Unconventional association of the polycomb group proteins with cytokine genes in differentiated T helper cells

Journal of Biological Chemistry

Volumn 283, Issue 19, 2008, Pages 13471-13481

  Jacob, Eyal ^a   Hod Dvorai, Reut ^a   Schif Zuck, Sagie ^a   Avni, Orly ^a,b  

^a TECHNION ISRAEL INSTITUTE OF TECHNOLOGY   (Israel)

^b NONE   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

GENE EXPRESSION; GENES; GENETIC ENGINEERING; LAWS AND LEGISLATION; PROTEIN FOLDING; PROTEINS;

BINDING ACTIVITIES; BINDING PATTERNS; CYCLOSPORINE A; CYTOKINE; CYTOKINE GENES; DIFFERENTIATED CELLS; EPIGENETIC REGULATIONS; HIGHER ORDERS; POLYCOMB GROUP PROTEINS; POLYCOMB PROTEINS; REGULATORY ELEMENTS; TRANSCRIPTION PROFILES; TRANSCRIPTIONAL PROGRAMS;

TRANSCRIPTION;

COMPLEMENTARY DNA; CYCLOSPORIN A; CYTOKINE; INTERLEUKIN 4; POLYCOMB GROUP PROTEIN; RECOMBINANT INTERLEUKIN 12; RNA; T LYMPHOCYTE RECEPTOR; TRANSCRIPTION FACTOR NFAT; REPRESSOR PROTEIN;

ANIMAL CELL; ARTICLE; CHROMATIN IMMUNOPRECIPITATION; GENETIC TRANSCRIPTION; HELPER CELL; IMMUNOFLUORESCENCE MICROSCOPY; LYMPHOCYTE DIFFERENTIATION; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; T LYMPHOCYTE; TH1 CELL; TH2 CELL; ANIMAL; BAGG ALBINO MOUSE; CELL CULTURE; CELL DIFFERENTIATION; CYTOLOGY; FEMALE; GENETICS; METABOLISM; PROTEIN BINDING;

ANIMALS; CELL DIFFERENTIATION; CELLS, CULTURED; CYTOKINES; FEMALE; MICE; MICE, INBRED BALB C; PROTEIN BINDING; REPRESSOR PROTEINS; T-LYMPHOCYTES, HELPER-INDUCER;

EID: 45149124859     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M709886200     Document Type: Article

References (108)

