosocomial urinary tract infections due to enterococcus. Ten years' experience at a university hospital
    • 10.1001/archinte.146.8.1549 3729635
    • Morrison AJ Jr Wenzel RP Nosocomial urinary tract infections due to enterococcus. Ten years' experience at a university hospital Arch Intern Med 1986 146 1549-1551 10.1001/archinte.146.8.1549 3729635
    • (1986) Arch Intern Med , vol.146 , pp. 1549-1551
    • Morrison Jr., A.J.1    Wenzel, R.P.2
  • 10
  • 11
    • 0036094156 scopus 로고    scopus 로고
    • Structural basis of tropism of Escherichia coli to the bladder during urinary tract infection
    • 10.1046/j.1365-2958.2002.02915.x 12010488
    • Hung CS Bouckaert J Hung D Pinkner J Widberg C DeFusco A Structural basis of tropism of Escherichia coli to the bladder during urinary tract infection Mol Microbiol 2002 44 903-915 10.1046/j.1365-2958.2002.02915.x 12010488
    • (2002) Mol Microbiol , vol.44 , pp. 903-915
    • Hung, C.S.1    Bouckaert, J.2    Hung, D.3    Pinkner, J.4    Widberg, C.5    DeFusco, A.6
  • 12
    • 0035383456 scopus 로고    scopus 로고
    • Dynamic interactions between host and pathogen during acute urinary tract infections
    • 10.1016/S0090-4295(01)01130-X 11378051
    • Schilling JD Mulvey MA Hultgren SJ Dynamic interactions between host and pathogen during acute urinary tract infections Urology 2001 57 56-61 10.1016/S0090-4295(01)01130-X 11378051
    • (2001) Urology , vol.57 , pp. 56-61
    • Schilling, J.D.1    Mulvey, M.A.2    Hultgren, S.J.3
  • 13
    • 33846326304 scopus 로고    scopus 로고
    • Genetic screening for signal transduction in the era of network biology
    • 10.1016/j.cell.2007.01.007 17254958
    • Friedman A Perrimon N Genetic screening for signal transduction in the era of network biology Cell 2007 128 225-231 10.1016/j.cell.2007.01.007 17254958
    • (2007) Cell , vol.128 , pp. 225-231
    • Friedman, A.1    Perrimon, N.2
  • 14
    • 24644519314 scopus 로고    scopus 로고
    • Significance analysis of time course microarray experiments
    • 1201697 16141318 10.1073/pnas.0504609102
    • Storey JD Xiao W Leek JT Tompkins RG Davis RW Significance analysis of time course microarray experiments Proc Natl Acad Sci USA 2005 102 12837-12842 1201697 16141318 10.1073/pnas.0504609102
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 12837-12842
    • Storey, J.D.1    Xiao, W.2    Leek, J.T.3    Tompkins, R.G.4    Davis, R.W.5
  • 15
    • 14844364789 scopus 로고    scopus 로고
    • Post-analysis follow-up and validation of microarray experiments
    • 10.1038/ng1034 12454646
    • Chuaqui RF Bonner RF Best CJ Gillespie JW Flaig MJ Hewitt SM et al Post-analysis follow-up and validation of microarray experiments Nat Genet 2002 32 Suppl 509-514 10.1038/ng1034 12454646
    • (2002) Nat Genet , vol.32 , Issue.SUPPL. , pp. 509-514
    • Chuaqui, R.F.1    Bonner, R.F.2    Best, C.J.3    Gillespie, J.W.4    Flaig, M.J.5    Hewitt, S.M.6
  • 16
    • 33748491517 scopus 로고    scopus 로고
    • The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
    • 10.1038/nbt1239 16964229
    • Shi L Reid LH Jones WD Shippy R Warrington JA Baker SC et al The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements Nat Biotechnol 2006 24 1151-1161 10.1038/nbt1239 16964229
    • (2006) Nat Biotechnol , vol.24 , pp. 1151-1161
    • Shi, L.1    Reid, L.H.2    Jones, W.D.3    Shippy, R.4    Warrington, J.A.5    Baker, S.C.6
  • 17
    • 4344713044 scopus 로고    scopus 로고
    • A family of putative MSCRAMMs from Enterococcus faecalis
    • 10.1099/mic.0.27074-0 15256550
