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Volumn 22, Issue 3, 2006, Pages 381-383

REDfly: A Regulatory Element Database for Drosophila

Author keywords

[No Author keywords available]

Indexed keywords

REGULATOR PROTEIN;

EID: 32144456548     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti794     Document Type: Article
Times cited : (68)

References (19)
  • 1
    • 25444528967 scopus 로고    scopus 로고
    • Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: The fluffy-tail test
    • Abnizova,I. et al. (2005) Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: The fluffy-tail test. BMC Bioinformatics, 6, 109.
    • (2005) BMC Bioinformatics , vol.6 , pp. 109
    • Abnizova, I.1
  • 2
    • 17444402501 scopus 로고    scopus 로고
    • Drosophila DNase I footprint database: A systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster
    • Bergman,C.M. et al. (2005) Drosophila DNase I footprint database: A systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster. Bioinformatics, 21, 1747-1749.
    • (2005) Bioinformatics , vol.21 , pp. 1747-1749
    • Bergman, C.M.1
  • 3
    • 12744263842 scopus 로고    scopus 로고
    • Computational identification of developmental enhancers: Conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura
    • Berman,B.P. et al. (2004) Computational identification of developmental enhancers: Conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura. Genome Biol., 5, R61.
    • (2004) Genome Biol. , vol.5
    • Berman, B.P.1
  • 4
    • 0037498017 scopus 로고    scopus 로고
    • Turnover of binding sites for transcription factors involved in early Drosophila development
    • Costas,J. et al. (2003) Turnover of binding sites for transcription factors involved in early Drosophila development. Gene, 310, 215-220.
    • (2003) Gene , vol.310 , pp. 215-220
    • Costas, J.1
  • 5
    • 0035293755 scopus 로고    scopus 로고
    • Phenotypic data in FlyBase
    • Drysdale,R. (2001) Phenotypic data in FlyBase. Brief Bioinform., 2, 68-80.
    • (2001) Brief Bioinform. , vol.2 , pp. 68-80
    • Drysdale, R.1
  • 6
    • 13444301461 scopus 로고    scopus 로고
    • FlyBase: Genes and gene models
    • (Database issue)
    • Drysdale,R.A. et al. (2005) FlyBase: Genes and gene models. Nucleic Acids Res., 33 (Database issue), D390-D395.
    • (2005) Nucleic Acids Res. , vol.33
    • Drysdale, R.A.1
  • 7
    • 1642289044 scopus 로고    scopus 로고
    • Coordinate enhancers share common organizational features in the Drosophila genome
    • Erives,A. and Levine,M. (2004) Coordinate enhancers share common organizational features in the Drosophila genome. Proc. Natl Acad. Sci. USA, 101, 3851-3856.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 3851-3856
    • Erives, A.1    Levine, M.2
  • 8
    • 8844270153 scopus 로고    scopus 로고
    • Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura
    • Grad,Y.H. et al. (2004) Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura. Bioinformatics, 20, 2738-2750.
    • (2004) Bioinformatics , vol.20 , pp. 2738-2750
    • Grad, Y.H.1
  • 9
    • 18844396103 scopus 로고    scopus 로고
    • De novo cis-regulatory module elicitation for eukaryotic genomes
    • Gupta,M. and Liu,J.S. (2005) De novo cis-regulatory module elicitation for eukaryotic genomes. Proc. Natl Acad. Sci. USA, 102, 7079-7084.
    • (2005) Proc Natl Acad. Sci. USA , vol.102 , pp. 7079-7084
    • Gupta, M.1    Liu, J.S.2
  • 10
    • 0036079158 scopus 로고    scopus 로고
    • The human genome browser at UCSC
    • Kent,W.J. et al. (2002) The human genome browser at UCSC. Genome Res., 12, 996-1006.
    • (2002) Genome Res. , vol.12 , pp. 996-1006
    • Kent, W.J.1
  • 11
    • 0037398319 scopus 로고    scopus 로고
    • Homotypic regulatory clusters in Drosophila
    • Lifanov,A.P. et al. (2003) Homotypic regulatory clusters in Drosophila. Genome Res., 13, 579-588.
    • (2003) Genome Res. , vol.13 , pp. 579-588
    • Lifanov, A.P.1
  • 12
    • 0036122720 scopus 로고    scopus 로고
    • Extraction of functional binding sites from unique regulatory regions: The Drosophila early developmental enhancers
    • Papatsenko,D.A. et al. (2002) Extraction of functional binding sites from unique regulatory regions: The Drosophila early developmental enhancers. Genome Res., 12, 470-481.
    • (2002) Genome Res. , vol.12 , pp. 470-481
    • Papatsenko, D.A.1
  • 13
    • 15944423951 scopus 로고    scopus 로고
    • Modulefinder: A tool for computational discovery of cis regulatory modules
    • Philippakis,A.A. et al. (2005) Modulefinder: A tool for computational discovery of cis regulatory modules. Pac. Symp. Biocomput., 519-530.
    • (2005) Pac. Symp. Biocomput. , pp. 519-530
    • Philippakis, A.A.1
  • 14
    • 2942576308 scopus 로고    scopus 로고
    • Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo
    • Rajewsky,N. et al. (2002) Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo. BMC Bioinformatics, 3, 30.
    • (2002) BMC Bioinformatics , vol.3 , pp. 30
    • Rajewsky, N.1
  • 15
    • 19344375742 scopus 로고    scopus 로고
    • Transcriptional control in the segmentation gene network of Drosophila
    • Schroeder,M.D. et al. (2004) Transcriptional control in the segmentation gene network of Drosophila. PLoS Biol., 2, e271.
    • (2004) PLoS Biol. , vol.2
    • Schroeder, M.D.1
  • 16
    • 1642368138 scopus 로고    scopus 로고
    • Immunity regulatory DNAs share common organizational features in Drosophila
    • Senger,K. et al. (2004) Immunity regulatory DNAs share common organizational features in Drosophila. Mol. Cell, 13, 19-32.
    • (2004) Mol. Cell , vol.13 , pp. 19-32
    • Senger, K.1
  • 17
    • 18644378331 scopus 로고    scopus 로고
    • The generic genome browser: A building block for a model organism system database
    • Stein,L.D. et al. (2002) The generic genome browser: A building block for a model organism system database. Genome Res., 12, 1599-1610.
    • (2002) Genome Res. , vol.12 , pp. 1599-1610
    • Stein, L.D.1
  • 18
    • 0012252471 scopus 로고    scopus 로고
    • Systematic determination of patterns of gene expression during Drosophila embryogenesis
    • RESEARCH0088
    • Tomancak,P. et al. (2002) Systematic determination of patterns of gene expression during Drosophila embryogenesis. Genome Biol., 3 RESEARCH0088.
    • (2002) Genome Biol. , vol.3
    • Tomancak, P.1
  • 19
    • 4344607122 scopus 로고    scopus 로고
    • CisModule: De novo discovery of cis-regulatory modules by hierarchical mixture modeling
    • Zhou,Q. and Wong,W.H. (2004) CisModule: De novo discovery of cis-regulatory modules by hierarchical mixture modeling. Proc. Natl Acad. Sci. USA, 101. 12114-12119.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 12114-12119
    • Zhou, Q.1    Wong, W.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.