-
1
-
-
0034730140
-
Singular value decomposition for genome-wide expression data processing and modeling
-
Alter,O. et al. (2000) Singular value decomposition for genome-wide expression data processing and modeling. Proc. Natl Acad. Sci. USA, 97, 10101-10106.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 10101-10106
-
-
Alter, O.1
-
2
-
-
0036178007
-
DNA methylation and regulation of gene transcription
-
Attwood,J.T. et al. (2002) DNA methylation and regulation of gene transcription. Cell. Mol. Life Sci., 59, 241-257.
-
(2002)
Cell. Mol. Life Sci.
, vol.59
, pp. 241-257
-
-
Attwood, J.T.1
-
3
-
-
0036901602
-
Modeling transcriptional regulatory networks
-
Bolouri,H. and Davidson,E.H. (2002) Modeling transcriptional regulatory networks. Bioessays, 24, 1118-1129.
-
(2002)
Bioessays
, vol.24
, pp. 1118-1129
-
-
Bolouri, H.1
Davidson, E.H.2
-
5
-
-
0034602774
-
Knowledge-based analysis of microarray gene expression data by using support vector machines
-
Brown,M.P.S. et al. (2000) Knowledge-based analysis of microarray gene expression data by using support vector machines. Proc. Natl Acad. Sci. USA, 917, 262-267.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.917
, pp. 262-267
-
-
Brown, M.P.S.1
-
6
-
-
12744274644
-
Identification of novel heat-shock factor-dependent genes and biochemical pathways in Arabidopsis thaliana
-
Busch,W. et al. (2005) Identification of novel heat-shock factor-dependent genes and biochemical pathways in Arabidopsis thaliana. Plant J., 41, 1-14.
-
(2005)
Plant J.
, vol.41
, pp. 1-14
-
-
Busch, W.1
-
7
-
-
0842287264
-
Molecular signatures for diagnosis of infection: Application of microarray technology
-
Campbell,C. and Ghazal,P. (2004) Molecular signatures for diagnosis of infection: Application of microarray technology. J. Appl. Microbiol., 96, 18-23.
-
(2004)
J. Appl. Microbiol.
, vol.96
, pp. 18-23
-
-
Campbell, C.1
Ghazal, P.2
-
8
-
-
7744225947
-
Transcriptional networks: Reverse-engineering gene regulation on a global scale
-
Chua,G. et al. (2004) Transcriptional networks: Reverse-engineering gene regulation on a global scale. Curr. Opin. Microbiol., 7, 638-646.
-
(2004)
Curr. Opin. Microbiol.
, vol.7
, pp. 638-646
-
-
Chua, G.1
-
9
-
-
29144442380
-
Multi-way clustering of microarray data using probabilistic sparse matrix factorization
-
Dueck,D. et al. (2005) Multi-way clustering of microarray data using probabilistic sparse matrix factorization. Bioinformatics, 21 (Suppl. 1), i144-i151.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
-
-
Dueck, D.1
-
10
-
-
33745089873
-
An atlas of gene expression from seed to seed through barley development
-
Druka,A. et al. (2006) An atlas of gene expression from seed to seed through barley development. Funct. Int. Genomics, 6, 202-211.
-
(2006)
Funct. Int. Genomics
, vol.6
, pp. 202-211
-
-
Druka, A.1
-
11
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen,M.B. et al. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA, 95, 14863-14868.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
-
12
-
-
0036383067
-
Chromatin remodeling, histone modifications, and DNA methylation - How does it all fit together?
-
Geinian,T.M. and Robertson,K.D. (2002) Chromatin remodeling, histone modifications, and DNA methylation - How does it all fit together? J. Cell. Biochem., 87, 117-125.
-
(2002)
J. Cell. Biochem.
, vol.87
, pp. 117-125
-
-
Geinian, T.M.1
Robertson, K.D.2
-
13
-
-
32844455250
-
A bottom-up approach to gene regulation
-
Guido,N.J. et al. (2006) A bottom-up approach to gene regulation. Nature, 439, 856-860.
-
(2006)
Nature
, vol.439
, pp. 856-860
-
-
Guido, N.J.1
-
14
-
-
0003406531
-
-
2nd edn. University of Chicago Press, Chicago
-
Harman,H.H. (1967) Modern Factor Analysis. 2nd edn. University of Chicago Press, Chicago.