1. Ansel, K. M., Djuretic, I., Tanasa, B., and Rao, A. (2006) Annu. Rev. Immunol. 24, 607-656
2. Lee, G. R., Kim, S. T., Spilianakis, C. G., Fields, P. E., and Flavell, R. A. (2006) Immunity 24, 369-379
3. Rao, A., Luo, C., and Hogan, P. G. (1997) Annu. Rev. Immunol. 15, 707-747
4. Agarwal, S., Avni, O., and Rao, A. (2000) Immunity 12, 643-652
5. Avni, O., Lee, D., Macian, F., Szabo, S. J., Glimcher, L. H., and Rao, A. (2002) Nat. Immunol. 3, 643-651
6. Fields, P. E., Kim, S. T., and Flavell, R. A. (2002) J. Immunol. 169, 647-650
7. Messi, M., Giacchetto, I., Nagata, K., Lanzavecchia, A., Natoli, G., and Sallusto, F. (2003) Nat. Immunol. 4, 78-86
8. Yamashita, M., Ukai-Tadenuma, M., Kimura, M., Omori, M., Inami, M., Taniguchi, M., and Nakayama, T. (2002) J. Biol. Chem. 277, 42399-42408
9. Yamashita, M., Shinnakasu, R., Nigo, Y., Kimura, M., Hasegawa, A., Taniguchi, M., and Nakayama, T. (2004) J. Biol. Chem. 279, 39454-39464
10. Zhu, J., Min, B., Hu-Li, J., Watson, C. J., Grinberg, A., Wang, Q., Killeen, N., Urban, J. F., Jr., Guo, L., and Paul, W. E. (2004) Nat. Immunol. 5, 1157-1165
11. Pai, S. Y., Truitt, M. L., and Ho, I. C. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 1993-1998
12. Yamashita, M., Ukai-Tadenuma, M., Miyamoto, T., Sugaya, K., Hosokawa, H., Hasegawa, A., Kimura, M., Taniguchi, M., DeGregori, J., and Nakayama, T. (2004) J. Biol. Chem. 279, 26983-26990
13. Szabo, S. J., Kim, S. T., Costa, G. L., Zhang, X., Fathman, C. G., and Glimcher, L. H. (2000) Cell 100, 655-669
14. Lighvani, A. A., Frucht, D. M., Jankovic, D., Yamane, H., Aliberti, J., Hissong, B. D., Nguyen, B. V., Gadina, M., Sher, A., Paul, W. E., and O'Shea, J. J. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 15137-15142
15. Afkarian, M., Sedy, J. R., Yang, J., Jacobson, N. G., Cereb, N., Yang, S. Y., Murphy, T. L., and Murphy, K. M. (2002) Nat. Immunol. 3, 549-557
16. Mullen, A. C., High, F. A., Hutchins, A. S., Lee, H. W., Villarino, A. V., Livingston, D. M., Kung, A. L., Cereb, N., Yao, T. P., Yang, S. Y., and Reiner, S. L. (2001) Science 292, 1907-1910
17. Mullen, A. C., Hutchins, A. S., High, F. A., Lee, H. W., Sykes, K. J., Chodosh, L. A., and Reiner, S. L. (2002) Nat. Immunol. 3, 652-658
18. Szabo, S. J., Sullivan, B. M., Stemmann, C., Satoskar, A. R., Sleckman, B. P., and Glimcher, L. H. (2002) Science 295, 338-342
19. Bantignies, F., and Cavalli, G. (2006) Curr. Opin. Cell Biol. 18, 275-283
20. Brock, H. W., and Fisher, C. L. (2005) Dev. Dyn. 232, 633-655
21. Grimaud, C., Negre, N., and Cavalli, G. (2006) Chromosome Res. 14, 363-375
22. Levine, S. S., King, I. F., and Kingston, R. E. (2004) Trends Biochem. Sci 29, 478-485
23. Muller, J., and Kassis, J. A. (2006) Curr. Opin. Genet. Dev. 16, 476-484
24. Ringrose, L., and Paro, R. (2007) Development 134, 223-232
25. Schuettengruber, B., Chourrout, D., Vervoort, M., Leblanc, B., and Cavalli, G. (2007) Cell 128, 735-745
26. Schwartz, Y. B., and Pirrotta, V. (2007) Nat. Rev. Genet. 8, 9-22
27. Sparmann, A., and van Lohuizen, M. (2006) Nat. Rev. Cancer 6, 846-856
28. Boyer, L. A., Plath, K., Zeitlinger, J., Brambrink, T., Medeiros, L. A., Lee, T. I., Levine, S. S., Wernig, M., Tajonar, A., Ray, M. K., Bell, G. W., Otte, A. P., Vidal, M., Gifford, D. K., Young, R. A., and Jaenisch, R. (2006) Nature 441, 349-353
