메뉴 건너뛰기




Volumn 177, Issue 3, 2007, Pages 1417-1428

Divergence between the Drosophila pseudoobscura and D. persimilis genome sequences in relation to chromosomal inversions

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CENTROMERE; CHROMOSOME INVERSION; DNA POLYMORPHISM; DROSOPHILA; GENE FLOW; GENE SEQUENCE; GENETIC VARIABILITY; NONHUMAN; PRIORITY JOURNAL; QUALITY CONTROL;

EID: 37249004679     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.107.070672     Document Type: Article
Times cited : (89)

References (52)
  • 2
    • 0002738351 scopus 로고
    • Evidence for and implications of genetic hitchhiking in the Drosophila genome
    • Sinauer Associates, Sunderland, MA
    • AQUADRO, C. F., and D. J. BEGUN, 1993 Evidence for and implications of genetic hitchhiking in the Drosophila genome, pp. 159-178 in Mechanisms of Molecular Evolution. Sinauer Associates, Sunderland, MA.
    • (1993) Mechanisms of Molecular Evolution , pp. 159-178
    • AQUADRO, C.F.1    BEGUN, D.J.2
  • 3
    • 0026007855 scopus 로고
    • Molecular evolution of inversions in Drosophila pseudoobscura: The amylase gene region
    • AQUADRO, C. F., A. L. WEAVER, S. W. SCHAEFFER and W. W. ANDERSON, 1991 Molecular evolution of inversions in Drosophila pseudoobscura: the amylase gene region. Proc. Natl. Acad. Sci. USA 88: 305-309.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 305-309
    • AQUADRO, C.F.1    WEAVER, A.L.2    SCHAEFFER, S.W.3    ANDERSON, W.W.4
  • 4
    • 18244405064 scopus 로고    scopus 로고
    • Chromosome speciation: Humans, Drosophila, and mosquitoes
    • AYALA, F. J., and M. COLUZZI, 2005 Chromosome speciation: humans, Drosophila, and mosquitoes. Proc. Natl. Acad. Sci. USA 102: 6535-6542.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 6535-6542
    • AYALA, F.J.1    COLUZZI, M.2
  • 5
    • 33750594635 scopus 로고    scopus 로고
    • Restricted gene flow at specific parts of the shrew genome in chromosomal hybrid zones
    • BASSET, P., G. YANNIC, H. BRUNNER and J. HAUSSER, 2006 Restricted gene flow at specific parts of the shrew genome in chromosomal hybrid zones. Evolution 60: 1718-1730.
    • (2006) Evolution , vol.60 , pp. 1718-1730
    • BASSET, P.1    YANNIC, G.2    BRUNNER, H.3    HAUSSER, J.4
  • 6
    • 0026529344 scopus 로고
    • Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster
    • BEGUN, D. J., and C. F. AQUADRO, 1992 Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356: 519-520.
    • (1992) Nature , vol.356 , pp. 519-520
    • BEGUN, D.J.1    AQUADRO, C.F.2
  • 8
    • 34250174751 scopus 로고    scopus 로고
    • Techniques for multi-genome synteny analysis to overcome assembly limitations
    • BHUTKAR, A., S. RUSSO, T. F. SMITH and W. M. GELBART, 2006 Techniques for multi-genome synteny analysis to overcome assembly limitations. Genome Inform. 17: 152-161.
    • (2006) Genome Inform , vol.17 , pp. 152-161
    • BHUTKAR, A.1    RUSSO, S.2    SMITH, T.F.3    GELBART, W.M.4
  • 9
    • 1542748076 scopus 로고    scopus 로고
    • BLANCHETTE, M., W. J. KENT, C. RIEMER, L. ELNITSKI, A. F. SMIT et al., 2004 Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res. 14: 708-715.
    • BLANCHETTE, M., W. J. KENT, C. RIEMER, L. ELNITSKI, A. F. SMIT et al., 2004 Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res. 14: 708-715.
  • 10
    • 1842667852 scopus 로고    scopus 로고
    • MAVID: Constrained ancestral alignment of multiple sequences
    • BRAY, N., and L. PACHTER, 2004 MAVID: constrained ancestral alignment of multiple sequences. Genome Res. 14: 693-699.
    • (2004) Genome Res , vol.14 , pp. 693-699
    • BRAY, N.1    PACHTER, L.2
  • 11
    • 4344697380 scopus 로고    scopus 로고
    • A test of the chromosomal rearrangement model of speciation in Drosophila pseudoobscura
    • BROWN, K. M., L. M. BURK, L. M. HENAGAN and M. A. F. NOOR, 2004 A test of the chromosomal rearrangement model of speciation in Drosophila pseudoobscura. Evolution 58: 1856-1860.
