메뉴 건너뛰기




Volumn 51, Issue 8, 2008, Pages 718-733

Expression profiling analysis for genes related to meat quality and carcass traits during postnatal development of backfat in two pig breeds

Author keywords

Adipose; Clustering analysis; Differential gene expression; Gene regulatory network (GRN); Microarray; Pig

Indexed keywords

ADIPOSE TISSUE; ANIMAL; ARTICLE; BODY WEIGHT; CLUSTER ANALYSIS; DNA MICROARRAY; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE REGULATORY NETWORK; GENETICS; GROWTH, DEVELOPMENT AND AGING; HISTOLOGY; MALE; MEAT; METABOLISM; RANDOMIZATION; SWINE;

EID: 48749127708     PISSN: 10069305     EISSN: 18622798     Source Type: Journal    
DOI: 10.1007/s11427-008-0090-0     Document Type: Article
Times cited : (26)

References (53)
  • 1
    • 0037207451 scopus 로고    scopus 로고
    • 2 population Duroc×Berlin Miniature Pig and relationships to meat quality
    • 2 population Duroc×Berlin Miniature Pig and relationships to meat quality Meat Sci 63 131 139
    • (2003) Meat Sci , vol.63 , pp. 131-139
    • Fiedler, I.1    Nürnberg, K.2    Hardge, T.3
  • 2
    • 33644509230 scopus 로고    scopus 로고
    • Quality pork genes and meat production
    • G. S. Plastow D. Carrión M. Gil 2005 Quality pork genes and meat production Meat Sci 70 409 421
    • (2005) Meat Sci , vol.70 , pp. 409-421
    • Plastow, G.S.1    Carrión, D.2    Gil, M.3
  • 3
    • 33645987286 scopus 로고    scopus 로고
    • Genetic parameter estimates of meat quality traits in Duroc pigs selected for average daily gain, longissimus muscle area, backfat thickness, and intramuscular fat content
    • K. Suzuki M. Irie H. Kadowaki 2005 Genetic parameter estimates of meat quality traits in Duroc pigs selected for average daily gain, longissimus muscle area, backfat thickness, and intramuscular fat content J Anim Sci 83 2058 2065
    • (2005) J Anim Sci , vol.83 , pp. 2058-2065
    • Suzuki, K.1    Irie, M.2    Kadowaki, H.3
  • 4
    • 33746152372 scopus 로고    scopus 로고
    • Adipose tissue as a secretory organ: From adipogenesis to the metabolic syndrome
    • G. Ailhaud 2006 Adipose tissue as a secretory organ: From adipogenesis to the metabolic syndrome C R Biol 329 570 577
    • (2006) C R Biol , vol.329 , pp. 570-577
    • Ailhaud, G.1
  • 5
    • 0003874383 scopus 로고
    • Editorial Committee of "Pig Breeds in China" Scientific & Technical Publishing House Shanghai
    • Editorial Committee of "Pig Breeds in China". Pig Breeds in China (in Chinese). Shanghai: Scientific & Technical Publishing House, 1986. 155-160
    • (1986) Pig Breeds in China (in Chinese) , pp. 155-160
  • 6
    • 3242887152 scopus 로고    scopus 로고
    • Onto-Tools: An ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments
    • WebServerissue
    • P. Khatri P. Bhavsar G. Bawa 2004 Onto-Tools: An ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments Nucleic Acids Res 32 WebServerissue W449 W456
    • (2004) Nucleic Acids Res , vol.32
    • Khatri, P.1    Bhavsar, P.2    Bawa, G.3
  • 7
    • 23144448699 scopus 로고    scopus 로고
    • GoPubMed: Exploring PubMed with the Gene Ontology
    • WebServerissue
    • A. Doms M. Schroeder 2005 GoPubMed: Exploring PubMed with the Gene Ontology Nucleic Acids Res 33 WebServerissue W783 W786
    • (2005) Nucleic Acids Res , vol.33
    • Doms, A.1    Schroeder, M.2
  • 8
    • 0036319960 scopus 로고    scopus 로고
    • Design issues for cDNA microarray experiments