    • Sillanpaa J Xu Y Nallapareddy SR Murray BE Hook M A family of putative MSCRAMMs from Enterococcus faecalis Microbiology 2004 150 2069-2078 10.1099/mic.0.27074-0 15256550
    • (2004) Microbiology , vol.150 , pp. 2069-2078
    • Sillanpaa, J.1    Xu, Y.2    Nallapareddy, S.R.3    Murray, B.E.4    Hook, M.5
  • 18
    • 0001654342 scopus 로고    scopus 로고
    • The role of glycosaminoglycans in normal bladder physiology and the pathophysiology of interstitial cystitis
    • Philadelphia: Lippincott-Raven Sant GR
    • Hurst RE Roy JB Parsons CL The role of glycosaminoglycans in normal bladder physiology and the pathophysiology of interstitial cystitis Interstitial Cystitis Philadelphia: Lippincott-Raven Sant GR 1997 93-100
    • (1997) Interstitial Cystitis , pp. 93-100
    • Hurst, R.E.1    Roy, J.B.2    Parsons, C.L.3
  • 19
    • 15444368857 scopus 로고    scopus 로고
    • Mechanisms of estrogen receptor signaling: Convergence of genomic and nongenomic actions on target genes
    • 10.1210/me.2004-0486 15695368
    • Bjornstrom L Sjoberg M Mechanisms of estrogen receptor signaling: convergence of genomic and nongenomic actions on target genes Mol Endocrinol 2005 19 833-842 10.1210/me.2004-0486 15695368
    • (2005) Mol Endocrinol , vol.19 , pp. 833-842
    • Bjornstrom, L.1    Sjoberg, M.2
  • 20
    • 0031392103 scopus 로고    scopus 로고
    • Expression of Sex Steroid Receptor Genes and Co-Modulation with Retinoid Signaling in Normal Human Uroepithelial Cells and Bladder Cancer Cell Lines
    • 10.1016/S1078-1439(98)00011-8
    • Waliszewski P Waliszewska MK Hemstreet GP Hurst RE Expression of Sex Steroid Receptor Genes and Co-Modulation with Retinoid Signaling in Normal Human Uroepithelial Cells and Bladder Cancer Cell Lines Urol Oncol 1997 3 141-147 10.1016/S1078-1439(98)00011-8
    • (1997) Urol Oncol , vol.3 , pp. 141-147
    • Waliszewski, P.1    Waliszewska, M.K.2    Hemstreet, G.P.3    Hurst, R.E.4
  • 21
    • 0031599585 scopus 로고    scopus 로고
    • Control of the three-dimensional growth pattern of mammary epithelium: Role of genes of the Wnt and erbB families studied using reconstituted epithelium
    • 9513708
    • Edwards PA Control of the three-dimensional growth pattern of mammary epithelium: Role of genes of the Wnt and erbB families studied using reconstituted epithelium Biochem Soc Symp 1998 63 21-34 9513708
    • (1998) Biochem Soc Symp , vol.63 , pp. 21-34
    • Edwards, P.A.1
  • 22
    • 0037108761 scopus 로고    scopus 로고
    • Innate recognition of bacteria by a macrophage cytosolic surveillance pathway
    • 129788 12359878 10.1073/pnas.202476699
    • O'Riordan M Yi CH Gonzales R Lee KD Portnoy DA Innate recognition of bacteria by a macrophage cytosolic surveillance pathway Proc Natl Acad Sci USA 2002 99 13861-13866 129788 12359878 10.1073/pnas.202476699
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 13861-13866
    • O'Riordan, M.1    Yi, C.H.2    Gonzales, R.3    Lee, K.D.4    Portnoy, D.A.5
  • 23
    • 33644531278 scopus 로고    scopus 로고
    • The inflammatory and normal transcriptome of mouse bladder detrusor and mucosa
    • 1382248 16420690 10.1186/1472-6793-6-1
    • Saban MR Hellmich HL Turner M Nguyen NB Vadigepalli R Dyer DW et al The inflammatory and normal transcriptome of mouse bladder detrusor and mucosa BMC Physiol 2006 6 1 1382248 16420690 10.1186/1472-6793-6-1
    • (2006) BMC Physiol , vol.6 , pp. 1
    • Saban, M.R.1    Hellmich, H.L.2    Turner, M.3    Nguyen, N.B.4    Vadigepalli, R.5    Dyer, D.W.6
  • 24
    • 0034640417 scopus 로고    scopus 로고