    • (2004) Evolution , vol.58 , pp. 1856-1860
    • BROWN, K.M.1    BURK, L.M.2    HENAGAN, L.M.3    NOOR, M.A.F.4
  • 12
    • 24744452988 scopus 로고    scopus 로고
    • Recombination and speciation
    • BUTLIN, R. K., 2005 Recombination and speciation. Mol. Ecol. 14: 2621-2635.
    • (2005) Mol. Ecol , vol.14 , pp. 2621-2635
    • BUTLIN, R.K.1
  • 13
    • 0000124355 scopus 로고
    • Is there gene exchange between Drosophila pseudoobscura and Drosophila persimilis in their natural habitats?
    • DOBZHANSKY, T., 1973 Is there gene exchange between Drosophila pseudoobscura and Drosophila persimilis in their natural habitats? Am. Nat. 107: 312-314.
    • (1973) Am. Nat , vol.107 , pp. 312-314
    • DOBZHANSKY, T.1
  • 15
    • 0002835359 scopus 로고
    • Inversions in the chromosomes of Drosophila pseudoobscura
    • DOBZHANSKY, T., and A. H. STURTEVANT, 1938 Inversions in the chromosomes of Drosophila pseudoobscura. Genetics 23: 28-64.
    • (1938) Genetics , vol.23 , pp. 28-64
    • DOBZHANSKY, T.1    STURTEVANT, A.H.2
  • 16
    • 34347165959 scopus 로고
    • Studies of hybrid sterility. III. A comparison of the gene arrangement in two species, Drosophila pseudoobscura and Drosophila miranda
    • DOBZHANSKY, T., and C. C. TAN, 1936 Studies of hybrid sterility. III. A comparison of the gene arrangement in two species, Drosophila pseudoobscura and Drosophila miranda. Zeit. Induk. Abst. Verer. 72: 88-114.
    • (1936) Zeit. Induk. Abst. Verer , vol.72 , pp. 88-114
    • DOBZHANSKY, T.1    TAN, C.C.2
  • 17
    • 0037356366 scopus 로고    scopus 로고
    • Evidence of inversion polymorphism related to sympatric host race formation in the apple maggot fly, Rhagoletis pomonella
    • FEDER, J. L., J. B. ROETHELE, K. FILCHAK, J. NIEDBALSKI and J. ROMERO-SEVERSON, 2003 Evidence of inversion polymorphism related to sympatric host race formation in the apple maggot fly, Rhagoletis pomonella. Genetics 163: 939-953.
    • (2003) Genetics , vol.163 , pp. 939-953
    • FEDER, J.L.1    ROETHELE, J.B.2    FILCHAK, K.3    NIEDBALSKI, J.4    ROMERO-SEVERSON, J.5
  • 18
    • 37249018708 scopus 로고    scopus 로고
    • public database of Drosophila species genomes
    • GILBERT, D. G., 2005 DroSpeGe, a public database of Drosophila species genomes. (http://insects.eugenes.org/DroSpeGe/).
    • (2005) DroSpeGe, a
    • GILBERT, D.G.1
  • 19
    • 0032862461 scopus 로고    scopus 로고
    • DNA sequence variation and the recombinational landscape in Drosophila pseudoobscura: A study of the second chromosome
    • HAMBLIN, M. T., and C. F. AQUADRO, 1999 DNA sequence variation and the recombinational landscape in Drosophila pseudoobscura: a study of the second chromosome. Genetics 153: 859-869.
    • (1999) Genetics , vol.153 , pp. 859-869
    • HAMBLIN, M.T.1    AQUADRO, C.F.2
  • 21
    • 33744466839 scopus 로고    scopus 로고
    • Chromosome inversions, local adaptation and speciation
    • KIRKPATRICK, M., and N. BARTON, 2006 Chromosome inversions, local adaptation and speciation. Genetics 173: 419-434.
    • (2006) Genetics , vol.173 , pp. 419-434
    • KIRKPATRICK, M.1    BARTON, N.2
  • 22
    • 0004049540 scopus 로고
    • LEWONTIN, R. C, J. A. MOORE, W. B. PROVINE and B. WALLACE Editors, Columbia University Press, New York
    • LEWONTIN, R. C., J. A. MOORE, W. B. PROVINE and B. WALLACE (Editors), 1981 Dobzhansky's Genetics of Natural Populations I-XLIII. Columbia University Press, New York.