    • Y. H. Yang T. Speed 2002 Design issues for cDNA microarray experiments Nat Rev Genet 3 579 588
    • (2002) Nat Rev Genet , vol.3 , pp. 579-588
    • Yang, Y.H.1    Speed, T.2
  • 9
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • 4
    • Y. H. Yang S. Dudoit P. Luu 2002 Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation Nucleic Acids Res 30 4 e15 e24
    • (2002) Nucleic Acids Res , vol.30
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3
  • 10
    • 30044444274 scopus 로고    scopus 로고
    • WebArray: An online platform for microarray data analysis
    • X. Xia M. McClelland Y. Wang 2005 WebArray: An online platform for microarray data analysis BMC Bioinformatics 6 306 311
    • (2005) BMC Bioinformatics , vol.6 , pp. 306-311
    • Xia, X.1    McClelland, M.2    Wang, Y.3
  • 11
    • 18744369640 scopus 로고    scopus 로고
    • Use of within-array replicate spots for assessing differential expression in microarray experiments
    • G. K. Smyth J. Michaud H. S. Scott 2005 Use of within-array replicate spots for assessing differential expression in microarray experiments Bioinformatics 21 2067 2075
    • (2005) Bioinformatics , vol.21 , pp. 2067-2075
    • Smyth, G.K.1    Michaud, J.2    Scott, H.S.3
  • 12
    • 0034960264 scopus 로고    scopus 로고
    • Missing value estimation methods for DNA microarrays
    • O. Troyanskaya M. Cantor G. Sherlock 2001 Missing value estimation methods for DNA microarrays Bioinformatics 17 520 525
    • (2001) Bioinformatics , vol.17 , pp. 520-525
    • Troyanskaya, O.1    Cantor, M.2    Sherlock, G.3
  • 13
    • 0034927555 scopus 로고    scopus 로고
    • Analysis of variance for gene expression microarray data
    • M. K. Kerr M. Martin G. A. Churchill 2000 Analysis of variance for gene expression microarray data J Comput Biol 7 819 837
    • (2000) J Comput Biol , vol.7 , pp. 819-837
    • Kerr, M.K.1    Martin, M.2    Churchill, G.A.3
  • 14
    • 24144445705 scopus 로고    scopus 로고
    • Improved statistical tests for differential gene expression by shrinking variance components estimates
    • X. Cui J. T. Hwang J. Qiu 2005 Improved statistical tests for differential gene expression by shrinking variance components estimates Biostatistics 6 59 75
    • (2005) Biostatistics , vol.6 , pp. 59-75
    • Cui, X.1    Hwang, J.T.2    Qiu, J.3
  • 15
    • 27944474776 scopus 로고    scopus 로고
    • ErmineJ: Tool for functional analysis of gene expression data sets
    • H. K. Lee W. Braynen K. Keshav 2005 ErmineJ: Tool for functional analysis of gene expression data sets BMC Bioinformatics 6 269 276
    • (2005) BMC Bioinformatics , vol.6 , pp. 269-276
    • Lee, H.K.1    Braynen, W.2    Keshav, K.3
  • 16
    • 33646344978 scopus 로고    scopus 로고
    • STEM: A tool for the analysis of short time series gene expression data
    • J. Ernst Z. Bar-Joseph 2006 STEM: A tool for the analysis of short time series gene expression data BMC Bioinformatics 7 191 121
    • (2006) BMC Bioinformatics , vol.7 , pp. 191-121
    • Ernst, J.1    Bar-Joseph, Z.2
  • 17
    • 12344257752 scopus 로고    scopus 로고
    • GeneNetwork: An interactive tool for reconstruction of genetic networks using microarray data
    • C. C. Wu H. C. Huang H. F. Juan 2004 GeneNetwork: An interactive tool for reconstruction of genetic networks using microarray data Bioinformatics 20 3691 3693
    • (2004) Bioinformatics , vol.20 , pp. 3691-3693
