-
1
-
-
0028797897
-
Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA
-
AKASHI, H., 1995 Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA. Genetics 139: 1067-1076.
-
(1995)
Genetics
, vol.139
, pp. 1067-1076
-
-
Akashi, H.1
-
2
-
-
0029985179
-
Molecular evolution between Drosophila melanogaster and D. simulans, reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster
-
AKASHI, H., 1996 Molecular evolution between Drosophila melanogaster and D. simulans, reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster. Genetics 144: 1297-1307.
-
(1996)
Genetics
, vol.144
, pp. 1297-1307
-
-
Akashi, H.1
-
3
-
-
0032953881
-
Inferring the fitness effects of DNA mutations from polymorphism and divergence data: Statistical power to detect directional selection under stationarity and free recombination
-
AKASHI, H., 1999 Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free recombination. Genetics 151: 221-238.
-
(1999)
Genetics
, vol.151
, pp. 221-238
-
-
Akashi, H.1
-
4
-
-
0035107550
-
Contrasting patterns of X-linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans
-
ANDOLFATTO, P., 2001 Contrasting patterns of X-linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans. Mol. Biol. Evol. 18: 279-290.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 279-290
-
-
Andolfatto, P.1
-
5
-
-
0001866374
-
Selection, recombination, and DNA polymorphism in Drosophila
-
edited by B. Golding. Chapman & Hall, New York
-
AQUADRO, C. F., D. J. BEGUN and E. C. KINDAHL, 1994 Selection, recombination, and DNA polymorphism in Drosophila, pp. 46-56 in Non-Neutral Evolution: Theories and Molecular Data, edited by B. GOLDING. Chapman & Hall, New York.
-
(1994)
Non-Neutral Evolution: Theories and Molecular Data
, pp. 46-56
-
-
Aquadro, C.F.1
Begun, D.J.2
Kindahl, E.C.3
-
6
-
-
0030817264
-
Rates of DNA sequence evolution are not sex-biased in Drosophila melanogaster and D. simulans
-
BAUER, V. L., and C. F. AQUADRO, 1997 Rates of DNA sequence evolution are not sex-biased in Drosophila melanogaster and D. simulans. Mol. Biol. Evol. 14: 1252-1257.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 1252-1257
-
-
Bauer, V.L.1
Aquadro, C.F.2
-
7
-
-
0034938613
-
The frequency distribution of nucleotide variation in Drosophila simulans
-
BEGUN, D. J., 2001 The frequency distribution of nucleotide variation in Drosophila simulans. Mol. Biol. Evol. 18: 1343-1352.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1343-1352
-
-
Begun, D.J.1
-
8
-
-
0036149744
-
Protein variation in Drosophila simulans, and comparison of genes from centromeric versus noncentromeric regions of chromosome 3
-
BEGUN, D. J., 2002 Protein variation in Drosophila simulans, and comparison of genes from centromeric versus noncentromeric regions of chromosome 3. Mol. Biol. Evol. 19: 201-203.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 201-203
-
-
Begun, D.J.1
-
9
-
-
0026529344
-
Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster
-
BEGUN, D. J., and C. F. AQUADRO, 1992 Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356: 519-520.
-
(1992)
Nature
, vol.356
, pp. 519-520
-
-
Begun, D.J.1
Aquadro, C.F.2
-
10
-
-
0034048632
-
Adaptive evolution of Relish, a Drosophila NF-κB/IκB protein
-
BEGUN, D. J., and P. WHITLEY, 2000a Adaptive evolution of Relish, a Drosophila NF-κB/IκB protein. Genetics 154: 1231-1238.
-
(2000)
Genetics
, vol.154
, pp. 1231-1238
-
-
Begun, D.J.1
Whitley, P.2
-
11
-
-
0034705169
-
Reduced X-linked nuelcotide polymorphism in Drosophila simulans
-
BEGUN, D. J., and P. WHITLEY, 2000b Reduced X-linked nuelcotide polymorphism in Drosophila simulans. Proc. Natl. Acad. Sci. USA 97: 5960-5965.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 5960-5965
-
-
Begun, D.J.1
Whitley, P.2
-
12
-
-
0029730738
-
A conserved signaling pathway: The Drosophila toll-dorsal pathway
-
BELVIN, M. P., and K. V. ANDERSON, 1996 A conserved signaling pathway: the Drosophila toll-dorsal pathway. Annu. Rev. Cell Dev. Biol. 12: 393-416.