    • (1981) Dobzhansky's Genetics of Natural Populations I-XLIII
  • 23
    • 0037565090 scopus 로고    scopus 로고
    • The causes of phylogenetic conflict in a classic Drosophila species group
    • MACHADO, C. A., and J. HEY, 2003 The causes of phylogenetic conflict in a classic Drosophila species group. Proc. R. Soc. Lond. Ser. B 270: 1193-1202.
    • (2003) Proc. R. Soc. Lond. Ser. B , vol.270 , pp. 1193-1202
    • MACHADO, C.A.1    HEY, J.2
  • 24
    • 0036215045 scopus 로고    scopus 로고
    • Inferring the history of speciation from multilocus sequence data: The case of Drosophila pseudoobscura and its close relatives
    • MACHADO, C. A., R. M. KLIMAN, J. A. MARKERT and J. HEY, 2002 Inferring the history of speciation from multilocus sequence data: the case of Drosophila pseudoobscura and its close relatives. Mol. Biol. Evol. 19: 472-488.
    • (2002) Mol. Biol. Evol , vol.19 , pp. 472-488
    • MACHADO, C.A.1    KLIMAN, R.M.2    MARKERT, J.A.3    HEY, J.4
  • 25
    • 34249074723 scopus 로고    scopus 로고
    • Evaluation of the genomic extent of effects of fixed inversion differences on intraspecific variation and interspecific gene flow in Drosophila pseudoobscura and D. persimilis
    • MACHADO, C. A., T. S. HASELKORN and M. A. F. NOOR, 2007 Evaluation of the genomic extent of effects of fixed inversion differences on intraspecific variation and interspecific gene flow in Drosophila pseudoobscura and D. persimilis. Genetics 175: 1289-1306.
    • (2007) Genetics , vol.175 , pp. 1289-1306
    • MACHADO, C.A.1    HASELKORN, T.S.2    NOOR, M.A.F.3
  • 26
    • 0028975790 scopus 로고
    • A species definition for the modern synthesis
    • MALLET, J., 1995 A species definition for the modern synthesis. Trends Ecol. Evol. 10: 294-299.
    • (1995) Trends Ecol. Evol , vol.10 , pp. 294-299
    • MALLET, J.1
  • 27
    • 0002084648 scopus 로고
    • Bearings of the Drosophila work on systematics
    • edited by J. Huxley. Clarendon Press, Oxford
    • MULLER, H. J., 1940 Bearings of the Drosophila work on systematics, pp. 185-268 in New Systematics, edited by J. Huxley. Clarendon Press, Oxford.
    • (1940) New Systematics , pp. 185-268
    • MULLER, H.J.1
  • 28
    • 0030071554 scopus 로고    scopus 로고
    • Heterogeneity in rates of recombination across the mouse genome
    • NACHMAN, M. W., and G. A. CHURCHILL, 1996 Heterogeneity in rates of recombination across the mouse genome. Genetics 142: 537-548.
    • (1996) Genetics , vol.142 , pp. 537-548
    • NACHMAN, M.W.1    CHURCHILL, G.A.2
  • 29
    • 0037358721 scopus 로고    scopus 로고
    • Accumulating postzygotic isolation in parapatry: A new twist on chromosomal speciation
    • NAVARRO, A., and N. H. BARTON, 2003 Accumulating postzygotic isolation in parapatry: a new twist on chromosomal speciation. Evolution 57: 447-459.
    • (2003) Evolution , vol.57 , pp. 447-459
    • NAVARRO, A.1    BARTON, N.H.2
  • 30
    • 0030951291 scopus 로고    scopus 로고
    • Recombination and gene flux caused by gene conversion and crossing over in inversion heterokaryotypes
    • NAVARRO, A., E. BETRAN, A. BARBADILLA and A. RUIZ, 1997 Recombination and gene flux caused by gene conversion and crossing over in inversion heterokaryotypes. Genetics 146: 695-709.
    • (1997) Genetics , vol.146 , pp. 695-709
    • NAVARRO, A.1    BETRAN, E.2    BARBADILLA, A.3    RUIZ, A.4
  • 31
    • 0034096314 scopus 로고    scopus 로고
    • Effect of inversion polymorphism on the neutral nucleotide variability of linked chromosomal regions in Drosophila
    • NAVARRO, A., A. BARBADILLA and A. RUIZ, 2000 Effect of inversion polymorphism on the neutral nucleotide variability of linked chromosomal regions in Drosophila. Genetics 155: 685-698.