-
(1967)
Modern Factor Analysis
-
-
Harman, H.H.1
-
15
-
-
0035319006
-
Computational studies of gene regulatory networks
-
Hasty,J. et al. (2001) Computational studies of gene regulatory networks: In Numero Molecular Biology. Nat. Rev. Genet., 2, 268-279.
-
(2001)
Numero Molecular Biology. Nat. Rev. Genet.
, vol.2
, pp. 268-279
-
-
Hasty, J.1
-
16
-
-
0034682504
-
Fundamental patterns underlying gene expression profiles: Simplicity from complexity
-
Holter,N.S. et al. (2000) Fundamental patterns underlying gene expression profiles: Simplicity from complexity. Proc. Natl Acad. Sci. USA, 97, 8409-8414.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 8409-8414
-
-
Holter, N.S.1
-
17
-
-
0000466122
-
Survey on independent component analysis
-
Hyvärinen,A. (1999) Survey on independent component analysis. Neural Comp. Surv., 2, 94-128.
-
(1999)
Neural Comp. Surv.
, vol.2
, pp. 94-128
-
-
Hyvärinen, A.1
-
19
-
-
0642336165
-
The engineering of gene regulatory networks
-
Kaern,M., Blake,W.J. and Collins,J.J. (2003) The engineering of gene regulatory networks. Ann. Rev. Biomed. Eng., 5, 179-206.
-
(2003)
Ann. Rev. Biomed. Eng.
, vol.5
, pp. 179-206
-
-
Kaern, M.1
Blake, W.J.2
Collins, J.J.3
-
20
-
-
19344372220
-
A neutral model of transcriptome evolution
-
Khaitovich,P. et al. (2004) A neutral model of transcriptome evolution. PLoS Biol., 2, 0682-0689.
-
(2004)
PLoS Biol.
, vol.2
, pp. 0682-0689
-
-
Khaitovich, P.1
-
21
-
-
0004178386
-
-
Prentice Hall, Upper Saddle River, NJ
-
Khalil,H.K. (1996) Nonlinear Systems. Prentice Hall, Upper Saddle River, NJ.
-
(1996)
Nonlinear Systems
-
-
Khalil, H.K.1
-
22
-
-
0038388109
-
Reproducibility assessment of independent component analysis of expression ratios from DNA microarrays
-
Kreil,D.P. and MacKay,D.J.C. (2003) Reproducibility assessment of independent component analysis of expression ratios from DNA microarrays. Comp. Funct. Genom., 4, 300-317.
-
(2003)
Comp. Funct. Genom.
, vol.4
, pp. 300-317
-
-
Kreil, D.P.1
MacKay, D.J.C.2
-
23
-
-
1542473171
-
Application of independent component analysis to microarrays
-
Lee,S.-I. and Batzoglou,S. (2003) Application of independent component analysis to microarrays. Genome Biol., 4, R76.
-
(2003)
Genome Biol.
, vol.4
-
-
Lee, S.-I.1
Batzoglou, S.2
-
24
-
-
0345824737
-
Network component analysis: Reconstruction of regulatory signals in biological systems
-
Liao,J.C. et al. (2003) Network component analysis: Reconstruction of regulatory signals in biological systems. Proc. Natl Acad. Sci. USA, 100, 15522-15527.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 15522-15527
-
-
Liao, J.C.1
-
25
-
-
0036166753
-
Linear modes of gene expression determined by independent component analysis
-
Liebermeister,W. (2002) Linear modes of gene expression determined by independent component analysis. Bioinformatics, 18, 51-60.
-
(2002)
Bioinformatics
, vol.18
, pp. 51-60
-
-
Liebermeister, W.1
-
26
-
-
0346158346
-
Unravelling nature's networks
-
Monk,N.A. (2003) Unravelling nature's networks. Biochem. Soc. Trans., 31, 1457-1461.
-
(2003)
Biochem. Soc. Trans.
, vol.31
, pp. 1457-1461
-
-
Monk, N.A.1
-
27
-
-
0004194541
-
-
Cell Press & Blackwell Scientific Publications, Oxford, UK
-
Ptashne,M. (1992) A Genetic Switch. Cell Press & Blackwell Scientific Publications, Oxford, UK.
