Investigation of two candidate genes for meat quality traits in a quantitative trait locus region on SSC6: The porcine short heterodimer partner and heart fatty acid binding protein genes

Journal of Animal Breeding and Genetics

Volumn 123, Issue 3, 2006, Pages 198-203

  Arnyasi M ^a   Grindflek, E ^b,c   Javor A ^a   Lien, S ^b,c  

^a UNIVERSITY OF DEBRECEN   (Hungary)

^b Norsvin   (Norway)

^c NORWEGIAN UNIVERSITY OF LIFE SCIENCES   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

CELL RECEPTOR; FABP3 PROTEIN, HUMAN; FATTY ACID BINDING PROTEIN; PRIMER DNA; SMALL HETERODIMER PARTNER PROTEIN;

ANIMAL; ANIMAL DISEASE; ARTICLE; CHEMISTRY; CHROMOSOME; CHROMOSOME MAP; CLASSIFICATION; COMPARATIVE STUDY; FEMALE; GENETICS; HAPLOTYPE; MALE; MEAT; POLYMERASE CHAIN REACTION; QUANTITATIVE TRAIT LOCUS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SINGLE NUCLEOTIDE POLYMORPHISM; STANDARD; SWINE;

ANIMALS; CHROMOSOME MAPPING; CHROMOSOMES; DNA PRIMERS; FATTY ACID-BINDING PROTEINS; FEMALE; HAPLOTYPES; MALE; MEAT; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; POLYMORPHISM, SINGLE NUCLEOTIDE; QUANTITATIVE TRAIT LOCI; RECEPTORS, CYTOPLASMIC AND NUCLEAR; SWINE;

SUIDAE; SUS SCROFA;

EID: 33646727553     PISSN: 09312668     EISSN: 14390388     Source Type: Journal    
DOI: 10.1111/j.1439-0388.2006.00588.x     Document Type: Article

References (20)

1. Brendel C., Schoonjans K., Botrugno O.A., Treuter E., Auwerx J. 2002 The small heterodimer partner interacts with the liver X receptor alpha and represses its transcriptional activity. Mol. Endocrinol., 16, 2065 2076.
2. Chawla A., Repa J.J., Evans R.M., Mangelsdorf D.J. 2001 Nuclear receptors and lipid physiology: opening the X-files. Science, 30, 1866 1870.
3. Gerbens F., Rettenberger G., Lenstra J.A., Veerkamp J.H., te Pas M.F. 1997 Characterization, chromosomal localization, and genetic variation of the porcine heart fatty acid-binding protein gene. Mamm. Genome, 8, 328 332.
4. Gerbens F., van Erp A.J.M., Harders F.L., Verburg F.J., Meuwissen T.H.E., Veerkamp J.H., te Pas M.F. 1999 Effect of genetic variants of the heart fatty acid-binding protein gene on intramuscular fat and performance traits in pigs. J. Anim. Sci., 77, 846 852.
5. Gerbens F., de Koning D.J., Harders F.L., Meuwissen T.H., Janss L.L., Groenen M.A., Veerkamp J.H., Van Arendonk J.A, te Pas M.F. 2000 The effect of adipocyte and heart fatty acid-binding protein genes on intramuscular fat and backfat content in Meishan crossbred pigs. J. Anim. Sci., 78, 552 559.
6. Gerbens F., Verburg F.J., Van Moerkerk H.T.B., Engel B., Buist W., Veerkamp J.H., te Pas M.F. 2001 Associations of heart and adipocyte fatty acid-binding protein gene expression with intramuscular fat content in pigs. J. Anim. Sci., 79, 347 354.
7. Green P., Falls K., Crooks S. 1990 Documentation for CRI-MAP, version 2.4. Washington University School of Medicine, St Louis, MO.
8. Grindflek E., Szyda J., Liu Z., Lien S. 2001 Detection of quantitative trait loci for meat quality in a commercial slaughter pig cross. Mamm. Genome, 12, 299 304.
9. Grindflek, E., Szyda, J., Liu, Z., Lien, S. 2002 Detection of QTL for intramuscular fat on porcine chromosome 6. Proc. 7th WCGALP, Montpellier, France, 19-23. August. In: Proc. 7th WCGALP, 03, CD-rom Communication No. ISBN 2-7380-1052-0.
10. Kassam A., Capone J.P., Rachubinski R.A. 2001 The short heterodimer partner receptor differentially modulates peroxisome proliferator-activated receptor alpha-mediated transcription from the peroxisome proliferator-response elements of the genes encoding the peroxisomal beta-oxidation enzymes acyl-CoA oxidase and hydratase-dehydrogenase. Mol. Cell Endocrinol., 15, 49 56.
11. Lee H.K., Lee Y.K., Park S.H., Kim Y.S., Park S.H., Lee J.W., Kwon H.B., Soh J., Moore D.D., Choi H.S. 1998 Structure and expression of the orphan nuclear receptor SHP gene. J. Biol. Chem., 273, 14398 14402.
12. Nechtelberger D., Pires V., Sölkner J., Stur I., Brem G., Mueller M., Mueller S. 2001 Intramuscular fat content and genetic variants at fatty acid-binding protein loci in Austrian pigs. J. Anim. Sci., 79, 2798 2804.
13. Nishizawa H., Yamagata K., Shimomura I., Takahashi M., Kuriyama H., Kishida K., Hotta K., Nagaretani H., Maeda N., Matsuda M., Kihara S., Nakamura T., Nishigori H., Tomura H., Moore D.D., Takeda J., Funuhashi T., Matsuzawa Y. 2002 Small heterodimer partner an orphan nuclear receptor, augments proxisome proliferator-activated receptor γ transactivation. J. Biol. Chem., 277, 1586 1592.
14. Òvilo C., Oliver A., Noguera J.L., Clop A., Barragan C., Varona L., Rodriguez C., Toro M., Sanchez A., Perez-Enciso M., Silio L. 2002 Test for positional candidate genes for body composition on pig chromosome 6. Genet. Sel. Evol., 34, 465 479.
15. SAS Institute Inc., SAS/STAT Software 1996 Changes and Enhancement through Release 6.11. SAS Institute Inc., Cary, NC.
16. Seol W., Choi H.S., Moore D.D. 1996 An orphan nuclear hormone receptor that lacks a DNA binding domain and heterodimerizes with other receptors. Science, 272, 1336 1339.
17. Stephens J.C., Schneider J.A., Tanguay D.A., Choi J., Acharya T., Stanely S.E., Jiang R., Messer C.J., Chew A., Han J-H., Duan J., Carr J.L., Lee M.S., Koshy B., Kumar A.M., Zhang D., Newell W.R., Windemuth A., Xu C., Kalbfleisch T.S., Shaner S.L., Arnold K., Shulz V., Drysdale C.M., Nandabalan K., Judson R.S., Ruano G., Vovis G.F. 2001 Haplotype variation and linkage disequilibrium in 313 human genes. Science, 293, 489 493.
18. Stulnig T.M., Steffensen K.R., Gao H., Reimers M., Dahlman-Wright K., Schuster G.U., Gustaffson J. 2002 Novel roles of liver X receptors exposed by gene expression profiling in liver and adipose tissue. Mol. Pharmacol., 62, 1299 1305.
19. Urban T., Mikolasova R., Kuciel J., Ernst M., Ingr I. 2002 A study of association of the FABP3 genotypes with fat and meat production of pigs. J. Appl. Genet., 43, 505 509.
20. Veerkamp J.H., Maatman R.G.H.J. 1995 Cytoplastic fatty acid biding proteins: Their structure and genes. Prog. Lipid Res., 34, 17 52.