-
1
-
-
33644524918
-
Mass spectrometry-based proteomics turns quantitative
-
10.1038/nchembio736 16408053
-
Ong SE Mann M Mass spectrometry-based proteomics turns quantitative Nat Chem Biol 2005 1 5 252-262 10.1038/nchembio736 16408053
-
(2005)
Nat Chem Biol
, vol.1
, Issue.5
, pp. 252-262
-
-
Ong, S.E.1
Mann, M.2
-
2
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
-
10.1038/85686 11231557
-
Washburn MP Wolters D Yates JR 3rd Large-scale analysis of the yeast proteome by multidimensional protein identification technology Nat Biotechnol 2001 19 3 242-247 10.1038/85686 11231557
-
(2001)
Nat Biotechnol
, vol.19
, Issue.3
, pp. 242-247
-
-
Washburn, M.P.1
Wolters, D.2
Yates III, J.R.3
-
3
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
10.1016/1044-0305(94)80016-2
-
Eng JK McCormack AL Yates JR 3rd An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database J Am Soc Mass Spectrom 1994 5 976-989 10.1016/ 1044-0305(94)80016-2
-
(1994)
J Am Soc Mass Spectrom
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates III, J.R.3
-
4
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
10.1002/ (SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2 10612281
-
Perkins DN Pappin DJ Creasy DM Cottrell JS Probability-based protein identification by searching sequence databases using mass spectrometry data Electrophoresis 1999 20 18 3551-3567 10.1002/ (SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2 10612281
-
(1999)
Electrophoresis
, vol.20
, Issue.18
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
5
-
-
7044246160
-
Open mass spectrometry search algorithm
-
10.1021/pr0499491 15473683
-
Geer LY Markey SP Kowalak JA Wagner L Xu M Maynard DM Yang X Shi W Bryant SH Open mass spectrometry search algorithm J Proteome Res 2004 3 5 958-964 10.1021/pr0499491 15473683
-
(2004)
J Proteome Res
, vol.3
, Issue.5
, pp. 958-964
-
-
Geer, L.Y.1
Markey, S.P.2
Kowalak, J.A.3
Wagner, L.4
Xu, M.5
Maynard, D.M.6
Yang, X.7
Shi, W.8
Bryant, S.H.9
-
6
-
-
0037108887
-
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
-
10.1021/ac025747h 12403597
-
Keller A Nesvizhskii AI Kolker E Aebersold R Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search Anal Chem 2002 74 20 5383-5392 10.1021/ac025747h 12403597
-
(2002)
Anal Chem
, vol.74
, Issue.20
, pp. 5383-5392
-
-
Keller, A.1
Nesvizhskii, A.I.2
Kolker, E.3
Aebersold, R.4
-
7
-
-
24044513966
-
Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
-
10.1038/nmeth785 16118637
-
Elias JE Haas W Faherty BK Gygi SP Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations Nat Methods 2005 2 9 667-675 10.1038/nmeth785 16118637
-
(2005)
Nat Methods
, vol.2
, Issue.9
, pp. 667-675
-
-
Elias, J.E.1
Haas, W.2
Faherty, B.K.3
Gygi, S.P.4
-
8
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
10.1038/13690 10504701
-
Gygi SP Rist B Gerber SA Turecek F Gelb MH Aebersold R Quantitative analysis of complex protein mixtures using isotope-coded affinity tags Nat Biotechnol 1999 17 10 994-999 10.1038/13690 10504701
-
(1999)
Nat Biotechnol
, vol.17
, Issue.10
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
9
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
10.1074/mcp.M400129-MCP200 15385600
-
Ross PL Huang YN Marchese JN Williamson B Parker K Hattan S Khainovski N Pillai S Dey S Daniels S Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents Mol Cell Proteomics 2004 3 12 1154-1169 10.1074/mcp.M400129-MCP200 15385600
-
(2004)
Mol Cell Proteomics
, vol.3
, Issue.12
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillai, S.8
Dey, S.9
Daniels, S.10
-
10
-
-
0035226176
-
18O labeling: A tool for proteomics
-
10.1002/rcm.525 11746917
-
Stewart II Thomson T Figeys D 18O labeling: A tool for proteomics Rapid Commun Mass Spectrom 2001 15 24 2456-2465 10.1002/rcm.525 11746917
-
(2001)
Rapid Commun Mass Spectrom
, vol.15
, Issue.24
, pp. 2456-2465
-
-
Stewart, I.I.1
Thomson, T.2
Figeys, D.3
-
11
-
-
0348142993
-
Changes in the protein expression of yeast as a function of carbon source
-
10.1021/pr034038x 14692458
-
Gao J Opiteck GJ Friedrichs MS Dongre AR Hefta SA Changes in the protein expression of yeast as a function of carbon source J Proteome Res 2003 2 6 643-649 10.1021/pr034038x 14692458
-
(2003)
J Proteome Res
, vol.2
, Issue.6
, pp. 643-649
-
-
Gao, J.1
Opiteck, G.J.2
Friedrichs, M.S.3
Dongre, A.R.4
Hefta, S.A.5
-
12
-
-
3242731195
-
A model for random sampling and estimation of relative protein abundance in shotgun proteomics
-
10.1021/ac0498563 15253663
-
