-
1
-
-
0033520969
-
Quality control by DNA repair
-
1 Lindahl T, Wood RD. Quality control by DNA repair. Science 1999 ; 286: 1897–1905.
-
(1999)
Science
, vol.286
, pp. 1897-1905
-
-
Lindahl, T1
Wood, RD2
-
2
-
-
0037115920
-
Structure and function of nucleases in DNA repair: shape, grip and blade of the DNA scissors
-
2 Nishino T, Morikawa K. Structure and function of nucleases in DNA repair: shape, grip and blade of the DNA scissors. Oncogene 2002 ; 21: 9022–9032.
-
(2002)
Oncogene
, vol.21
, pp. 9022-9032
-
-
Nishino, T1
Morikawa, K2
-
3
-
-
0035902108
-
Genome maintenance mechanisms for preventing cancer
-
3 Hoeijmakers JHJ. Genome maintenance mechanisms for preventing cancer. Nature 2001 ; 411: 366–374.
-
(2001)
Nature
, vol.411
, pp. 366-374
-
-
Hoeijmakers, JHJ1
-
4
-
-
0029892790
-
DNA excision repair
-
4 Sancar A. DNA excision repair. Annu Rev Biochem 1996 ; 65: 43–81.
-
(1996)
Annu Rev Biochem
, vol.65
, pp. 43-81
-
-
Sancar, A1
-
5
-
-
0029892791
-
DNA repair in eukaryotes
-
5 Wood RD. DNA repair in eukaryotes. Annu Rev Biochem 1996 ; 65: 135–167.
-
(1996)
Annu Rev Biochem
, vol.65
, pp. 135-167
-
-
Wood, RD1
-
6
-
-
0033118354
-
Molecular mechanism of nucleotide excision repair
-
6 de Laat WL, Jaspers NGJ, Hoeijmakers JHJ. Molecular mechanism of nucleotide excision repair. Genes Dev 1999 ; 13: 768–785.
-
(1999)
Genes Dev
, vol.13
, pp. 768-785
-
-
de Laat, WL1
Jaspers, NGJ2
Hoeijmakers, JHJ3
-
7
-
-
0037376173
-
Divide and conquer: nucleotide excision repair battles cancer and ageing
-
7 Mitchell JR, Hoeijmakers JHJ, Niedernhofer LJ. Divide and conquer: nucleotide excision repair battles cancer and ageing. Curr Opin Cell Biol 2003 ; 15: 232–240.
-
(2003)
Curr Opin Cell Biol
, vol.15
, pp. 232-240
-
-
Mitchell, JR1
Hoeijmakers, JHJ2
Niedernhofer, LJ3
-
8
-
-
24044532209
-
Transcription‐coupled repair and premature ageing
-
8 Andressoo JO, Hoeijmakers JHJ. Transcription‐coupled repair and premature ageing. Mutat Res 2005 ; 577: 179–194.
-
(2005)
Mutat Res
, vol.577
, pp. 179-194
-
-
Andressoo, JO1
Hoeijmakers, JHJ2
-
9
-
-
33644765799
-
Cell biology: ageing nucleus gets out of shape
-
9 Lans H, Hoeijmakers JHJ. Cell biology: ageing nucleus gets out of shape. Nature 2006 ; 440: 32–34.
-
(2006)
Nature
, vol.440
, pp. 32-34
-
-
Lans, H1
Hoeijmakers, JHJ2
-
10
-
-
0028948394
-
Mammalian DNA nucleotide excision repair reconstituted with purified protein components
-
10 Aboussekhra A, Biggerstaff M, Shivji MK, Vilpo JA, Moncollin V, Podust VN, Protic M, Hubscher U, Egly JM, Wood RD. Mammalian DNA nucleotide excision repair reconstituted with purified protein components. Cell 1995 ; 80: 859–868.
-
(1995)
Cell
, vol.80
, pp. 859-868
-
-
Aboussekhra, A1
Biggerstaff, M2
Shivji, MK3
Vilpo, JA4
Moncollin, V5
Podust, VN6
Protic, M7
Hubscher, U8
Egly, JM9
Wood, RD10
-
11
-
-
0035282109
-
A multistep damage recognition mechanism for global genomic nucleotide excision repair
-
11 Sugasawa K, Okamoto T, Shimizu Y, Masutani C, Iwai S, Hanaoka F. A multistep damage recognition mechanism for global genomic nucleotide excision repair. Genes Dev 2001 ; 15: 507–521.