    • Wu, C.C.1    Huang, H.C.2    Juan, H.F.3
  • 18
    • 33746353952 scopus 로고    scopus 로고
    • Applying dynamic Bayesian networks to perturbed gene expression data
    • N. Dojer A. Gambin A. Mizera 2006 Applying dynamic Bayesian networks to perturbed gene expression data BMC Bioinformatics 7 249 259
    • (2006) BMC Bioinformatics , vol.7 , pp. 249-259
    • Dojer, N.1    Gambin, A.2    Mizera, A.3
  • 19
    • 33750277449 scopus 로고    scopus 로고
    • Development of a new set of reference genes for normalization of real-time RT-PCR data of porcine backfat and longissimus dorsi muscle, and evaluation with PPARGC1A
    • T. Erkens M. Van Poucke J. Vandesompele 2006 Development of a new set of reference genes for normalization of real-time RT-PCR data of porcine backfat and longissimus dorsi muscle, and evaluation with PPARGC1A BMC Biotechnol 6 41 48
    • (2006) BMC Biotechnol , vol.6 , pp. 41-48
    • Erkens, T.1    Van Poucke, M.2    Vandesompele, J.3
  • 20
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • J. Vandesompele K. De Preter F. Pattyn 2002 Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes Genome Biol 3 34 45
    • (2002) Genome Biol , vol.3 , pp. 34-45
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3
  • 21
    • 0015800719 scopus 로고
    • Celluar and enzymatic changes in porcine adipose tissue during growth
    • D. B. Anderson R. G. Kauffman 1973 Celluar and enzymatic changes in porcine adipose tissue during growth J Lipid Res 14 160 168
    • (1973) J Lipid Res , vol.14 , pp. 160-168
    • Anderson, D.B.1    Kauffman, R.G.2
  • 22
    • 0035133588 scopus 로고    scopus 로고
    • Fat deposition and distribution measured by computer tomography in three genetic groups of pigs
    • K. Kolstad 2001 Fat deposition and distribution measured by computer tomography in three genetic groups of pigs Livest Prod Sci 67 281 292
    • (2001) Livest Prod Sci , vol.67 , pp. 281-292
    • Kolstad, K.1
  • 23
    • 18744378860 scopus 로고    scopus 로고
    • Empirical Bayes screening of many P values with applications to microarray studies
    • S. Datta S. Datta 2005 Empirical Bayes screening of many P values with applications to microarray studies Bioinformatics 21 1987 1994
    • (2005) Bioinformatics , vol.21 , pp. 1987-1994
    • Datta, S.1    Datta, S.2
  • 24
    • 29244448340 scopus 로고    scopus 로고
    • Microarray data analysis: From disarray to consolidation and consensus
    • D. B. Allison X. Cui G. P. Page 2006 Microarray data analysis: From disarray to consolidation and consensus Nat Rev Genet 7 55 65
    • (2006) Nat Rev Genet , vol.7 , pp. 55-65
    • Allison, D.B.1    Cui, X.2    Page, G.P.3
  • 25
    • 33845913494 scopus 로고    scopus 로고
    • Estimating P values in small microarray experiments
    • H. Yang G. Churchill 2007 Estimating P values in small microarray experiments Bioinformatics 23 38 43
    • (2007) Bioinformatics , vol.23 , pp. 38-43
    • Yang, H.1    Churchill, G.2
  • 26
    • 32544436435 scopus 로고    scopus 로고
    • The multigene family of fatty acid-binding proteins (FABPs): Function, structure and polymorphism
    • A. Chmurzyńska 2006 The multigene family of fatty acid-binding proteins (FABPs): Function, structure and polymorphism J Appl Genet 47 39 48
    • (2006) J Appl Genet , vol.47 , pp. 39-48
    • Chmurzyńska, A.1
  • 27
    • 33646727553 scopus 로고    scopus 로고