    • (2000) Genetics , vol.155 , pp. 685-698
    • NAVARRO, A.1    BARBADILLA, A.2    RUIZ, A.3
  • 32
    • 33750219172 scopus 로고    scopus 로고
    • Speciation genetics: Evolving approaches
    • NOOR, M. A. F., and J. L. FEDER, 2006 Speciation genetics: evolving approaches. Nat. Rev. Genet. 7: 851-861.
    • (2006) Nat. Rev. Genet , vol.7 , pp. 851-861
    • NOOR, M.A.F.1    FEDER, J.L.2
  • 33
    • 0029804107 scopus 로고    scopus 로고
    • Genetics of a difference in cuticular hydrocarbons between Drosophila pseudoobscura and D. persimilis
    • NOOR, M. A. F., and J. A. COYNE, 1996 Genetics of a difference in cuticular hydrocarbons between Drosophila pseudoobscura and D. persimilis. Genet. Res. 68: 117-123.
    • (1996) Genet. Res , vol.68 , pp. 117-123
    • NOOR, M.A.F.1    COYNE, J.A.2
  • 34
    • 0034923452 scopus 로고    scopus 로고
    • The genetics of reproductive isolation and the potential for gene exchange between Drosophila pseudoobscura and D. persimilis via backcross hybrid males
    • NOOR, M. A. F., K. L. GRAMS, L. A. BERTUCCI, Y. ALMENDAREZ, J. REILAND et al., 2001a The genetics of reproductive isolation and the potential for gene exchange between Drosophila pseudoobscura and D. persimilis via backcross hybrid males. Evolution 55: 512-521.
    • (2001) Evolution , vol.55 , pp. 512-521
    • NOOR, M.A.F.1    GRAMS, K.L.2    BERTUCCI, L.A.3    ALMENDAREZ, Y.4    REILAND, J.5
  • 36
    • 33845597141 scopus 로고    scopus 로고
    • Contrasting patterns of sequence divergence and base composition between Drosophila introns and intergenic regions
    • OMETTO, L., D. DELORENZO and W. STEPHAN, 2006 Contrasting patterns of sequence divergence and base composition between Drosophila introns and intergenic regions. Biol. Lett. 2: 604-607.
    • (2006) Biol. Lett , vol.2 , pp. 604-607
    • OMETTO, L.1    DELORENZO, D.2    STEPHAN, W.3
  • 37
    • 0036873647 scopus 로고    scopus 로고
    • Recombination and the divergence of hybridizing species
    • ORTIZ-BARRIENTOS, D., J. REILAND, J. HEY and M. A. F. NOOR, 2002 Recombination and the divergence of hybridizing species. Genetica 116: 167-178.
    • (2002) Genetica , vol.116 , pp. 167-178
    • ORTIZ-BARRIENTOS, D.1    REILAND, J.2    HEY, J.3    NOOR, M.A.F.4
  • 38
    • 33644944137 scopus 로고    scopus 로고
    • A recombinational portrait of the Drosophila pseudoobscura genome
    • ORTIZ-BARRIENTOS, D., A. S. CHANG and M. A. F. NOOR, 2006 A recombinational portrait of the Drosophila pseudoobscura genome. Genet. Res. 87: 23-31.
    • (2006) Genet. Res , vol.87 , pp. 23-31
    • ORTIZ-BARRIENTOS, D.1    CHANG, A.S.2    NOOR, M.A.F.3
  • 39
    • 1642315591 scopus 로고    scopus 로고
    • Linkage-dependent gene flow in a house mouse chromosomal hybrid zone
    • PANITHANARAK, T., H. C. HAUFFE, J. F. DALLAS, A. GLOVER, R. G. WARD et al., 2004 Linkage-dependent gene flow in a house mouse chromosomal hybrid zone. Evolution 58: 184-192.
    • (2004) Evolution , vol.58 , pp. 184-192
    • PANITHANARAK, T.1    HAUFFE, H.C.2    DALLAS, J.F.3    GLOVER, A.4    WARD, R.G.5
  • 40
    • 33745591114 scopus 로고    scopus 로고
    • Genetic evidence for complex speciation of humans and chimpanzees
    • PATTERSON, N., D. J. RICHTER, S. GNERRE, E. S. LANDER and D. REICH, 2006 Genetic evidence for complex speciation of humans and chimpanzees. Nature 441: 1103-1108.
    • (2006) Nature , vol.441 , pp. 1103-1108
    • PATTERSON, N.1    RICHTER, D.J.2    GNERRE, S.3    LANDER, E.S.4    REICH, D.5
  • 41
    • 33750204634 scopus 로고    scopus 로고
    • Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments
    • POLLARD, D. A., A. M. MOSES, V. N. IYER and M. B. EISEN, 2006 Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments. BMC Bioinformatics 7: 376.