    • Analysis by high density cDNA arrays of altered gene expression in human intestinal epithelial cells in response to infection with the invasive enteric bacteria Salmonella
    • 10.1074/jbc.275.19.14084 10799483
    • Eckmann L Smith JR Housley MP Dwinell MB Kagnoff MF Analysis by high density cDNA arrays of altered gene expression in human intestinal epithelial cells in response to infection with the invasive enteric bacteria Salmonella J Biol Chem 2000 275 14084-14094 10.1074/ jbc.275.19.14084 10799483
    • (2000) J Biol Chem , vol.275 , pp. 14084-14094
    • Eckmann, L.1    Smith, J.R.2    Housley, M.P.3    Dwinell, M.B.4    Kagnoff, M.F.5
  • 25
    • 0037263735 scopus 로고    scopus 로고
    • A gene-expression program reflecting the innate immune response of cultured intestinal epithelial cells to infection by Listeria monocytogenes
    • 151283 12537547 10.1186/gb-2002-4-1-r2
    • Baldwin DN Vanchinathan V Brown PO Theriot JA A gene-expression program reflecting the innate immune response of cultured intestinal epithelial cells to infection by Listeria monocytogenes Genome Biol 2003 4 R2 151283 12537547 10.1186/gb-2002-4-1-r2
    • (2003) Genome Biol , vol.4
    • Baldwin, D.N.1    Vanchinathan, V.2    Brown, P.O.3    Theriot, J.A.4
  • 26
    • 3843092622 scopus 로고    scopus 로고
    • A specific gene expression program triggered by Gram-positive bacteria in the cytosol
    • 509177 15269347 10.1073/pnas.0403215101
    • McCaffrey RL Fawcett P O'Riordan M Lee KD Havell EA Brown PO et al A specific gene expression program triggered by Gram-positive bacteria in the cytosol Proc Natl Acad Sci USA 2004 101 11386-11391 509177 15269347 10.1073/pnas.0403215101
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 11386-11391
    • McCaffrey, R.L.1    Fawcett, P.2    O'Riordan, M.3    Lee, K.D.4    Havell, E.A.5    Brown, P.O.6
  • 27
    • 4544267616 scopus 로고    scopus 로고
    • Transcriptome analysis and gene expression profiles of early apoptosis-related genes in Streptococcus pyogenes-infected epithelial cells
    • 10.1111/j.1462-5822.2004.00412.x 15339269
    • Nakagawa I Nakata M Kawabata S Hamada S Transcriptome analysis and gene expression profiles of early apoptosis-related genes in Streptococcus pyogenes-infected epithelial cells Cell Microbiol 2004 6 939-952 10.1111/ j.1462-5822.2004.00412.x 15339269
    • (2004) Cell Microbiol , vol.6 , pp. 939-952
    • Nakagawa, I.1    Nakata, M.2    Kawabata, S.3    Hamada, S.4
  • 28
    • 0037154274 scopus 로고    scopus 로고
    • Stereotyped and specific gene expression programs in human innate immune responses to bacteria
    • 117415 11805339 10.1073/pnas.231625398
    • Boldrick JC Alizadeh AA Diehn M Dudoit S Liu CL Belcher CE et al Stereotyped and specific gene expression programs in human innate immune responses to bacteria Proc Natl Acad Sci USA 2002 99 972-977 117415 11805339 10.1073/pnas.231625398
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 972-977
    • Boldrick, J.C.1    Alizadeh, A.A.2    Diehn, M.3    Dudoit, S.4    Liu, C.L.5    Belcher, C.E.6
  • 29
    • 0035524488 scopus 로고    scopus 로고
    • Toll-like receptors and innate immunity
    • 10.1038/35100529 11905821
    • Medzhitov R Toll-like receptors and innate immunity Nat Rev Immunol 2001 1 135-145 10.1038/35100529 11905821
    • (2001) Nat Rev Immunol , vol.1 , pp. 135-145
    • Medzhitov, R.1
  • 30
    • 0141670818 scopus 로고    scopus 로고
    • The interferon in TLR signaling: More than just antiviral
    • 10.1016/j.it.2003.08.006 14552837