Liu H Sadygov RG Yates JR 3rd A model for random sampling and estimation of relative protein abundance in shotgun proteomics Anal Chem 2004 76 14 4193-4201 10.1021/ac0498563 15253663
-
(2004)
Anal Chem
, vol.76
, Issue.14
, pp. 4193-4201
-
-
Liu, H.1
Sadygov, R.G.2
Yates III, J.R.3
-
13
-
-
0037015602
-
A proteomic view of the Plasmodium falciparum life cycle
-
10.1038/nature01107 12368866
-
Florens L Washburn MP Raine JD Anthony RM Grainger M Haynes JD Moch JK Muster N Sacci JB Tabb DL A proteomic view of the Plasmodium falciparum life cycle Nature 2002 419 6906 520-526 10.1038/nature01107 12368866
-
(2002)
Nature
, vol.419
, Issue.6906
, pp. 520-526
-
-
Florens, L.1
Washburn, M.P.2
Raine, J.D.3
Anthony, R.M.4
Grainger, M.5
Haynes, J.D.6
Moch, J.K.7
Muster, N.8
Sacci, J.B.9
Tabb, D.L.10
-
14
-
-
26844559000
-
Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
-
10.1074/mcp.M500061-MCP200 15958392
-
Ishihama Y Oda Y Tabata T Sato T Nagasu T Rappsilber J Mann M Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein Mol Cell Proteomics 2005 4 9 1265-1272 10.1074/ mcp.M500061-MCP200 15958392
-
(2005)
Mol Cell Proteomics
, vol.4
, Issue.9
, pp. 1265-1272
-
-
Ishihama, Y.1
Oda, Y.2
Tabata, T.3
Sato, T.4
Nagasu, T.5
Rappsilber, J.6
Mann, M.7
-
15
-
-
29544450310
-
Proteomic analysis using an unfinished bacterial genome: The effects of subminimum inhibitory concentrations of antibiotics on Mannheimia haemolytica virulence factor expression
-
10.1002/pmic.200500112 16247735
-
Nanduri B Lawrence ML Vanguri S Burgess SC Proteomic analysis using an unfinished bacterial genome: The effects of subminimum inhibitory concentrations of antibiotics on Mannheimia haemolytica virulence factor expression Proteomics 2005 5 18 4852-4863 10.1002/pmic.200500112 16247735
-
(2005)
Proteomics
, vol.5
, Issue.18
, pp. 4852-4863
-
-
Nanduri, B.1
Lawrence, M.L.2
Vanguri, S.3
Burgess, S.C.4
-
16
-
-
3543023287
-
Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture
-
10.1038/nbt993 15258593
-
Durr E Yu J Krasinska KM Carver LA Yates JR Testa JE Oh P Schnitzer JE Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture Nat Biotechnol 2004 22 8 985-992 10.1038/nbt993 15258593
-
(2004)
Nat Biotechnol
, vol.22
, Issue.8
, pp. 985-992
-
-
Durr, E.1
Yu, J.2
Krasinska, K.M.3
Carver, L.A.4
Yates, J.R.5
Testa, J.E.6
Oh, P.7
Schnitzer, J.E.8
-
17
-
-
34147164582
-
An ensemble approach to microarray data-based gene prioritization after missing value imputation
-
10.1093/bioinformatics/btm010 17267438
-
Hua D Lai Y An ensemble approach to microarray data-based gene prioritization after missing value imputation Bioinformatics 2007 23 6 747-754 10.1093/bioinformatics/btm010 17267438
-
(2007)
Bioinformatics
, vol.23
, Issue.6
, pp. 747-754
-
-
Hua, D.1
Lai, Y.2
-
18
-
-
28444441249
-
The influence of missing value imputation on detection of differentially expressed genes from microarray data
-
10.1093/bioinformatics/bti708 16216830
-
Scheel I Aldrin M Glad IK Sorum R Lyng H Frigessi A The influence of missing value imputation on detection of differentially expressed genes from microarray data Bioinformatics 2005 21 23 4272-4279 10.1093/ bioinformatics/bti708 16216830
-
(2005)
Bioinformatics
, vol.21
, Issue.23
, pp. 4272-4279
-
-
Scheel, I.1
Aldrin, M.2
Glad, I.K.3
Sorum, R.4
Lyng, H.5
Frigessi, A.6
-
19
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
10.1016/1044-0305(94)80016-2
-
Eng JK McCormack AL Yates JRI An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database Journal of the American Society of Mass Spectrometry 1994 5 976-989 10.1016/1044-0305(94)80016-2
-
(1994)
Journal of the American Society of Mass Spectrometry
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates, J.R.I.3
-
20
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
10.1038/nmeth1019 17327847
-
Elias JE Gygi SP Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry Nature methods 2007 4 3 207-214 10.1038/nmeth1019 17327847
-
(2007)
Nature Methods
, vol.4
, Issue.3
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
21
-
-
33644833873
-
Effects of subminimum inhibitory concentrations of antibiotics on the Pasteurella multocida proteome
-
10.1021/pr050360r 16512672
-
Nanduri B Lawrence ML Boyle CR Ramkumar M Burgess SC Effects of subminimum inhibitory concentrations of antibiotics on the Pasteurella multocida proteome J Proteome Res 2006 5 3 572-580 10.1021/pr050360r 16512672
-
(2006)
J Proteome Res
, vol.5
, Issue.3
, pp. 572-580
-
-
Nanduri, B.1
Lawrence, M.L.2
Boyle, C.R.3
Ramkumar, M.4
Burgess, S.C.5
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