-
(2001)
Genes Dev
, vol.15
, pp. 507-521
-
-
Sugasawa, K1
Okamoto, T2
Shimizu, Y3
Masutani, C4
Iwai, S5
Hanaoka, F6
-
12
-
-
0035102950
-
Strong functional interactions of TFIIH with XPC and XPG in human DNA nucleotide excision repair, without a preassembled repairosome
-
12 Araujo SJ, Nigg EA, Wood RD. Strong functional interactions of TFIIH with XPC and XPG in human DNA nucleotide excision repair, without a preassembled repairosome. Mol Cell Biol 2001 ; 21: 2281–2291.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 2281-2291
-
-
Araujo, SJ1
Nigg, EA2
Wood, RD3
-
13
-
-
0034737426
-
The xeroderma pigmentosum group C protein complex XPC‐HR23B plays an important role in the recruitment of transcription factor IIH to damaged DNA
-
13 Yokoi M, Masutani C, Maekawa T, Sugasawa K, Ohkuma Y, Hanaoka F. The xeroderma pigmentosum group C protein complex XPC‐HR23B plays an important role in the recruitment of transcription factor IIH to damaged DNA. J Biol Chem 2000 ; 275: 9870–9875.
-
(2000)
J Biol Chem
, vol.275
, pp. 9870-9875
-
-
Yokoi, M1
Masutani, C2
Maekawa, T3
Sugasawa, K4
Ohkuma, Y5
Hanaoka, F6
-
14
-
-
0032134423
-
Xeroderma pigmentosum group C protein complex is the initiator of global genome nucleotide excision repair
-
14 Sugasawa K, Ng JM, Masutani C, Iwai S, van der Spek PJ, Eker AP, Hanaoka F, Bootsma D, Hoeijmakers JHJ. Xeroderma pigmentosum group C protein complex is the initiator of global genome nucleotide excision repair. Mol Cell 1998 ; 2: 223–232.
-
(1998)
Mol Cell
, vol.2
, pp. 223-232
-
-
Sugasawa, K1
Ng, JM2
Masutani, C3
Iwai, S4
van der Spek, PJ5
Eker, AP6
Hanaoka, F7
Bootsma, D8
Hoeijmakers, JHJ9
-
15
-
-
0035374836
-
Centrosome protein centrin 2/caltractin 1 is part of the xeroderma pigmentosum group C complex that initiates global genome nucleotide excision repair
-
15 Araki M, Masutani C, Takemura M, Uchida A, Sugasawa K, Kondoh J, Ohkuma Y, Hanaoka F. Centrosome protein centrin 2/caltractin 1 is part of the xeroderma pigmentosum group C complex that initiates global genome nucleotide excision repair. J Biol Chem 2001 ; 276: 18665–18672.
-
(2001)
J Biol Chem
, vol.276
, pp. 18665-18672
-
-
Araki, M1
Masutani, C2
Takemura, M3
Uchida, A4
Sugasawa, K5
Kondoh, J6
Ohkuma, Y7
Hanaoka, F8
-
16
-
-
0028896837
-
Reconstitution of human DNA‐repair excision nuclease in a highly defined system
-
16 Mu D, Park CH, Matsunaga T, Hsu DS, Reardon JT, Sancar A. Reconstitution of human DNA‐repair excision nuclease in a highly defined system. J Biol Chem 1995 ; 270: 2415–2418.
-
(1995)
J Biol Chem
, vol.270
, pp. 2415-2418
-
-
Mu, D1
Park, CH2
Matsunaga, T3
Hsu, DS4
Reardon, JT5
Sancar, A6
-
17
-
-
0031013308
-
Open complex formation around a lesion during nucleotide excision repair provides a structure for cleavage by human XPG protein
-
17 Evans E, Fellows J, Coffer A, Wood RD. Open complex formation around a lesion during nucleotide excision repair provides a structure for cleavage by human XPG protein. EMBO J 1997 ; 16: 625–638.
