메뉴 건너뛰기




Volumn 36, Issue 11, 2008, Pages 3667-3675

LINE-1 methylation status of endogenous DNA double-strand breaks

Author keywords

[No Author keywords available]

Indexed keywords

BISULFITE; DOUBLE STRANDED DNA;

EID: 46649105316     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn261     Document Type: Article
Times cited : (47)

References (44)
  • 1
    • 0242300088 scopus 로고    scopus 로고
    • Endogenous DNA double-strand breaks: Production, fidelity of repair, and induction of cancer
    • Vilenchik,M.M. and Knudson,A.G. (2003) Endogenous DNA double-strand breaks: Production, fidelity of repair, and induction of cancer. Proc. Natl Acad. Sci. USA, 100, 12871-12876.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 12871-12876
    • Vilenchik, M.M.1    Knudson, A.G.2
  • 2
    • 0020699979 scopus 로고
    • Hypomethylation distinguishes genes of some human cancers from their normal counterparts
    • Feinberg,A.P. and Vogelstein,B. (1983) Hypomethylation distinguishes genes of some human cancers from their normal counterparts. Nature 301, 89-92.
    • (1983) Nature , vol.301 , pp. 89-92
    • Feinberg, A.P.1    Vogelstein, B.2
  • 3
    • 1042278765 scopus 로고    scopus 로고
    • Tbe history of cancer epigenetics
    • Feinberg,A.P. and Tycko,B. (2004) Tbe history of cancer epigenetics. Nat. Rev. Cancer, 4, 143-153.
    • (2004) Nat. Rev. Cancer , vol.4 , pp. 143-153
    • Feinberg, A.P.1    Tycko, B.2
  • 5
    • 46649094515 scopus 로고    scopus 로고
    • Quantitative PCR analysis for methylation level of genome: Clinical implications in cancer
    • Mutirangura,A. (2007) Quantitative PCR analysis for methylation level of genome: Clinical implications in cancer. Asian Biomedicine, 1 121-128.
    • (2007) Asian Biomedicine , vol.1 , pp. 121-128
    • Mutirangura, A.1
  • 6
    • 0030983076 scopus 로고    scopus 로고
    • DNA methylation and genetic instability in colorectal cancer cells
    • Lengauer,C., Kinzler,K.W. and Vogelstein,B. (1997) DNA methylation and genetic instability in colorectal cancer cells. Proc. Natl Acad. Sci. USA, 94, 2545-2550.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 2545-2550
    • Lengauer, C.1    Kinzler, K.W.2    Vogelstein, B.3
  • 7
    • 0242584454 scopus 로고    scopus 로고
    • Chromosomal instability and tumors promoted by DNA hypomethylation
    • Eden,A., Gaudet,F., Waghmare,A. and Jaenisch,R. (2003) Chromosomal instability and tumors promoted by DNA hypomethylation. Science, 300, 455.
    • (2003) Science , vol.300 , pp. 455
    • Eden, A.1    Gaudet, F.2    Waghmare, A.3    Jaenisch, R.4
  • 10
    • 0033081639 scopus 로고    scopus 로고
    • Frequent hypomethylation in Wilms tumors of pericentromeric DNA in chromosomes 1 and 16
    • Qu,G.Z., Grundy,P.E., Narayan,A. and Ehrlich,M. (1999) Frequent hypomethylation in Wilms tumors of pericentromeric DNA in chromosomes 1 and 16. Cancer Genet. Cytogenet., 109, 34-39.
    • (1999) Cancer Genet. Cytogenet , vol.109 , pp. 34-39
    • Qu, G.Z.1    Grundy, P.E.2    Narayan, A.3    Ehrlich, M.4
  • 12
    • 0024431684 scopus 로고
    • In vivo footprinting of a muscle specific enhancer by ligation mediated PCR
    • Mueller,P.R. and Wold,B. (1989) In vivo footprinting of a muscle specific enhancer by ligation mediated PCR. Science, 246, 780-786.