-
(1996)
Annu. Rev. Cell Dev. Biol.
, vol.12
, pp. 393-416
-
-
Belvin, M.P.1
Anderson, K.V.2
-
13
-
-
0034625046
-
Rapid evolution in plant chitinases: Molecular targets of selection in plant-pathogen coevolution
-
BISHOP, J. G., A. M. DEAN and T. MITCHELL-OLDS, 2000 Rapid evolution in plant chitinases: molecular targets of selection in plant-pathogen coevolution. Proc. Natl. Acad. Sci. USA 97: 5322-5327.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 5322-5327
-
-
Bishop, J.G.1
Dean, A.M.2
Mitchell-Olds, T.3
-
14
-
-
0029036829
-
The hitchhiking effect on the site frequency spectrum of DNA polymorphisms
-
BRAVERMAN, J. M., R. R. HUDSON, N. L. KAPLAN, C. H. LANGLEY and W. STEPHAN, 1995 The hitchhiking effect on the site frequency spectrum of DNA polymorphisms. Genetics 140: 783-796.
-
(1995)
Genetics
, vol.140
, pp. 783-796
-
-
Braverman, J.M.1
Hudson, R.R.2
Kaplan, N.L.3
Langley, C.H.4
Stephan, W.5
-
15
-
-
84993842127
-
Are codon usage patterns in unicellular organisms determined by selection-mutation balance?
-
BULMER, M., 1988 Are codon usage patterns in unicellular organisms determined by selection-mutation balance? J. Evol. Biol. 1: 15-26.
-
(1988)
J. Evol. Biol.
, vol.1
, pp. 15-26
-
-
Bulmer, M.1
-
16
-
-
0027305597
-
The effect of deleterious mutations on neutral molecular variation
-
CHARLESWORTH, B., M. T. MORGAN and D. CHARLESWORTH, 1993 The effect of deleterious mutations on neutral molecular variation. Genetics 134: 1289-1303.
-
(1993)
Genetics
, vol.134
, pp. 1289-1303
-
-
Charlesworth, B.1
Morgan, M.T.2
Charlesworth, D.3
-
17
-
-
0030882665
-
Molecular population genetics of Drosophila immune system genes
-
CLARK, A. G., and L. WANG, 1997 Molecular population genetics of Drosophila immune system genes. Genetics 147: 713-724.
-
(1997)
Genetics
, vol.147
, pp. 713-724
-
-
Clark, A.G.1
Wang, L.2
-
18
-
-
0031958874
-
Evolutionary history and mechanism of the Drosophila cecropin gene family
-
DATE, A.,Y. SATTA, N. TAKAHATA and S. I. CHIGUSA, 1998 Evolutionary history and mechanism of the Drosophila cecropin gene family. Immunogenetics 47: 417-429.
-
(1998)
Immunogenetics
, vol.47
, pp. 417-429
-
-
Date, A.1
Satta, Y.2
Takahata, N.3
Chigusa, S.I.4
-
20
-
-
0033911640
-
Hitchhiking under positive Darwinian selection
-
FAY, J. C., and C.-I WU, 2000 Hitchhiking under positive Darwinian selection. Genetics 155: 1405-1413.
-
(2000)
Genetics
, vol.155
, pp. 1405-1413
-
-
Fay, J.C.1
Wu, C.-I.2
-
21
-
-
0037186608
-
Testing the neutral theory of molecular evolution with genomic data from Drosophila
-
FAY, J. C., G. J. WYCKOFF and C.-I. WU, 2002 Testing the neutral theory of molecular evolution with genomic data from Drosophila. Nature 415: 1024-1026.
