메뉴 건너뛰기




Volumn 9, Issue SUPPL. 9, 2008, Pages

Validation of an NSP-based (negative selection pattern) gene family identification strategy

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; GENE FAMILIES; GENE SEQUENCES; GENOME EVOLUTION; IDENTIFICATION METHOD; IDENTIFICATION STRATEGIES; NEGATIVE SELECTION; NOVEL GENES;

EID: 49649129518     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-9-S9-S2     Document Type: Conference Paper
Times cited : (2)

References (34)
  • 1
    • 10944230777 scopus 로고    scopus 로고
    • Duplication and Divergence: The Evolution of New Genes and Old Ideas
    • 15568988
    • Taylor JS Raes J Duplication and Divergence: The Evolution of New Genes and Old Ideas Annual Review of Genetics 2004, 38:615-643. 15568988
    • (2004) Annual Review of Genetics , vol.38 , pp. 615-643
    • Taylor, J.S.1    Raes, J.2
  • 2
    • 84882516955 scopus 로고    scopus 로고
    • Large-Scale Gene and Ancient Genome Duplications
    • Elsevier Academic Press
    • Peer Van de Y Meyer A Large-Scale Gene and Ancient Genome Duplications The Evolution of the Genome Elsevier Academic Press 2005:329-368.
    • (2005) The Evolution of the Genome , pp. 329-368
    • Peer, Y.1    Meyer, A.2
  • 5
    • 84882471480 scopus 로고    scopus 로고
    • Small-Scale Gene Duplications
    • Elsevier Academic Press
    • Taylor JS Raes J Small-Scale Gene Duplications The Evolution of the Genome Elsevier Academic Press 2005:289-327.
    • (2005) The Evolution of the Genome , pp. 289-327
    • Taylor, J.S.1    Raes, J.2
  • 7
    • 33645375668 scopus 로고    scopus 로고
    • Application of DETECTER: An Evolutionary Genomic Tool to Analyze Genetic Variations to the Cystic Fibrosis Gene Family
    • 1420294 16522197
    • Gaucher EA De Kee DW Benner SA Application of DETECTER: An Evolutionary Genomic Tool to Analyze Genetic Variations to the Cystic Fibrosis Gene Family BMC Genomics 2006, 7(44):. 1420294 16522197
    • (2006) BMC Genomics , vol.7 , Issue.44
    • Gaucher, E.A.1    De Kee, D.W.2    Benner, S.A.3
  • 11
    • 0642340503 scopus 로고    scopus 로고
    • OrthoParaMap: Distinguishing Orthologs from Paralogs by Integrating Comparative Genome Data and Gene Phylogenies
    • 200972 12952558
    • Cannon SB Young ND OrthoParaMap: Distinguishing Orthologs from Paralogs by Integrating Comparative Genome Data and Gene Phylogenies BMC Bioinformatics 2003, 4(35):. 200972 12952558
    • (2003) BMC Bioinformatics , vol.4 , Issue.35
    • Cannon, S.B.1    Young, N.D.2
  • 12
    • 31744435440 scopus 로고    scopus 로고
    • Computational Identification and Systematic Analysis of the ACR Gene Family in Oryza Sativa
    • 16455358
    • Liu Q Computational Identification and Systematic Analysis of the ACR Gene Family in Oryza Sativa Journal of Plant Physiology 2006, 163(4):445-451. 16455358
    • (2006) Journal of Plant Physiology , vol.163 , Issue.4 , pp. 445-451
    • Liu, Q.1
  • 14
    • 4444343960 scopus 로고    scopus 로고
    • Genome-Wide Analysis of the GRAS Gene Family in Rice and Arabidopsis
    • 15316287
    • Tian C Wan P Sun S Li J Chen M Genome-Wide Analysis of the GRAS Gene Family in Rice and Arabidopsis Plant Molecular Biology 2004, 54(4):519-532. 15316287
    • (2004) Plant Molecular Biology , vol.54 , Issue.4 , pp. 519-532
    • Tian, C.1    Wan, P.2    Sun, S.3    Li, J.4    Chen, M.5
  • 18
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA Sequence Assembly Program