    • (1989) Science , vol.246 , pp. 780-786
    • Mueller, P.R.1    Wold, B.2
  • 13
    • 0024462602 scopus 로고
    • Genomic sequencing and methylation analysis by ligation mediated PCR
    • Pfeifer,G.P., Steigerwald,S.D., Mueller,P.R., Wold,B. and Riggs,A.D. (1989) Genomic sequencing and methylation analysis by ligation mediated PCR. Science, 246, 810-813.
    • (1989) Science , vol.246 , pp. 810-813
    • Pfeifer, G.P.1    Steigerwald, S.D.2    Mueller, P.R.3    Wold, B.4    Riggs, A.D.5
  • 14
    • 0027769386 scopus 로고
    • Double-stand signal sequence breaks in V(D)J recombination are blunt, 5-phosphorylated, RAG-dependent, and cell cycle regulated
    • Schlissel,M., Constantinescu,A. Morrow,T., Baxter,M. and Peng,A. (1993) Double-stand signal sequence breaks in V(D)J recombination are blunt, 5-phosphorylated, RAG-dependent, and cell cycle regulated. Genes. Dev., 7, 2520-2532.
    • (1993) Genes. Dev , vol.7 , pp. 2520-2532
    • Schlissel, M.1    Constantinescu, A.2    Morrow, T.3    Baxter, M.4    Peng, A.5
  • 15
    • 0030825309 scopus 로고    scopus 로고
    • COBRA: A sensitive and quantitative DNA methylation assay
    • Xiong,Z. and Laird,P.W. (1997) COBRA: A sensitive and quantitative DNA methylation assay. Nucleic Acids Res., 25, 2532-2534.
    • (1997) Nucleic Acids Res , vol.25 , pp. 2532-2534
    • Xiong, Z.1    Laird, P.W.2
  • 16
    • 0028958942 scopus 로고
    • Characterization of coding ends in thymocytes of scid mice: Implications for the mechanism of V(D)J recombination
    • Zhu,C. and Roth,D.B. (1995) Characterization of coding ends in thymocytes of scid mice: Implications for the mechanism of V(D)J recombination. Immunity, 2, 101-112.
    • (1995) Immunity , vol.2 , pp. 101-112
    • Zhu, C.1    Roth, D.B.2
  • 17
    • 0031582059 scopus 로고    scopus 로고
    • Identification of V(D)J recombination coding end intermediates in normal thymocytes
    • Livak,F. and Schatz,D.G. (1997) Identification of V(D)J recombination coding end intermediates in normal thymocytes. J. Mol. Biol., 267, 1-9.
    • (1997) J. Mol. Biol , vol.267 , pp. 1-9
    • Livak, F.1    Schatz, D.G.2
  • 18
    • 0034626802 scopus 로고    scopus 로고
    • Cell-cycle-regulated DNA double-stranded breaks in somatic hypermutation of immunoglobulin genes
    • Papavasiliou,F.N. and Schatz,D.G. (2000) Cell-cycle-regulated DNA double-stranded breaks in somatic hypermutation of immunoglobulin genes. Nature, 408, 216-221.
    • (2000) Nature , vol.408 , pp. 216-221
    • Papavasiliou, F.N.1    Schatz, D.G.2
  • 19
    • 0033988745 scopus 로고    scopus 로고
    • In vivo footprinting using UV light and ligation-mediated PCR
    • Pfeifer,G.P. and Tommasi,S. (2000) In vivo footprinting using UV light and ligation-mediated PCR. Methods Mol. Biol., 130, 13-27.
    • (2000) Methods Mol. Biol , vol.130 , pp. 13-27
    • Pfeifer, G.P.1    Tommasi, S.2
  • 20
    • 33846898601 scopus 로고    scopus 로고
    • Quantifying chromatin accessibility of individual gene family members by combining ligation-mediated PCR with real-time PCR
    • Espinoza,C.R. and Feeney,A.J. (2006) Quantifying chromatin accessibility of individual gene family members by combining ligation-mediated PCR with real-time PCR. Biotechniques, 41, 404, 406, 408.