    • Investigation of two candidate genes for meat quality traits in a quantitative trait locus region on SSC6: The porcine short heterodimer partner and heart fatty acid binding protein genes
    • M. Arnyasi E. Grindflek A. Jávor 2006 Investigation of two candidate genes for meat quality traits in a quantitative trait locus region on SSC6: The porcine short heterodimer partner and heart fatty acid binding protein genes J Anim Breed Genet 123 198 203
    • (2006) J Anim Breed Genet , vol.123 , pp. 198-203
    • Arnyasi, M.1    Grindflek, E.2    Jávor, A.3
  • 28
    • 34547346649 scopus 로고    scopus 로고
    • Heart fatty acid binding protein is up-regulated during porcine adipocyte development
    • B. Li H. N. Zerby K. Lee 2007 Heart fatty acid binding protein is up-regulated during porcine adipocyte development J Anim Sci 85 1651 1659
    • (2007) J Anim Sci , vol.85 , pp. 1651-1659
    • Li, B.1    Zerby, H.N.2    Lee, K.3
  • 29
    • 48749125532 scopus 로고    scopus 로고
    • Research progress of lipoprotein lipase gene
    • J. K. Du Q. Y. Huang 2007 Research progress of lipoprotein lipase gene Yi Chuan (in Chinese) 29 8 16
    • (2007) Yi Chuan (In Chinese) , vol.29 , pp. 8-16
    • Du, J.K.1    Huang, Q.Y.2
  • 30
    • 2942563996 scopus 로고    scopus 로고
    • Dual functional roles of ATP in the human mitochondrial malic enzyme
    • W. C. Hsu H. C. Hung L. Tong 2004 Dual functional roles of ATP in the human mitochondrial malic enzyme Biochemistry 43 7382 7390
    • (2004) Biochemistry , vol.43 , pp. 7382-7390
    • Hsu, W.C.1    Hung, H.C.2    Tong, L.3
  • 31
    • 33644921767 scopus 로고    scopus 로고
    • Malic enzyme 1 genotype is associated with backfat thickness and meat quality traits in pigs
    • O. Vidal L. Varona M. A. Oliver 2006 Malic enzyme 1 genotype is associated with backfat thickness and meat quality traits in pigs Anim Genet 37 28 32
    • (2006) Anim Genet , vol.37 , pp. 28-32
    • Vidal, O.1    Varona, L.2    Oliver, M.A.3
  • 32
    • 34047269605 scopus 로고    scopus 로고
    • Stearoyl-CoA desaturase-1 mediates the pro-lipogenic effects of dietary saturated fat
    • H. Sampath M. Miyazaki A. Dobrzyn 2007 Stearoyl-CoA desaturase-1 mediates the pro-lipogenic effects of dietary saturated fat J Biol Chem 282 2483 2493
    • (2007) J Biol Chem , vol.282 , pp. 2483-2493
    • Sampath, H.1    Miyazaki, M.2    Dobrzyn, A.3
  • 33
    • 33645541712 scopus 로고    scopus 로고
    • A reduced protein diet induces stearoyl-CoA desaturase protein expression in pig muscle but not in subcutaneous adipose tissue: Relationship with intramuscular lipid formation
    • O. Doran S. K. Moule G. A. Teye 2006 A reduced protein diet induces stearoyl-CoA desaturase protein expression in pig muscle but not in subcutaneous adipose tissue: Relationship with intramuscular lipid formation Br J Nutr 95 609 617
    • (2006) Br J Nutr , vol.95 , pp. 609-617
    • Doran, O.1    Moule, S.K.2    Teye, G.A.3
  • 34
    • 25144476923 scopus 로고    scopus 로고
    • Physiological functions of the mitochondrial uncoupling proteins UCP2 and UCP3
    • M. D. Brand T. C. Esteves 2005 Physiological functions of the mitochondrial uncoupling proteins UCP2 and UCP3 Cell Metab 2 85 93
    • (2005) Cell Metab , vol.2 , pp. 85-93
    • Brand, M.D.1    Esteves, T.C.2
  • 35
    • 33847158879 scopus 로고    scopus 로고
    • UCP2 and 3 deletion screening and distribution in 15 pig breeds