    • Hertzog PJ O'Neill LA Hamilton JA The interferon in TLR signaling: More than just antiviral Trends Immunol 2003 24 534-539 10.1016/ j.it.2003.08.006 14552837
    • (2003) Trends Immunol , vol.24 , pp. 534-539
    • Hertzog, P.J.1    O'Neill, L.A.2    Hamilton, J.A.3
  • 31
    • 33645224419 scopus 로고    scopus 로고
    • Toll-like receptor triggering of a vitamin D-mediated human antimicrobial response
    • 10.1126/science.1123933 16497887
    • Liu PT Stenger S Li H Wenzel L Tan BH Krutzik SR et al Toll-like receptor triggering of a vitamin D-mediated human antimicrobial response Science 2006 311 1770-1773 10.1126/science.1123933 16497887
    • (2006) Science , vol.311 , pp. 1770-1773
    • Liu, P.T.1    Stenger, S.2    Li, H.3    Wenzel, L.4    Tan, B.H.5    Krutzik, S.R.6
  • 32
    • 0036467392 scopus 로고    scopus 로고
    • Toll-like receptors: Key mediators of microbe detection
    • 10.1016/S0952-7915(01)00304-1 11790539
    • Underhill DM Ozinsky A Toll-like receptors: Key mediators of microbe detection Curr Opin Immunol 2002 14 103-110 10.1016/ S0952-7915(01)00304-1 11790539
    • (2002) Curr Opin Immunol , vol.14 , pp. 103-110
    • Underhill, D.M.1    Ozinsky, A.2
  • 33
    • 16244413193 scopus 로고    scopus 로고
    • Enterococcus faecalis tropism for the kidneys in the urinary tract of C57BL/6J mice
    • 1087416 15784592 10.1128/IAI.73.4.2461-2468.2005
    • Kau AL Martin SM Lyon W Hayes E Caparon MG Hultgren SJ Enterococcus faecalis tropism for the kidneys in the urinary tract of C57BL/6J mice Infect Immun 2005 73 2461-2468 1087416 15784592 10.1128/ IAI.73.4.2461-2468.2005
    • (2005) Infect Immun , vol.73 , pp. 2461-2468
    • Kau, A.L.1    Martin, S.M.2    Lyon, W.3    Hayes, E.4    Caparon, M.G.5    Hultgren, S.J.6
  • 35
    • 12344315879 scopus 로고    scopus 로고
    • Microarray Data Analysis Toolbox (MDAT): For normalization, adjustment and analysis of gene expression data
    • 10.1093/bioinformatics/bth424 15271778
    • Knowlton N Dozmorov IM Centola M Microarray Data Analysis Toolbox (MDAT): For normalization, adjustment and analysis of gene expression data Bioinformatics 2004 20 3687-3690 10.1093/bioinformatics/bth424 15271778
    • (2004) Bioinformatics , vol.20 , pp. 3687-3690
    • Knowlton, N.1    Dozmorov, I.M.2    Centola, M.3
  • 36
    • 84886765810 scopus 로고    scopus 로고
    • Cluster http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/ software.htm
  • 37
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • 24541 9843981 10.1073/pnas.95.25.14863
    • Eisen MB Spellman PT Brown PO Botstein D Cluster analysis and display of genome-wide expression patterns Proc Natl Acad Sci USA 1998 95 14863-14868 24541 9843981 10.1073/pnas.95.25.14863
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 38
    • 84886767412 scopus 로고    scopus 로고
    • Ingenuity Systems http://www.ingenuity.com/
  • 39
    • 0142074896 scopus 로고    scopus 로고
    • PAINT: A Promoter Analysis and Interaction Network Generation Tool for Gene Regulatory Network Identification
    • 10.1089/153623103322452378 14583114
    • Vadigepalli R Chakravarthula p Zak DE Schwaber JS Gonye GE PAINT: A Promoter Analysis and Interaction Network Generation Tool for Gene Regulatory Network Identification OMICS: A Journal of Integrative Biology 2003 7 235-252 10.1089/153623103322452378 14583114
    • (2003) OMICS: A Journal of Integrative Biology , vol.7 , pp. 235-252
    • Vadigepalli, R.1    Chakravarthula, P.2    Zak, D.E.3    Schwaber, J.S.4    Gonye, G.E.5


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