    • (2006) BMC Bioinformatics , vol.7 , pp. 376
    • POLLARD, D.A.1    MOSES, A.M.2    IYER, V.N.3    EISEN, M.B.4
  • 42
    • 0020652396 scopus 로고
    • Interspecific cytoplasmic gene flow in the absence of nuclear gene flow: Evidence from Drosophila
    • POWELL, J. R., 1983 Interspecific cytoplasmic gene flow in the absence of nuclear gene flow: evidence from Drosophila. Proc. Natl. Acad. Sci. USA 80: 492-495.
    • (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 492-495
    • POWELL, J.R.1
  • 43
    • 85135545317 scopus 로고    scopus 로고
    • QUESNEVILLE, H., C. M. BERGMAN, O. ANDRIEU, D. AUTARD, D. NOUAUD et al., 2005 Combined evidence annotation of transposable elements in genome sequences. PLoS Comput. Biol. 1: 166-175.
    • QUESNEVILLE, H., C. M. BERGMAN, O. ANDRIEU, D. AUTARD, D. NOUAUD et al., 2005 Combined evidence annotation of transposable elements in genome sequences. PLoS Comput. Biol. 1: 166-175.
  • 44
    • 19944434180 scopus 로고    scopus 로고
    • Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution
    • RICHARDS, S., Y. LIU, B. R. BETTENCOURT, P. HRADECKY, S. LETOVSKY et al., 2005 Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Res. 15: 1-18.
    • (2005) Genome Res , vol.15 , pp. 1-18
    • RICHARDS, S.1    LIU, Y.2    BETTENCOURT, B.R.3    HRADECKY, P.4    LETOVSKY, S.5
  • 45
    • 0035400605 scopus 로고    scopus 로고
    • Chromosomal rearrangements and speciation
    • RIESEBERG, L. H., 2001 Chromosomal rearrangements and speciation. Trends Ecol. Evol. 16: 351-358.
    • (2001) Trends Ecol. Evol , vol.16 , pp. 351-358
    • RIESEBERG, L.H.1
  • 46
    • 0032979319 scopus 로고    scopus 로고
    • Hybrid zones and the genetic architecture of a barrier to gene flow between two sunflower species
    • RIESEBERG, L. H., J. WHITTON and K. GARDNER, 1999 Hybrid zones and the genetic architecture of a barrier to gene flow between two sunflower species. Genetics 152: 713-727.
    • (1999) Genetics , vol.152 , pp. 713-727
    • RIESEBERG, L.H.1    WHITTON, J.2    GARDNER, K.3
  • 47
    • 33645118025 scopus 로고    scopus 로고
    • Mechanisms of genetic exchange within the chromosomal inversions of Drosophila pseudoobscura
    • SCHAEFFER, S. W., and W. W. ANDERSON, 2005 Mechanisms of genetic exchange within the chromosomal inversions of Drosophila pseudoobscura. Genetics 171: 1729-1739.
    • (2005) Genetics , vol.171 , pp. 1729-1739
    • SCHAEFFER, S.W.1    ANDERSON, W.W.2
  • 49
    • 0028789984 scopus 로고
    • P1 clones from Drosophila melanogaster as markers to study the chromosomal evolution of Muller's A element in two species of the obscura group of Drosophila
    • SEGARRA, C., E. R. LOZOVSKAYA, G. RIBO, M. AGUADE and D. L. HARTL, 1995 P1 clones from Drosophila melanogaster as markers to study the chromosomal evolution of Muller's A element in two species of the obscura group of Drosophila. Chromosoma 104: 129-136.
    • (1995) Chromosoma , vol.104 , pp. 129-136
    • SEGARRA, C.1    LOZOVSKAYA, E.R.2    RIBO, G.3    AGUADE, M.4    HARTL, D.L.5
  • 51
    • 10844274729 scopus 로고    scopus 로고
    • Evolutionary expressed sequence tag analysis of Drosophila female reproductive tracts identifies genes subjected to positive selection
    • SWANSON, W. J., A. WONG, M. F. WOLFNER and C. F. AQUADRO, 2004 Evolutionary expressed sequence tag analysis of Drosophila female reproductive tracts identifies genes subjected to positive selection. Genetics 168: 1457-1465.
    • (2004) Genetics , vol.168 , pp. 1457-1465
    • SWANSON, W.J.1    WONG, A.2    WOLFNER, M.F.3    AQUADRO, C.F.4
  • 52
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • YANG, Z., 1997 PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556.
    • (1997) Comput. Appl. Biosci , vol.13 , pp. 555-556
    • YANG, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.