    • Y. Li H. Li X. Zhao 2007 UCP2 and 3 deletion screening and distribution in 15 pig breeds Biochem Genet 45 103 111
    • (2007) Biochem Genet , vol.45 , pp. 103-111
    • Li, Y.1    Li, H.2    Zhao, X.3
  • 36
    • 33645529346 scopus 로고    scopus 로고
    • Genetics and regulation of angiopoietin-like proteins 3 and 4
    • C. Li 2006 Genetics and regulation of angiopoietin-like proteins 3 and 4 Curr Opin Lipidol 17 152 156
    • (2006) Curr Opin Lipidol , vol.17 , pp. 152-156
    • Li, C.1
  • 37
    • 33744993202 scopus 로고    scopus 로고
    • Cloning, chromosome mapping and expression characteristics of porcine ANGPTL3 and -4
    • S. Q. Feng X. D. Chen T. Xia 2006 Cloning, chromosome mapping and expression characteristics of porcine ANGPTL3 and -4 Cytogenet Genome Res 114 44 49
    • (2006) Cytogenet Genome Res , vol.114 , pp. 44-49
    • Feng, S.Q.1    Chen, X.D.2    Xia, T.3
  • 38
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • M. B. Eisen P. T. Spellman P. O. Brown 1998 Cluster analysis and display of genome-wide expression patterns Proc Natl Acad Sci USA 95 14863 14868
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3
  • 39
    • 0033028596 scopus 로고    scopus 로고
    • Systematic determination of genetic network architecture
    • S. Tavazoie J. D. Hughes M. J. Campbell 1999 Systematic determination of genetic network architecture Nat Genet 22 281 285
    • (1999) Nat Genet , vol.22 , pp. 281-285
    • Tavazoie, S.1    Hughes, J.D.2    Campbell, M.J.3
  • 40
    • 0033027794 scopus 로고    scopus 로고
    • Interpreting patterns of gene expression with self organizing maps: Methods and applications to hematopoietic differentiation
    • P. Tamayo D. Slonim J. Mesirov 1999 Interpreting patterns of gene expression with self organizing maps: methods and applications to hematopoietic differentiation Proc Natl Acad Sci USA 96 2907 2912
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 2907-2912
    • Tamayo, P.1    Slonim, D.2    Mesirov, J.3
  • 42
    • 0041346457 scopus 로고    scopus 로고
    • Continuous representations of time-series gene expression data
    • Z. Bar-Joseph G. K. Gerber D. K. Gifford 2003 Continuous representations of time-series gene expression data J Comput Biol 10 341 356
    • (2003) J Comput Biol , vol.10 , pp. 341-356
    • Bar-Joseph, Z.1    Gerber, G.K.2    Gifford, D.K.3
  • 43
    • 4944252468 scopus 로고    scopus 로고
    • Using hidden Markov models to analyze gene expression time course data
    • Suppl1
    • A. Schliep A. Schönhuth C. Steinhoff 2003 Using hidden Markov models to analyze gene expression time course data Bioinformatics 19 Suppl1 255 263
    • (2003) Bioinformatics , vol.19 , pp. 255-263
    • Schliep, A.1    Schönhuth, A.2    Steinhoff, C.3
  • 44
    • 28644452470 scopus 로고    scopus 로고
    • Clustering short time series gene expression data
    • Suppl1
    • J. Ernst G. J. Nau Z. Bar-Joseph 2005 Clustering short time series gene expression data Bioinformatics 21 Suppl1 159 168
    • (2005) Bioinformatics , vol.21 , pp. 159-168
    • Ernst, J.1    Nau, G.J.2    Bar-Joseph, Z.3
  • 45
    • 0036400724 scopus 로고    scopus 로고
    • Dynamics of Boolean networks controlled by biologically meaningful functions
    • L. Raeymaekers 2002 Dynamics of Boolean networks controlled by biologically meaningful functions J Theor Biol 218 331 341
    • (2002) J Theor Biol , vol.218 , pp. 331-341
    • Raeymaekers, L.1
  • 46
    • 0032612220 scopus 로고    scopus 로고
