메뉴 건너뛰기




Volumn 8, Issue SUPPL. 7, 2007, Pages

Duration learning for analysis of nanopore ionic current blockades

Author keywords

[No Author keywords available]

Indexed keywords

DECAY PROCESS; DISTRIBUTED STATE; DISTRIBUTION PROBABILITY; DNA SEQUENCING; MOLECULAR ANALYSIS; PROPER MODELING; SINGLE-MOLECULE PROPERTIES; TRANSMEMBRANE CHANNELS;

EID: 38549120295     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-S7-S14     Document Type: Conference Paper
Times cited : (16)

References (25)
  • 1
    • 0030447720 scopus 로고    scopus 로고
    • Structure of Staphylococcal alpha-Hemolysin, a Heptameric Transmembrane Pore
    • 10.1126/science.274.5294.1859 8943190
    • Song L Hobaugh M Shustak C Cheley S Bayley H Gouaux J Structure of Staphylococcal alpha-Hemolysin, a Heptameric Transmembrane Pore Science 1996 274 5294 1859-1865 10.1126/science.274.5294.1859 8943190
    • (1996) Science , vol.274 , Issue.5294 , pp. 1859-1865
    • Song, L.1    Hobaugh, M.2    Shustak, C.3    Cheley, S.4    Bayley, H.5    Gouaux, J.6
  • 2
    • 0025787798 scopus 로고
    • Alpha-toxin of Staphylococcus aureus
    • 372845 1779933
    • Bhakdi S Tranum-Jensen J Alpha-toxin of Staphylococcus aureus Microbiol Rev 1991 55 4 733-751 372845 1779933
    • (1991) Microbiol Rev , vol.55 , Issue.4 , pp. 733-751
    • Bhakdi, S.1    Tranum-Jensen, J.2
  • 3
    • 0029125825 scopus 로고
    • Key Residues for Membrane Binding, Oligomerization, and Pore Forming Activity of Staphylococcal α-Hemolysin Identified by Cysteine Scanning Mutagenesis and Targeted Chemical Modification
    • 10.1074/jbc.270.39.23065 7559447
    • Walker B Bayley H Key Residues for Membrane Binding, Oligomerization, and Pore Forming Activity of Staphylococcal α-Hemolysin Identified by Cysteine Scanning Mutagenesis and Targeted Chemical Modification Journal of Biological Chemistry 1995 270 39 23065-23071 10.1074/ jbc.270.39.23065 7559447
    • (1995) Journal of Biological Chemistry , vol.270 , Issue.39 , pp. 23065-23071
    • Walker, B.1    Bayley, H.2
  • 4
    • 0028567173 scopus 로고
    • Subunit Stoichiometry of Staphylococcal alpha-Hemolysin in Crystals and on Membranes: A Heptameric Transmembrane Pore
    • 45533 7809129 10.1073/pnas.91.26.12828
    • Gouaux J Braha O Hobaugh M Song L Cheley S Shustak C Bayley H Subunit Stoichiometry of Staphylococcal alpha-Hemolysin in Crystals and on Membranes: A Heptameric Transmembrane Pore PNAS 1994 91 12828-12831 45533 7809129 10.1073/pnas.91.26.12828
    • (1994) PNAS , vol.91 , pp. 12828-12831
    • Gouaux, J.1    Braha, O.2    Hobaugh, M.3    Song, L.4    Cheley, S.5    Shustak, C.6    Bayley, H.7
  • 5
    • 0030465241 scopus 로고    scopus 로고
    • Characterization of individual polynucleotide molecules using a membrane channel
    • 19421 8943010 10.1073/pnas.93.24.13770
    • Kasianowicz J Brandindagger E Brantondagger D Deamer D Characterization of individual polynucleotide molecules using a membrane channel PNAS 1996 93 13770-13773 19421 8943010 10.1073/pnas.93.24.13770
    • (1996) PNAS , vol.93 , pp. 13770-13773
    • Kasianowicz, J.1    Brandindagger, E.2    Brantondagger, D.3    Deamer, D.4
  • 6
    • 0032762996 scopus 로고    scopus 로고
    • Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules
    • 1300593 10585944
    • Akeson M Branton D Kasianowicz J Brandin E Deamer D Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules Biophysical Journal 1999 77 3227-3233 1300593 10585944
    • (1999) Biophysical Journal , vol.77 , pp. 3227-3233
    • Akeson, M.1    Branton, D.2    Kasianowicz, J.3    Brandin, E.4    Deamer, D.5
  • 7
    • 14844318136 scopus 로고    scopus 로고
    • Nanopore Unzipping of Individual DNA Hairpin Molecules
    • 1304790 15347593 10.1529/biophysj.104.047274
    • Mathé J Visram H Viasnoff V Rabin Y Meller A Nanopore Unzipping of Individual DNA Hairpin Molecules Biophysical Journal 2004 87 3205-3212 1304790 15347593 10.1529/biophysj.104.047274
    • (2004) Biophysical Journal , vol.87 , pp. 3205-3212
    • Mathé, J.1    Visram, H.2    Viasnoff, V.3    Rabin, Y.4    Meller, A.5
  • 8
    • 0035107270 scopus 로고    scopus 로고
    • Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel
    • 10.1038/85696 11231558
    • Vercoutere W Winters-Hilt S Olsen H Deamer D Haussler D Akeson M Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel Nature Biotechnology 2001 19 248-252 10.1038/85696 11231558
    • (2001) Nature Biotechnology , vol.19 , pp. 248-252
    • Vercoutere, W.1    Winters-Hilt, S.2    Olsen, H.3    Deamer, D.4    Haussler, D.5    Akeson, M.6
  • 10
    • 0032762996 scopus 로고    scopus 로고
    • Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules
    • 1300593 10585944