    • (2006) Biotechniques , vol.404 , Issue.406 , pp. 408
    • Espinoza, C.R.1    Feeney, A.J.2
  • 22
    • 0027473988 scopus 로고
    • Multiplex PCR of three dinucleotide repeats in the Prader-Willi/Angelman critical region (15q11-q13): Molecular diagnosis and mechanism of uniparental disomy
    • Mutirangura,A., Greenberg,F., Butler,M.G., Malcolm,S., Nicholls,R.D., Chakravarti,A. and Ledbetter,D.H. (1993) Multiplex PCR of three dinucleotide repeats in the Prader-Willi/Angelman critical region (15q11-q13): Molecular diagnosis and mechanism of uniparental disomy. Hum. Mol. Genet., 2, 143-151.
    • (1993) Hum. Mol. Genet , vol.2 , pp. 143-151
    • Mutirangura, A.1    Greenberg, F.2    Butler, M.G.3    Malcolm, S.4    Nicholls, R.D.5    Chakravarti, A.6    Ledbetter, D.H.7
  • 23
    • 0015119570 scopus 로고
    • An evaluation of the double thymidine block for synchronizing mammalian cells at the G1-S border
    • Bostock,C.J., Prescott,D.M. and Kirkpatrick,J.B. (1971) An evaluation of the double thymidine block for synchronizing mammalian cells at the G1-S border. Exp. Cell Res., 68, 163-168.
    • (1971) Exp. Cell Res , vol.68 , pp. 163-168
    • Bostock, C.J.1    Prescott, D.M.2    Kirkpatrick, J.B.3
  • 24
    • 8444230129 scopus 로고    scopus 로고
    • LINE-1 insertion dimorphisms identification by PCR
    • Pornthanakasem,W. and Mutirangura,A. (2004) LINE-1 insertion dimorphisms identification by PCR. Biotechniques, 37, 750, 752.
    • (2004) Biotechniques , vol.37 , Issue.750 , pp. 752
    • Pornthanakasem, W.1    Mutirangura, A.2
  • 25
    • 0032948005 scopus 로고    scopus 로고
    • Synergy of demethylation and histone deacetylase inhibition in the re-expression of genes silenced in cancer
    • Cameron,E.E., Bachman,K.E., Myohanen,S., Herman,J.G. and Baylin,S.B. (1999) Synergy of demethylation and histone deacetylase inhibition in the re-expression of genes silenced in cancer. Nat. Genet., 21 103-107.
    • (1999) Nat. Genet , vol.21 , pp. 103-107
    • Cameron, E.E.1    Bachman, K.E.2    Myohanen, S.3    Herman, J.G.4    Baylin, S.B.5
  • 26
    • 17344370076 scopus 로고    scopus 로고
    • The impact of L1 retrotransposons on the human genome
    • Kazazian,H.H. Jr and Moran,J.V. (1998) The impact of L1 retrotransposons on the human genome. Nat. Genet., 19, 19-24.
    • (1998) Nat. Genet , vol.19 , pp. 19-24
    • Kazazian Jr, H.H.1    Moran, J.V.2
  • 27
    • 0031925532 scopus 로고    scopus 로고
    • Structure of nonhairpin coding-end DNA breaks in cells undergoing V(D)J recombination
    • Schlissel,M.S. (1998) Structure of nonhairpin coding-end DNA breaks in cells undergoing V(D)J recombination. Mol. Cell Biol., 19, 2029-2037.
    • (1998) Mol. Cell Biol , vol.19 , pp. 2029-2037
    • Schlissel, M.S.1
  • 28
    • 0034889359 scopus 로고    scopus 로고
    • Transposon-induced hotspots for genomic instability
    • Kidwell,M.G. and Holyoake,A.J. (2001) Transposon-induced hotspots for genomic instability. Genome Res., 11, 1321-1322.