-
(1992)
A Genetic Switch
-
-
Ptashne, M.1
-
28
-
-
0035375137
-
Computational analysis of microarray data
-
Quackenbush,J. (2001) Computational analysis of microarray data. Nat. Rev. Genet., 2, 418-427.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 418-427
-
-
Quackenbush, J.1
-
30
-
-
0014649230
-
Biochemical Systems analysis I: Some mathematical properties of the rate law for the component enzymatic reactions
-
Savageau,M.A. (1969a) Biochemical Systems analysis I: Some mathematical properties of the rate law for the component enzymatic reactions. J. Theor. Biol., 25, 365-369.
-
(1969)
J. Theor. Biol.
, vol.25
, pp. 365-369
-
-
Savageau, M.A.1
-
31
-
-
0014658880
-
Biochemical systems analysis II: The steady-state solutions for an n-pool system using a power-law approximation
-
Savageau,M.A. (1969b) Biochemical systems analysis II: The steady-state solutions for an n-pool system using a power-law approximation. J. Theor. Biol., 25, 370-379.
-
(1969)
J. Theor. Biol.
, vol.25
, pp. 370-379
-
-
Savageau, M.A.1
-
32
-
-
0342349799
-
Recasting nonlinear differential equations as S-systems: A canonical nonlinear form
-
Savageau,M.A. et al. (1987) Recasting nonlinear differential equations as S-systems: A canonical nonlinear form. Mol. Biol. Cell, 87, 83-115.
-
(1987)
Mol. Biol. Cell
, vol.87
, pp. 83-115
-
-
Savageau, M.A.1
-
33
-
-
0031626858
-
Rules for the evolution of gene circuitry
-
Savageau,M.A. (1998) Rules for the evolution of gene circuitry. Pac. Symp. Biocomput., 3, 54-65.
-
(1998)
Pac. Symp. Biocomput.
, vol.3
, pp. 54-65
-
-
Savageau, M.A.1
-
34
-
-
14844307659
-
Modelling gene networks at different organizational levels
-
Schlitt,T. and Brazma,A. (2005) Modelling gene networks at different organizational levels. FEBS Lett., 579, 1859-1866.
-
(2005)
FEBS Lett.
, vol.579
, pp. 1859-1866
-
-
Schlitt, T.1
Brazma, A.2
-
35
-
-
16244362244
-
A gene expression map of Arabidopsis thaliana development
-
Schmid,M. et al. (2005) A gene expression map of Arabidopsis thaliana development. Nat. Genet., 37, 501-506.
-
(2005)
Nat. Genet.
, vol.37
, pp. 501-506
-
-
Schmid, M.1
-
36
-
-
11144358198
-
A gene atlas of the mouse and human protein-encoding transcriptomes
-
Su,A.I. et al. (2004) A gene atlas of the mouse and human protein-encoding transcriptomes. Proc. Natl. Acad. Sci. USA, 101, 6062-6067.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 6062-6067
-
-
Su, A.I.1
-
37
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
-
Tamayo,P. et al. (1999) Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation. Proc. Natl. Acad. Sci. USA, 96, 2907-2912.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
-
38
-
-
0033028596
-
Systematic determination of genetic network architecture
-
Tavazoie,S. et al. (1999) Systematic determination of genetic network architecture. Nat. Genet., 22, 281-285.
-
(1999)
Nat. Genet.
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
-
39
-
-
0242287927
-
The eukaryotic genome: A system regulated at different hierarchical levels
-
Van Driel,R. et al. (2003) The eukaryotic genome: A system regulated at different hierarchical levels. J. Cell. Sci., 116, 4067-4075.
-
(2003)
J. Cell. Sci.
, vol.116
, pp. 4067-4075
-
-
Van Driel, R.1
-
41
-
-
0034520437
-
Biochemical system analysis of genome-wide expression data
-
Voit,E.O. and Radivoyevitch,T. (2000) Biochemical system analysis of genome-wide expression data. Bioinformatics, 16, 1023-1037.
-
(2000)
Bioinformatics
, vol.16
, pp. 1023-1037
-
-
Voit, E.O.1
Radivoyevitch, T.2
|