29. Bracken, A. P., Dietrich, N., Pasini, D., Hansen, K. H., and Helin, K. (2006) Genes Dev. 20, 1123-1136
30. Lee, T. I., Jenner, R. G., Boyer, L. A., Guenther, M. G., Levine, S. S., Kumar, R. M., Chevalier, B., Johnstone, S. E., Cole, M. F., Isono, K., Koseki, H., Fuchikami, T., Abe, K., Murray, H. L., Zucker, J. P., Yuan, B., Bell, G. W., Herbolsheimer, E., Hannett, N. M., Sun, K., Odom, D. T., Otte, A. P., Volkert, T. L., Bartel, D. P., Melton, D. A., Gifford, D. K., Jaenisch, R., and Young, R. A. (2006) Cell 125, 301-313
31. Negre, N., Hennetin, J., Sun, L. V., Lavrov, S., Bellis, M., White, K. P., and Cavalli, G. (2006) PLoS Biol 4, e170
32. Schwartz, Y. B., Kahn, T. G., Nix, D. A., Li, X. Y., Bourgon, R., Biggin, M., and Pirrotta, V. (2006) Nat. Genet. 38, 700-705
33. Tolhuis, B., de Wit, E., Muijrers, I., Teunissen, H., Talhout, W., van Steensel, B., and van Lohuizen, M. (2006) Nat. Genet. 38, 694-699
34. Raaphorst, F. M., Otte, A. P., and Meijer, C. J. (2001) Trends Immunol. 22, 682-690
35. Koyanagi, M., Baguet, A., Martens, J., Margueron, R., Jenuwein, T., and Bix, M. (2005) J. Biol. Chem. 280, 31470-31477
36. Kimura, M., Koseki, Y., Yamashita, M., Watanabe, N., Shimizu, C., Katsumoto, T., Kitamura, T., Taniguchi, M., Koseki, H., and Nakayama, T. (2001) Immunity 15, 275-287
37. Yamashita, M., Hirahara, K., Shinnakasu, R., Hosokawa, H., Norikane, S., Kimura, M. Y., Hasegawa, A., and Nakayama, T. (2006) Immunity 24, 611-622
38. Otte, A. P., and Kwaks, T. H. (2003) Curr. Opin. Genet. Dev. 13, 448-454
39. Rezai-Zadeh, N., Zhang, X., Namour, F., Fejer, G., Wen, Y. D., Yao, Y. L., Gyory, I., Wright, K., and Seto, E. (2003) Genes Dev. 17, 1019-1029
40. de Napoles, M., Mermoud, J. E., Wakao, R., Tang, Y. A., Endoh, M., Appanah, R., Nesterova, T. B., Silva, J., Otte, A. P., Vidal, M., Koseki, H., and Brockdorff, N. (2004) Dev. Cell 7, 663-676
41. Wang, H., Wang, L., Erdjument-Bromage, H., Vidal, M., Tempst, P., Jones, R. S., and Zhang, Y. (2004) Nature 431, 873-878
42. Muller, J., Hart, C. M., Francis, N. J., Vargas, M. L., Sengupta, A., Wild, B., Miller, E. L., O'Connor, M. B., Kingston, R. E., and Simon, J. A. (2002) Cell 111, 197-208
43. Kuzmichev, A., Nishioka, K., Erdjument-Bromage, H., Tempst, P., and Reinberg, D. (2002) Genes Dev. 16, 2893-2905
44. Czermin, B., Melfi, R., McCabe, D., Seitz, V., Imhof, A., and Pirrotta, V. (2002) Cell 111, 185-196
45. Cao, R., Wang, L., Wang, H., Xia, L., Erdjument-Bromage, H., Tempst, P., Jones, R. S., and Zhang, Y. (2002) Science 298, 1039-1043
46. Vire, E., Brenner, C., Deplus, R., Blanchon, L., Fraga, M., Didelot, C., Morey, L., Van Eynde, A., Bernard, D., Vanderwinden, J. M., Bollen, M., Esteller, M., Di Croce, L., de Launoit, Y., and Fuks, F. (2005) Nature 439, 871-874
47. Francis, N. J., and Kingston, R. E. (2001) Nat. Rev. Mol. Cell. Biol. 2, 409-421
48. Shang, Y., Hu, X., DiRenzo, J., Lazar, M. A., and Brown, M. (2000) Cell 103, 843-852
49. Gordon, S., Akopyan, G., Garban, H., and Bonavida, B. (2006) Oncogene 25, 1125-1142
50. Shi, Y., Lee, J. S., and Galvin, K. M. (1997) Biochim. Biophys. Acta 1332, F49-F66
51. Thomas, M. J., and Seto, E. (1999) Gene 236, 197-208
52. Donohoe, M. E., Zhang, X., McGinnis, L., Biggers, J., Li, E., and Shi, Y. (1999) Mol. Cell. Biol. 19, 7237-7244