-
(2002)
Nature
, vol.415
, pp. 1024-1026
-
-
Fay, J.C.1
Wyckoff, G.J.2
Wu, C.-I.3
-
22
-
-
0031593206
-
Junk ain't what junk does: Neutral alleles in a selected context
-
GILLESPIE, J. H., 1997 Junk ain't what junk does: neutral alleles in a selected context. Gene 205: 291-299.
-
(1997)
Gene
, vol.205
, pp. 291-299
-
-
Gillespie, J.H.1
-
23
-
-
0033117745
-
The role of population size in molecular evolution
-
GILLESPIE, J. H., 1999 The role of population size in molecular evolution. Theor. Popul. Biol. 55: 145-156.
-
(1999)
Theor. Popul. Biol.
, vol.55
, pp. 145-156
-
-
Gillespie, J.H.1
-
24
-
-
0031843062
-
Nucleotide variation in the triosephosphate isomerase (Tpi) locus of Drosophila melanogaster and Drosophila simulans
-
HASSON, E., I. N. WANG, L. W. ZENG, M. KREITMAN and W. F. EANES, 1998 Nucleotide variation in the triosephosphate isomerase (Tpi) locus of Drosophila melanogaster and Drosophila simulans. Mol. Biol. Evol. 15: 756-769.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 756-769
-
-
Hasson, E.1
Wang, I.N.2
Zeng, L.W.3
Kreitman, M.4
Eanes, W.F.5
-
25
-
-
0031864184
-
Type III protein secretion systems in bacterial pathogens of animals and plants
-
HUECK, C.J., 1998 Type III protein secretion systems in bacterial pathogens of animals and plants. Microbiol. Mol. Biol. Rev. 62: 379-433.
-
(1998)
Microbiol. Mol. Biol. Rev.
, vol.62
, pp. 379-433
-
-
Hueck, C.J.1
-
26
-
-
0023764283
-
Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection
-
HUGHES, A. L., and M. NEI, 1988 Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335: 167-170.
-
(1988)
Nature
, vol.335
, pp. 167-170
-
-
Hughes, A.L.1
Nei, M.2
-
27
-
-
0040771786
-
Nucleotide substitution at major histocompatibility complex class II loci: Evidence for overdominant selection
-
HUGHES, A. L., and M. NEI, 1989 Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection. Proc. Natl. Acad. Sci. USA 86: 958-962.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 958-962
-
-
Hughes, A.L.1
Nei, M.2
-
28
-
-
0025147562
-
Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules
-
HUGHES, A. L., T. OTA and M. NEI, 1990 Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules. Mol. Biol. Evol. 7: 515-524.
-
(1990)
Mol. Biol. Evol.
, vol.7
, pp. 515-524
-
-
Hughes, A.L.1
Ota, T.2
Nei, M.3
-
29
-
-
0024372736
-
The "hitch-hiking" effect revisited
-
KAPLAN, N. L., R. R. HUDSON and C. H. LANGLEY, 1989 The "hitch-hiking" effect revisited. Genetics 123: 887-899.
-
(1989)
Genetics
, vol.123
, pp. 887-899
-
-
Kaplan, N.L.1
Hudson, R.R.2
Langley, C.H.3
-
30
-
-
0035321067
-
The evolution and genetics of innate immunity
-
KIMBRELL, D. A., and B. BEUTLER, 2001 The evolution and genetics of innate immunity. Nat. Rev. Genet. 2: 256-267.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 256-267
-
-
Kimbrell, D.A.1
Beutler, B.2
-
32
-
-
0027389296
-
DNA sequence variation at the period locus within and among species of the Drosophila melanogaster complex
-
KLIMAN, R. M., and J. HEY, 1993 DNA sequence variation at the period locus within and among species of the Drosophila melanogaster complex. Genetics 133: 375-387.
-
(1993)
Genetics
, vol.133
, pp. 375-387
-
-
Kliman, R.M.1
Hey, J.2
-
33
-
-
0031446642
-
Drosophila host defense: Differential induction of antimicrobial peptide genes after infection by various classes of microorganisms
-
LEMAITRE, B., J.-M. REICHHART and J. A. HOFFMANN, 1997 Drosophila host defense: differential induction of antimicrobial peptide genes after infection by various classes of microorganisms. Proc. Natl. Acad. Sci. USA 94: 14614-14619.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 14614-14619
-
-
Lemaitre, B.1
Reichhart, J.-M.2
Hoffmann, J.A.3
-
34
-
-
0022005270
-
A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
-
LI, W. H., C. I. WU and C. C. LUO, 1985 A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol. Biol. Evol. 2: 150-174.