    • Linear modeling of mRNA expression levels during CNS development and injury
    • P. D'haeseleer X. Wen S. Fuhrman 1999 Linear modeling of mRNA expression levels during CNS development and injury Pac Symp Biocomput 4 41 52
    • (1999) Pac Symp Biocomput , vol.4 , pp. 41-52
    • D'Haeseleer, P.1    Wen, X.2    Fuhrman, S.3
  • 47
    • 33749825955 scopus 로고    scopus 로고
    • Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, Graphical Gaussian models and Bayesian networks
    • A. V. Werhli M. Grzegorczyk D. Husmeier 2006 Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, Graphical Gaussian models and Bayesian networks Bioinformatics 22 2523 2531
    • (2006) Bioinformatics , vol.22 , pp. 2523-2531
    • Werhli, A.V.1    Grzegorczyk, M.2    Husmeier, D.3
  • 48
    • 0043130707 scopus 로고    scopus 로고
    • Inferring gene regulatory networks from time-ordered gene expression data of Bacillus subtilis using differential equations
    • M. J. de Hoon S. Imoto K. Kobayashi 2003 Inferring gene regulatory networks from time-ordered gene expression data of Bacillus subtilis using differential equations Pac Symp Biocomput 8 17 28
    • (2003) Pac Symp Biocomput , vol.8 , pp. 17-28
    • De Hoon, M.J.1    Imoto, S.2    Kobayashi, K.3
  • 49
    • 27744497128 scopus 로고    scopus 로고
    • Leptin: Structure, function and biology
    • F. Zhang Y. Chen M. Heiman 2005 Leptin: Structure, function and biology Vitam Horm 71 345 372
    • (2005) Vitam Horm , vol.71 , pp. 345-372
    • Zhang, F.1    Chen, Y.2    Heiman, M.3
  • 50
    • 0035039275 scopus 로고    scopus 로고
    • Insulin and leptin acutely regulate cholesterol ester metabolism in macrophages by novel signaling pathways
    • L. O'Rourke S. J. Yeaman P. R. Shepherd 2001 Insulin and leptin acutely regulate cholesterol ester metabolism in macrophages by novel signaling pathways Diabetes 50 955 961
    • (2001) Diabetes , vol.50 , pp. 955-961
    • O'Rourke, L.1    Yeaman, S.J.2    Shepherd, P.R.3
  • 51
    • 34547488447 scopus 로고    scopus 로고
    • Plasma leptin levels are related to body composition, sex, insulin levels and the A55V polymorphism of the UCP2 gene
    • K. A. Rance A. M. Johnstone S. Murison 2007 Plasma leptin levels are related to body composition, sex, insulin levels and the A55V polymorphism of the UCP2 gene Int J Obes 31 1311 1318
    • (2007) Int J Obes , vol.31 , pp. 1311-1318
    • Rance, K.A.1    Johnstone, A.M.2    Murison, S.3
  • 52
    • 33751213896 scopus 로고    scopus 로고
    • Angiopoietin-like protein 4 converts lipoprotein lipase to inactive monomers and modulates lipase activity in adipose tissue
    • V. Sukonina A. Lookene T. Olivecrona 2006 Angiopoietin-like protein 4 converts lipoprotein lipase to inactive monomers and modulates lipase activity in adipose tissue Proc Natl Acad Sci USA 103 17450 17455
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 17450-17455
    • Sukonina, V.1    Lookene, A.2    Olivecrona, T.3
  • 53
    • 32144437945 scopus 로고    scopus 로고
    • Evaluation of methods for oligonucleotide array data via quantitative real-time PCR
    • L. X. Qin R. P. Beyer F. N. Hudson 2006 Evaluation of methods for oligonucleotide array data via quantitative real-time PCR BMC Bioinformatics 7 23 34
    • (2006) BMC Bioinformatics , vol.7 , pp. 23-34
    • Qin, L.X.1    Beyer, R.P.2    Hudson, F.N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.