    • Akeson M Branton D Kasianowicz J Brandin E Deamer D Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules Biophysical Journal 1999 77 6 3227-3233 1300593 10585944
    • (1999) Biophysical Journal , vol.77 , Issue.6 , pp. 3227-3233
    • Akeson, M.1    Branton, D.2    Kasianowicz, J.3    Brandin, E.4    Deamer, D.5
  • 11
    • 0030465241 scopus 로고    scopus 로고
    • Characterization of individual polynucleotide molecules using a membrane channel
    • 19421 8943010 10.1073/pnas.93.24.13770
    • Kasianowicz J Brandin E Branton D Deamer D Characterization of individual polynucleotide molecules using a membrane channel PNAS 1996 93 24 13770-13773 19421 8943010 10.1073/pnas.93.24.13770
    • (1996) PNAS , vol.93 , Issue.24 , pp. 13770-13773
    • Kasianowicz, J.1    Brandin, E.2    Branton, D.3    Deamer, D.4
  • 12
    • 0029196406 scopus 로고
    • A Parallel Implementation of a Hidden Markov Model with Duration Modeling for Speech Recognition
    • Mitchell C Helzerman R Jamieson L Harper M A Parallel Implementation of a Hidden Markov Model with Duration Modeling for Speech Recognition Digital Signal Processing, A Review Journal 1995 5 298-306 http://citeseer.ist.psu.edu/mitchell95parallel.html
    • (1995) Digital Signal Processing, A Review Journal , vol.5 , pp. 298-306
    • Mitchell, C.1    Helzerman, R.2    Jamieson, L.3    Harper, M.4
  • 13
    • 0024610919 scopus 로고
    • A tutorial on Hidden Markov Models and Selected Applications in Speach Recognition
    • 10.1109/5.18626
    • Rabiner L A tutorial on Hidden Markov Models and Selected Applications in Speach Recognition Proceedings of IEEE 1989 77 257-286 10.1109/5.18626
    • (1989) Proceedings of IEEE , vol.77 , pp. 257-286
    • Rabiner, L.1
  • 14
    • 13244265565 scopus 로고    scopus 로고
    • Efficient decoding algorithms for generalized hidden Markov model gene finders
    • 15667658
    • Majoros W Pertea M Delcher A Salzberg S Efficient decoding algorithms for generalized hidden Markov model gene finders BMC Bioinformatics 2005 6 16 552317 15667658
    • (2005) BMC Bioinformatics , vol.6 , Issue.16 , pp. 552317
    • Majoros, W.1    Pertea, M.2    Delcher, A.3    Salzberg, S.4
  • 15
    • 33947320566 scopus 로고    scopus 로고
    • Hidden Markov Model Variants and their Application
    • 1683574 17118135 10.1186/1471-2105-7-S2-S14
    • Winters-Hilt S Hidden Markov Model Variants and their Application BMC Bioinformatics 2006 7 Suppl 2 S14 1683574 17118135 10.1186/ 1471-2105-7-S2-S14
    • (2006) BMC Bioinformatics , vol.7 , Issue.SUPPL. 2
    • Winters-Hilt, S.1
  • 17
    • 33845913010 scopus 로고    scopus 로고
    • Sequence-dependent gating of an ion channel by DNA hairpin molecules
    • 1702491 17130164 10.1093/nar/gkl754
    • DeGuzman V Lee C Deamer D Vercoutere W Sequence-dependent gating of an ion channel by DNA hairpin molecules Nucleic Acids Research 2006 34 22 6425-6437 1702491 17130164 10.1093/nar/gkl754
    • (2006) Nucleic Acids Research , vol.34 , Issue.22 , pp. 6425-6437
    • DeGuzman, V.1    Lee, C.2    Deamer, D.3    Vercoutere, W.4
  • 20
    • 0029196406 scopus 로고
    • A Parallel Implementation of a Hidden Markov Model with Duration Modeling for Speech Recognition
    • Mitchell C Helzerman R Jamieson L Harper M A Parallel Implementation of a Hidden Markov Model with Duration Modeling for Speech Recognition Digital Signal Processing, A Review Journal 1995 5 298-306 http://citeseer.ist.psu.edu/mitchell95parallel.html
    • (1995) Digital Signal Processing, A Review Journal , vol.5 , pp. 298-306
    • Mitchell, C.1    Helzerman, R.2    Jamieson, L.3    Harper, M.4
  • 21
    • 25444496966 scopus 로고    scopus 로고
    • A linear memory algorithm for Baum-Welch training
    • 1262623 16171529 10.1186/1471-2105-6-231
    • Miklós I Meyer I A linear memory algorithm for Baum-Welch training BMC Bioinformatics 2005 6 231 1262623 16171529 10.1186/ 1471-2105-6-231
    • (2005) BMC Bioinformatics , vol.6 , pp. 231
    • Miklós, I.1    Meyer, I.2
  • 22
    • 0003857778 scopus 로고    scopus 로고
    • A Gentle Tutorial of the EM algorithm and its application to parameter Estimation for Gaussian mixture and Hidden Markov Models
    • Tech Rep TR-97-021 International Computer Science Institute
    • Bilmes J A Gentle Tutorial of the EM algorithm and its application to parameter Estimation for Gaussian mixture and Hidden Markov Models Tech Rep TR-97-021 International Computer Science Institute 1998
    • (1998)
    • Bilmes, J.1
  • 23
    • 0037503623 scopus 로고    scopus 로고
    • What HMMs can do
    • Tech rep University of Washington, Seattle
    • Bilmes J What HMMs can do Tech rep University of Washington, Seattle 2002
    • (2002)
    • Bilmes, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.