    • 310812 10508846
    • Huang X Madan A CAP3: A DNA Sequence Assembly Program Genome Research 1999, 9(9):868-877. 310812 10508846
    • (1999) Genome Research , vol.9 , Issue.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 19
    • 33846474760 scopus 로고    scopus 로고
    • A Hitchhiker's Guide to Expressed Sequence Tag (EST) Analysis
    • 16772268
    • Nagaraj SH Gasser RB Ranganathan S A Hitchhiker's Guide to Expressed Sequence Tag (EST) Analysis Briefings in Bioinformatics 2006, 8(1):6-21. 16772268
    • (2006) Briefings in Bioinformatics , vol.8 , Issue.1 , pp. 6-21
    • Nagaraj, S.H.1    Gasser, R.B.2    Ranganathan, S.3
  • 20
    • 55449129212 scopus 로고    scopus 로고
    • A Semiautomated Approach to Gene Discovery through Expressed Sequence Tag Data Mining: Discovery of New Human Transporter Genes
    • 12713273
    • Brown S Chang JL Sadée W Babbitt PC A Semiautomated Approach to Gene Discovery through Expressed Sequence Tag Data Mining: Discovery of New Human Transporter Genes AAPS PharmSci 2003, 5(1):. 12713273
    • (2003) AAPS PharmSci , vol.5 , Issue.1
    • Brown, S.1    Chang, J.L.2    Sadée, W.3    Babbitt, P.C.4
  • 21
    • 0032921649 scopus 로고    scopus 로고
    • Panning for Genes: A Visual Strategy for Identifying Novel Gene Orthologs and Paralogs
    • 310732 10207159
    • Retief JD Lynch KR Pearson WR Panning for Genes: A Visual Strategy for Identifying Novel Gene Orthologs and Paralogs Genome Research 1999, 9:373-382. 310732 10207159
    • (1999) Genome Research , vol.9 , pp. 373-382
    • Retief, J.D.1    Lynch, K.R.2    Pearson, W.R.3
  • 22
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • 3444411
    • Nei M Gojobori T Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions Mol Biol Evol 1986, 3(5):418-426. 3444411
    • (1986) Mol Biol Evol , vol.3 , Issue.5 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 23
    • 0028286120 scopus 로고
    • Variance and covariances of the numbers of synonymous and nonsynonymous substitutions per site
    • 8078400
    • Ota T Nei M Variance and covariances of the numbers of synonymous and nonsynonymous substitutions per site Mol Biol Evol 1994, 11(4):613-619. 8078400
    • (1994) Mol Biol Evol , vol.11 , Issue.4 , pp. 613-619
    • Ota, T.1    Nei, M.2
  • 24
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of Duplicate Genes by Complementary Degenerative Mutations
    • 1460548 10101175
    • Force A Lynch M Pickett FB Amores A Yan YL Postlethwait J Preservation of Duplicate Genes by Complementary Degenerative Mutations Genetics 1999, 151:1531-1545. 1460548 10101175
    • (1999) Genetics , vol.151 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.B.3    Amores, A.4    Yan, Y.L.5    Postlethwait, J.6
  • 25
    • 0041704531 scopus 로고    scopus 로고
    • Evolution of Cis-Regulatory Elements in Duplicated Genes of Yeast
    • 12902158
    • Papp B Pál C Hurst LD Evolution of Cis-Regulatory Elements in Duplicated Genes of Yeast TRENDS in Genetics 2003, 19:417-422. 12902158
    • (2003) TRENDS in Genetics , vol.19 , pp. 417-422
    • Papp, B.1    Pál, C.2    Hurst, L.D.3
  • 26
    • 13144251179 scopus 로고    scopus 로고
    • Plant Conserved Non-Coding Sequences and Paralogue Evolution
    • 15680516
    • Lockton S Gaut BS Plant Conserved Non-Coding Sequences and Paralogue Evolution TRENDS in Genetics 2005, 21:60-65. 15680516
    • (2005) TRENDS in Genetics , vol.21 , pp. 60-65