-
(1985)
Mol. Biol. Evol.
, vol.2
, pp. 150-174
-
-
Li, W.H.1
Wu, C.I.2
Luo, C.C.3
-
35
-
-
0016220238
-
The hitch-hiking effect of a favorable gene
-
MAYNARD-SMITH, J., and J. HAIGH, 1974 The hitch-hiking effect of a favorable gene. Genet. Res. 23: 23-35.
-
(1974)
Genet. Res.
, vol.23
, pp. 23-35
-
-
Maynard-Smith, J.1
Haigh, J.2
-
36
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
MCDONALD, J. M., and M. KREITMAN, 1991 Adaptive protein evolution at the Adh locus in Drosophila. Nature 351: 652-654.
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
Mcdonald, J.M.1
Kreitman, M.2
-
37
-
-
0027328291
-
Chloroplast DNA codon use: Evidence for selection at the psbA locus based on tRNA availability
-
MORTON, B. R., 1993 Chloroplast DNA codon use: evidence for selection at the psbA locus based on tRNA availability. J. Mol. Evol. 37: 273-280.
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 273-280
-
-
Morton, B.R.1
-
38
-
-
0027514171
-
Molecular mimicry and the generation of host defense protein diversity
-
MURPHY, P. M., 1993 Molecular mimicry and the generation of host defense protein diversity. Cell 72: 823-826.
-
(1993)
Cell
, vol.72
, pp. 823-826
-
-
Murphy, P.M.1
-
40
-
-
0018729801
-
Comparative studies of allozyme loci in Drosophila simulans and D. melanogaster. II. Gene arrangement on the 3rd chromosome
-
OHNISHI, S., and R. A. VOELKER, 1979 Comparative studies of allozyme loci in Drosophila simulans and D. melanogaster. II. Gene arrangement on the 3rd chromosome. Jpn. J. Genet. 54: 203-209.
-
(1979)
Jpn. J. Genet.
, vol.54
, pp. 203-209
-
-
Ohnishi, S.1
Voelker, R.A.2
-
41
-
-
0036196885
-
The signature of positive selection at randomly chosen loci
-
PRZEWORSKI, M. 2002 The signature of positive selection at randomly chosen loci. Genetics 160: 1179-1189.
-
(2002)
Genetics
, vol.160
, pp. 1179-1189
-
-
Przeworski, M.1
-
42
-
-
0031696837
-
Molecular evolution of the cecropin multigene family in Drosophila: Functional genes vs. pseudogenes
-
RAMOS-ONSINS, S., and M. AGUADÉ, 1998 Molecular evolution of the cecropin multigene family in Drosophila: functional genes vs. pseudogenes. Genetics 150:157-171.
-
(1998)
Genetics
, vol.150
, pp. 157-171
-
-
Ramos-Onsins, S.1
Aguadé, M.2
-
43
-
-
0032972599
-
DnaSP 3: An integrated program for molecular population genetics and molecular evolution analysis
-
ROZAS, J., and R. ROZAS, 1999 DnaSP 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
-
(1999)
Bioinformatics
, vol.15
, pp. 174-175
-
-
Rozas, J.1
Rozas, R.2
-
44
-
-
0031775572
-
The yopJ locus is required for Yersinia-mediated inhibition of NF-kappaB activation and cytokine expression: YopJ contains a eukaryotic SH2-like domain that is essential for its repressive activity
-
SCHESSER, K., A. K. SPIIK, J. M. DUKUZUMUREMYI, M. F. NEURATH, S. PETTERSSON et al., 1998 The yopJ locus is required for Yersinia-mediated inhibition of NF-kappaB activation and cytokine expression: YopJ contains a eukaryotic SH2-like domain that is essential for its repressive activity. Mol. Microbiol. 28: 1067-1079.