    • (2001) Genome Res , vol.11 , pp. 1321-1322
    • Kidwell, M.G.1    Holyoake, A.J.2
  • 29
    • 5644277503 scopus 로고    scopus 로고
    • Mismatch repair proteins: Key regulators of genetic recombination
    • Surtees,J.A., Argueso,J.L. and Alani,E. (2004) Mismatch repair proteins: key regulators of genetic recombination. Cytogenet. Genome Res., 107, 146-159.
    • (2004) Cytogenet. Genome Res , vol.107 , pp. 146-159
    • Surtees, J.A.1    Argueso, J.L.2    Alani, E.3
  • 30
    • 0032784908 scopus 로고    scopus 로고
    • Interspersed repeats and other mementos of transposable elements in mammalian genomes
    • Smit,A.F. (1999) Interspersed repeats and other mementos of transposable elements in mammalian genomes. Curr. Opin. Genet. Dev., 9, 657-663.
    • (1999) Curr. Opin. Genet. Dev , vol.9 , pp. 657-663
    • Smit, A.F.1
  • 32
    • 0032951131 scopus 로고    scopus 로고
    • Identification of regulatory and catalytic domains in the apoptosis nuclease DFF40/CAD
    • Inohara,N., Koseki,T., Chen,S., Benedict,M.A. and Nunez,G. (1999) Identification of regulatory and catalytic domains in the apoptosis nuclease DFF40/CAD. J. Biol. Chem., 274, 270-274.
    • (1999) J. Biol. Chem , vol.274 , pp. 270-274
    • Inohara, N.1    Koseki, T.2    Chen, S.3    Benedict, M.A.4    Nunez, G.5
  • 33
    • 0034641918 scopus 로고    scopus 로고
    • The biochemistry of apoptosis
    • Hengartner,M.O. (2000) The biochemistry of apoptosis. Nature, 407, 770-776.
    • (2000) Nature , vol.407 , pp. 770-776
    • Hengartner, M.O.1
  • 34
    • 0031023614 scopus 로고    scopus 로고
    • Apoptotic DNA fragmentation is detected by a semi-quantitative ligation-mediated PCR of blunt DNA ends
    • Staley,K., Blaschke,A.J. and Chun,J. (1997) Apoptotic DNA fragmentation is detected by a semi-quantitative ligation-mediated PCR of blunt DNA ends. Cell Death Differ., 4, 66-75.
    • (1997) Cell Death Differ , vol.4 , pp. 66-75
    • Staley, K.1    Blaschke, A.J.2    Chun, J.3
  • 35
    • 0029186157 scopus 로고
    • Cell cycle analysis of apoptosis using flow cytometry
    • Sherwood,S.W. and Schimke,R.T. (1995) Cell cycle analysis of apoptosis using flow cytometry. Methods Cell Biol., 46, 77-97.
    • (1995) Methods Cell Biol , vol.46 , pp. 77-97
    • Sherwood, S.W.1    Schimke, R.T.2
  • 36
    • 0035910550 scopus 로고    scopus 로고
    • Hydroxyl radical-induced apoptosis in human tumor cells is associated with telomere shortening but not telomerase inhibition and caspase activation
    • Ren,J.G., Xia,H.L., Just,T. and Dai,Y.R. (2001) Hydroxyl radical-induced apoptosis in human tumor cells is associated with telomere shortening but not telomerase inhibition and caspase activation. FEBS Lett., 488, 123-132.
    • (2001) FEBS Lett , vol.488 , pp. 123-132
    • Ren, J.G.1    Xia, H.L.2    Just, T.3    Dai, Y.R.4
  • 37
    • 0025270234 scopus 로고
    • Heterogeneity in radiation-induced DNA damage and repair in tumor and normal cells measured using the "comet" assay
    • Olive,P.L., Banath,J.P. and Durand,R.E. (1990) Heterogeneity in radiation-induced DNA damage and repair in tumor and normal cells measured using the "comet" assay. Radiat. Res., 122, 86-94.