    • Lockton, S.1    Gaut, B.S.2
  • 27
    • 33644794386 scopus 로고    scopus 로고
    • Transcription Factor Families have Much Higher Expansion Rates in Plants than in Animals
    • 1203354 16166257
    • Shiu SH Shih MC Li WH Transcription Factor Families have Much Higher Expansion Rates in Plants than in Animals Plant Physiology 2005, 139:18-26. 1203354 16166257
    • (2005) Plant Physiology , vol.139 , pp. 18-26
    • Shiu, S.H.1    Shih, M.C.2    Li, W.H.3
  • 28
    • 33947327973 scopus 로고    scopus 로고
    • An Automated Method for Rapid Identification of Putative Gene Family Members in Plants
    • 1683565 17118140
    • Frank RL Mane A Ercal F An Automated Method for Rapid Identification of Putative Gene Family Members in Plants BMC Bioinformatics 2006, 7:S19. 1683565 17118140
    • (2006) BMC Bioinformatics , vol.7
    • Frank, R.L.1    Mane, A.2    Ercal, F.3
  • 29
    • 33747847779 scopus 로고    scopus 로고
    • PAL2NAL: Robust Conversion of Protein Sequence Alignments into the Corresponding Codon Alignments
    • 1538804 16845082
    • Suyama M Torrents D Bork P PAL2NAL: Robust Conversion of Protein Sequence Alignments into the Corresponding Codon Alignments Nucleic Acids Res 2006, 34:W609-W612. 1538804 16845082
    • (2006) Nucleic Acids Res , vol.34
    • Suyama, M.1    Torrents, D.2    Bork, P.3
  • 30
    • 0002222776 scopus 로고    scopus 로고
    • HIV Signature and Sequence Variation Analysis
    • Netherlands: Kluwer Academic Publishers Rodrigo AG, Learn GH
    • Korber B HIV Signature and Sequence Variation Analysis Computational Analysis of HIV Molecular Sequences Netherlands: Kluwer Academic Publishers Rodrigo AG, Learn GH 2000:55-72.
    • (2000) Computational Analysis of HIV Molecular Sequences , pp. 55-72
    • Korber, B.1
  • 31
    • 0032964297 scopus 로고    scopus 로고
    • Blast 2 sequences: A new tool for comparing protein and nucleotide sequences
    • 10339815
    • Tatiana A Tatusova TL Blast 2 sequences: A new tool for comparing protein and nucleotide sequences FEMS Microbiol Lett 1999, 174:247-250. 10339815
    • (1999) FEMS Microbiol Lett , vol.174 , pp. 247-250
    • Tatiana, A.1    Tatusova, T.L.2
  • 32
    • 33748198736 scopus 로고    scopus 로고
    • Identification and Analysis of Gene Families from the Duplicated Genome of Soybean using EST Sequences
    • 1557498 16899135
    • Nelson RT Shoemaker RC Identification and Analysis of Gene Families from the Duplicated Genome of Soybean using EST Sequences BMC Genomics 2006, 7:204. 1557498 16899135
    • (2006) BMC Genomics , vol.7 , pp. 204
    • Nelson, R.T.1    Shoemaker, R.C.2
  • 33
    • 27644597685 scopus 로고    scopus 로고
    • Evaluation of Glycine max mRNA clusters
    • 1637028 16026604
    • Frank RL Ercal F Evaluation of Glycine max mRNA clusters BMC Bioinformatics 2005, 6(Suppl 2):S7. 1637028 16026604
    • (2005) BMC Bioinformatics , vol.6 , Issue.SUPPL. 2
    • Frank, R.L.1    Ercal, F.2
  • 34
    • 0037790561 scopus 로고    scopus 로고
    • Efficient clustering of large EST data sets on parallel computers
    • 156714 12771222
    • Kalyanaraman A Aluru S Kothari S Brendel V Efficient clustering of large EST data sets on parallel computers Nucleic Acids Res 2003, 31:2963-2974. 156714 12771222
    • (2003) Nucleic Acids Res , vol.31 , pp. 2963-2974
    • Kalyanaraman, A.1    Aluru, S.2    Kothari, S.3    Brendel, V.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.