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 1067-1079
-
-
Schesser, K.1
Spiik, A.K.2
Dukuzumuremyi, J.M.3
Neurath, M.F.4
Pettersson, S.5
-
45
-
-
0022856787
-
An evolutionary perspective on synonymous codon usage in unicellular organisms
-
SHARP, P. M., and W.-H. LI, 1986 An evolutionary perspective on synonymous codon usage in unicellular organisms. J. Mol. Evol. 24: 28-38.
-
(1986)
J. Mol. Evol.
, vol.24
, pp. 28-38
-
-
Sharp, P.M.1
Li, W.-H.2
-
46
-
-
0035883151
-
NF-κB signaling pathways in mammalian and insect innate immunity
-
SILVERMAN, N., and T. MANIATIS, 2001 NF-κB signaling pathways in mammalian and insect innate immunity. Genes Dev. 15: 2321-2342.
-
(2001)
Genes Dev.
, vol.15
, pp. 2321-2342
-
-
Silverman, N.1
Maniatis, T.2
-
47
-
-
0037186564
-
Adaptive protein evolution in Drosophila
-
SMITH, N. G. C., and A. EYRE-WALKER, 2002 Adaptive protein evolution in Drosophila. Nature 415: 1022-1024.
-
(2002)
Nature
, vol.415
, pp. 1022-1024
-
-
Smith, N.G.C.1
Eyre-Walker, A.2
-
48
-
-
0029965776
-
One step ahead of the game: Viral immunomodulatory molecules
-
SPRIGGS, M. K., 1996 One step ahead of the game: viral immunomodulatory molecules. Annu. Rev. Immunol. 14: 101-130.
-
(1996)
Annu. Rev. Immunol.
, vol.14
, pp. 101-130
-
-
Spriggs, M.K.1
-
49
-
-
0033917639
-
Plant-pathogen arms races at the molecular level
-
STAHL, E. A., and J. G. BISHOP, 2000 Plant-pathogen arms races at the molecular level. Curr. Opin. Plant Biol. 3: 299-304.
-
(2000)
Curr. Opin. Plant Biol.
, vol.3
, pp. 299-304
-
-
Stahl, E.A.1
Bishop, J.G.2
-
51
-
-
0021066244
-
Evolutionary relationship of DNA sequences in finite populations
-
TAJIMA, F., 1983 Evolutionary relationship of DNA sequences in finite populations. Genetics 105: 437-460.
-
(1983)
Genetics
, vol.105
, pp. 437-460
-
-
Tajima, F.1
-
52
-
-
0031777618
-
Rate variation of DNA sequence evolution in the Drosophila lineages
-
TAKANO, T. S., 1998 Rate variation of DNA sequence evolution in the Drosophila lineages. Genetics 149: 959-970.
-
(1998)
Genetics
, vol.149
, pp. 959-970
-
-
Takano, T.S.1
-
53
-
-
0024392448
-
Positive Darwinian selection observed at the variable-region genes of immunoglobulins
-
TANAKA, T., and M. NEI, 1989 Positive Darwinian selection observed at the variable-region genes of immunoglobulins. Mol. Biol. Evol. 6: 447-459.
-
(1989)
Mol. Biol. Evol.
, vol.6
, pp. 447-459
-
-
Tanaka, T.1
Nei, M.2
-
54
-
-
0030068317
-
Differences in crossover frequency and distribution among three sibling species of Drosophila
-
TRUE, J. R., J. M. MERCER and C. C. LAURIE, 1996 Differences in crossover frequency and distribution among three sibling species of Drosophila. Genetics 142: 507-523.
-
(1996)
Genetics
, vol.142
, pp. 507-523
-
-
True, J.R.1
Mercer, J.M.2
Laurie, C.C.3
-
55
-
-
0025318864
-
The "effective number of codons" used in a gene
-
WRIGHT, F., 1990 The "effective number of codons" used in a gene. Gene 87: 23-29.
-
(1990)
Gene
, vol.87
, pp. 23-29
-
-
Wright, F.1
|