53. Guo, J., Casolaro, V., Seto, E., Yang, W. M., Chang, C., Seminario, M. C., Keen, J., and Georas, S. N. (2001) J. Biol. Chem. 276, 48871-48878
54. Soutto, M., Zhang, F., Enerson, B., Tong, Y., Boothby, M., and Aune, T. M. (2002) J. Immunol. 169, 4205-4212
55. Sweetser, M. T., Hoey, T., Sun, Y. L., Weaver, W. M., Price, G. A., and Wilson, C. B. (1998) J. Biol. Chem. 273, 34775-34783
56. Ye, J., Cippitelli, M., Dorman, L., Ortaldo, J. R., and Young, H. A. (1996) Mol. Cell. Biol. 16, 4744-4753
57. Lee, D. U., Avni, O., Chen, L., and Rao, A. (2004) J. Biol. Chem. 279, 4802-4810
58. Agarwal, S., and Rao, A. (1998) Immunity 9, 765-775
59. Ansel, K. M., Greenwald, R. J., Agarwal, S., Bassing, C. H., Monticelli, S., Interlandi, J., Djuretic, I. M., Lee, D. U., Sharpe, A. H., Alt, F. W., and Rao, A. (2004) Nat. Immunol. 5, 1251-1259
60. Djuretic, I. M., Levanon, D., Negreanu, V., Groner, Y., Rao, A., and Ansel, K. M. (2007) Nat Immunol 8, 145-153
61. Solymar, D. C., Agarwal, S., Bassing, C. H., Alt, F. W., and Rao, A. (2002) Immunity 17, 41-50
62. Guo, L., Hu-Li, J., and Paul, W. E. (2004) Immunity 20, 193-203
63. Fields, P. E., Lee, G. R., Kim, S. T., Bartsevich, V. V., and Flavell, R. A. (2004) Immunity 21, 865-876
64. Lee, D. U., and Rao, A. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 16010-16015
65. Lee, G. R., Spilianakis, C. G., and Flavell, R. A. (2005) Nat. Immunol. 6, 42-48
66. Martinez, A. M., and Cavalli, G. (2006) Cell Cycle 5, 1189-1197
67. Palko, L., Bass, H. W., Beyrouthy, M. J., and Hurt, M. M. (2004) J. Cell Sci. 117, 465-476
68. Kajiume, T., Ninomiya, Y., Ishihara, H., Kanno, R., and Kanno, M. (2004) Exp. Hematol. 32, 571-578
69. Akasaka, T., Kanno, M., Balling, R., Mieza, M. A., Taniguchi, M., and Koseki, H. (1996) Development 122, 1513-1522
70. Akasaka, T., Tsuji, K., Kawahira, H., Kanno, M., Harigaya, K., Hu, L., Ebihara, Y., Nakahata, T., Tetsu, O., Taniguchi, M., and Koseki, H. (1997) Immunity 7, 135-146
71. Ho, I. C., and Pai, S. Y. (2007) Cell Mol. Immunol. 4, 15-29
72. Cao, R., Tsukada, Y., and Zhang, Y. (2005) Mol. Cell 20, 845-854
73. Ben-Saadon, R., Zaaroor, D., Ziv, T., and Ciechanover, A. (2006) Mol. Cell 24, 701-711
74. Buchwald, G., van der Stoop, P., Weichenrieder, O., Perrakis, A., van Lohuizen, M., and Sixma, T. K. (2006) EMBO J. 25, 2465-2474
75. del Mar Lorente, M., Marcos-Gutierrez, C., Perez, C., Schoorlemmer, J., Ramirez, A., Magin, T., and Vidal, M. (2000) Development 127, 5093-5100
76. Schoorlemmer, J., Marcos-Gutierrez, C., Were, F., Martinez, R., Garcia, E., Satijn, D. P., Otte, A. P., and Vidal, M. (1997) EMBO J. 16, 5930-5942
77. Silva, J., Mak, W., Zvetkova, I., Appanah, R., Nesterova, T. B., Webster, Z., Peters, A. H., Jenuwein, T., Otte, A. P., and Brockdorff, N. (2003) Dev. Cell 4, 481-495
78. Kuzmichev, A., Jenuwein, T., Tempst, P., and Reinberg, D. (2004) Mol. Cell 14, 183-193
79. Chang, S., and Aune, T. M. (2007) Nat. Immunol. 8, 723-731
80. Fujimura, Y., Isono, K., Vidal, M., Endoh, M., Kajita, H., Mizutani-Koseki, Y., Takihara, Y., van Lohuizen, M., Otte, A., Jenuwein, T., Deschamps, J., and Koseki, H. (2006) Development 133, 2371-2381
81. Lessard, J., and Sauvageau, G. (2003) Exp. Hematol. 31, 567-585