    • (1990) Radiat. Res , vol.122 , pp. 86-94
    • Olive, P.L.1    Banath, J.P.2    Durand, R.E.3
  • 38
    • 0025273833 scopus 로고
    • Asymmetric field inversion gel electrophoresis: A new method for detecting DNA double-strand breaks in mammalian cells
    • Stamato,T.D. and Denko,N. (1990) Asymmetric field inversion gel electrophoresis: A new method for detecting DNA double-strand breaks in mammalian cells. Radiat. Res., 121, 196-205.
    • (1990) Radiat. Res , vol.121 , pp. 196-205
    • Stamato, T.D.1    Denko, N.2
  • 40
    • 2942543377 scopus 로고    scopus 로고
    • Expression and radiation-induced phosphorylation of histone H2AX in mammalian cells
    • Yoshida,K., Yoshida,S.H., Shimoda,C. and Morita,T. (2003) Expression and radiation-induced phosphorylation of histone H2AX in mammalian cells. J. Radiat. Res., 44, 47-51.
    • (2003) J. Radiat. Res , vol.44 , pp. 47-51
    • Yoshida, K.1    Yoshida, S.H.2    Shimoda, C.3    Morita, T.4
  • 41
    • 19344370467 scopus 로고    scopus 로고
    • Mechanism of DNA double-strand break repair by non-homologousend joining
    • Hefferin,M.L. and Tomkinson,A.E. (2005) Mechanism of DNA double-strand break repair by non-homologousend joining. DNA Repair, 4, 639-648.
    • (2005) DNA Repair , vol.4 , pp. 639-648
    • Hefferin, M.L.1    Tomkinson, A.E.2
  • 42
    • 3242886313 scopus 로고    scopus 로고
    • Homologous recombination-mediated double-strand break repair
    • Wyman,C., Ristic,D. and Kanaar,R. (2004) Homologous recombination-mediated double-strand break repair. DNA Repair, 3, 827-833.
    • (2004) DNA Repair , vol.3 , pp. 827-833
    • Wyman, C.1    Ristic, D.2    Kanaar, R.3
  • 43
    • 0033988576 scopus 로고    scopus 로고
    • A double-strand break in a chromosomal LINE element can be repaired by gene conversion with various endogenous LINE elements in mouse cells
    • Tremblay,A., Jasin,M. and Chartrand,P. (2000) A double-strand break in a chromosomal LINE element can be repaired by gene conversion with various endogenous LINE elements in mouse cells. Mol. Cell Biol., 20 54-60.
    • (2000) Mol. Cell Biol , vol.20 , pp. 54-60
    • Tremblay, A.1    Jasin, M.2    Chartrand, P.3
  • 44
    • 33751310350 scopus 로고    scopus 로고
    • A deletion at the mouse Xist gene exposes trans-effects that alter the heterochromatin of the inactive X chromosome and the replication time and DNA stability of both X chromosomes
    • Diaz-Perez,S.V., Ferguson,D.O., Wang,C., Csankovszki,G., Wang,C., Tsai,S.C., Dutta,D., Perez,V., Kim,S., Eller,C.D. et al. (2006) A deletion at the mouse Xist gene exposes trans-effects that alter the heterochromatin of the inactive X chromosome and the replication time and DNA stability of both X chromosomes. Genetics, 174, 1115-1133.
    • (2006) Genetics , vol.174 , pp. 1115-1133
    • Diaz-Perez, S.V.1    Ferguson, D.O.2    Wang, C.3    Csankovszki, G.4    Wang, C.5    Tsai, S.C.6    Dutta, D.7    Perez, V.8    Kim, S.9    Eller, C.D.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.