82. Papp, B., and Muller, J. (2006) Genes Dev. 20, 2041-2054
83. Ringrose, L., Ehret, H., and Paro, R. (2004) Mol. Cell 16, 641-653
84. Hobert, O., Jallal, B., and Ullrich, A. (1996) Mol. Cell. Biol. 16, 3066-3073
85. Su, I. H., Dobenecker, M. W., Dickinson, E., Oser, M., Basavaraj, A., Marqueron, R., Viale, A., Reinberg, D., Wulfing, C., and Tarakhovsky, A. (2005) Cell 121, 425-436
86. Ogawa, M., Hiraoka, Y., and Aiso, S. (2003) Immunol Lett. 86, 57-61
87. Witte, V., Laffert, B., Rosorius, O., Lischka, P., Blume, K., Galler, G., Stilper, A., Willbold, D., D'Aloja, P., Sixt, M., Kolanus, J., Ott, M., Kolanus, W., Schuler, G., and Baur, A. S. (2004) Mol. Cell 13, 179-190
88. Hosokawa, H., Kimura, M. Y., Shinnakasu, R., Suzuki, A., Miki, T., Koseki, H., van Lohuizen, M., Yamashita, M., and Nakayama, T. (2006) J. Immunol. 177, 7656-7664
89. Rincon-Arano, H., Valadez-Graham, V., Guerrero, G., Escamilla-Del-Arenal, M., and Recillas-Targa, F. (2005) J. Mol. Biol. 349, 961-975
90. Voncken, J. W., Schweizer, D., Aagaard, L., Sattler, L., Jantsch, M. F., and van Lohuizen, M. (1999) J. Cell Sci. 112, 4627-4639
91. Buchenau, P., Hodgson, J., Strutt, H., and Arndt-Jovin, D. J. (1998) J. Cell Biol. 141, 469-481
92. Dietzel, S., Niemann, H., Bruckner, B., Maurange, C., and Paro, R. (1999) Chromosoma 108, 83-94
93. Miyagishima, H., Isono, K., Fujimura, Y., Iyo, M., Takihara, Y., Masumoto, H., Vidal, M., and Koseki, H. (2003) Histochem Cell Biol. 120, 111-119
94. Voncken, J. W., Niessen, H., Neufeld, B., Rennefahrt, U., Dahlmans, V., Kubben, N., Holzer, B., Ludwig, S., and Rapp, U. R. (2005) J. Biol. Chem. 280, 5178-5187
95. Ficz, G., Heintzmann, R., and Arndt-Jovin, D. J. (2005) Development 132, 3963-3976
96. Cai, S., Lee, C. C., and Kohwi-Shigematsu, T. (2006) Nat. Genet. 38, 1278-1288
97. Spilianakis, C. G., and Flavell, R. A. (2004) Nat. Immunol. 5, 1017-1027
98. Eivazova, E. R., and Aune, T. M. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 251-256
99. Eivazova, E. R., Vassetzky, Y. S., and Aune, T. M. (2007) Genes Immun. 8, 35-43
100. Spilianakis, C. G., Lalioti, M. D., Town, T., Lee, G. R., and Flavell, R. A. (2005) Nature 435, 637-645
101. Razin, S. V., Iarovaia, O. V., Sjakste, N., Sjakste, T., Bagdoniene, L., Rynditch, A. V., Eivazova, E. R., Lipinski, M., and Vassetzky, Y. S. (2007) J. Mol. Biol. 369, 597-607
102. Grimaud, C., Bantignies, F., Pal-Bhadra, M., Ghana, P., Bhadra, U., and Cavalli, G. (2006) Cell 124, 957-971
103. Monticelli, S., Ansel, K. M., Xiao, C., Socci, N. D., Krichevsky, A. M., Thai, T. H., Rajewsky, N., Marks, D. S., Sander, C., Rajewsky, K., Rao, A., and Kosik, K. S. (2005) Genome Biol. 6, R71
104. Liu, H., Schmidt-Supprian, M., Shi, Y., Hobeika, E., Barteneva, N., Jumaa, H., Pelanda, R., Reth, M., Skok, J., Rajewsky, K., and Shi, Y. (2007) Genes Dev. 21, 1179-1189
105. Su, I. H., Basavaraj, A., Krutchinsky, A. N., Hobert, O., Ullrich, A., Chait, B. T., and Tarakhovsky, A. (2003) Nat. Immunol. 4, 124-131
106. Calame, K., and Atchison, M. (2007) Genes Dev. 21, 1145-1152
107. Kosak, S. T., Skok, J. A., Medina, K. L., Riblet, R., Le Beau, M. M., Fisher, A. G., and Singh, H. (2002) Science 296, 158-162
108. Skok, J. A., Gisler, R., Novatchkova, M., Farmer, D., de Laat, W., and Busslinger, M. (2007) Nat. Immunol. 8, 378-387