-
(1997)
EMBO J
, vol.16
, pp. 625-638
-
-
Evans, E1
Fellows, J2
Coffer, A3
Wood, RD4
-
18
-
-
0031023182
-
Reconstitution of human excision nuclease with recombinant XPF‐ERCC1 complex
-
18 Bessho T, Sancar A, Thompson LH, Thelen MP. Reconstitution of human excision nuclease with recombinant XPF‐ERCC1 complex. J Biol Chem 1997 ; 272: 3833–3837.
-
(1997)
J Biol Chem
, vol.272
, pp. 3833-3837
-
-
Bessho, T1
Sancar, A2
Thompson, LH3
Thelen, MP4
-
19
-
-
0029843707
-
Mutational analysis of the human nucleotide excision repair gene ERCC1
-
19 Sijbers AM, van der Spek PJ, Odijk H, van den Berg J, van Duin M, Westerveld A, Jaspers NGJ, Bootsma D, Hoeijmakers JHJ. Mutational analysis of the human nucleotide excision repair gene ERCC1. Nucleic Acids Res 1996 ; 24: 3370–3380.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 3370-3380
-
-
Sijbers, AM1
van der Spek, PJ2
Odijk, H3
van den Berg, J4
van Duin, M5
Westerveld, A6
Jaspers, NGJ7
Bootsma, D8
Hoeijmakers, JHJ9
-
20
-
-
0011946570
-
A CHO mutant, UV40, that is sensitive to diverse mutagens and represents a new complementation group of mitomycin C sensitivity
-
20 Busch DB, Zdzienicka MZ, Natarajan AT, Jones NJ, Overkamp WJI, Collins A, Mitchell DL, Stefanini M, Botta E, Albert RB, Liu N, White DA, vanGool AJ, Thompson LH. A CHO mutant, UV40, that is sensitive to diverse mutagens and represents a new complementation group of mitomycin C sensitivity. Mutat Res‐DNA Repair 1996 ; 363: 209–221.
-
(1996)
Mutat Res‐DNA Repair
, vol.363
, pp. 209-221
-
-
Busch, DB1
Zdzienicka, MZ2
Natarajan, AT3
Jones, NJ4
Overkamp, WJI5
Collins, A6
Mitchell, DL7
Stefanini, M8
Botta, E9
Albert, RB10
Liu, N11
White, DA12
vanGool, AJ13
Thompson, LH14
-
21
-
-
0034714401
-
Repair of an interstrand DNA cross‐link initiated by ERCC1‐XPF repair/recombination nuclease
-
21 Kuraoka I, Kobertz WR, Ariza RR, Biggerstaff M, Essigmann JM, Wood RD. Repair of an interstrand DNA cross‐link initiated by ERCC1‐XPF repair/recombination nuclease. J Biol Chem 2000 ; 275: 26632–26636.
-
(2000)
J Biol Chem
, vol.275
, pp. 26632-26636
-
-
Kuraoka, I1
Kobertz, WR2
Ariza, RR3
Biggerstaff, M4
Essigmann, JM5
Wood, RD6
-
22
-
-
2942709644
-
The structure‐specific endonuclease Ercc1‐Xpf is required to resolve DNA interstrand cross‐link‐induced double‐strand breaks
-
22 Niedernhofer LJ, Odijk H, Budzowska M, van Drunen E, Maas A, Theil AF, de Wit J, Jaspers NGJ, Beverloo HB, Hoeijmakers JHJ, Kanaar R. The structure‐specific endonuclease Ercc1‐Xpf is required to resolve DNA interstrand cross‐link‐induced double‐strand breaks. Mol Cell Biol 2004 ; 24: 5776–5787.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 5776-5787
-
-
Niedernhofer, LJ1
Odijk, H2
Budzowska, M3
van Drunen, E4
Maas, A5
Theil, AF6
de Wit, J7
Jaspers, NGJ8
Beverloo, HB9
Hoeijmakers, JHJ10
Kanaar, R11
-
23
-
-
0025370209
-
RAD10, an excision repair gene of Saccharomyces cerevisiae, is involved in the RAD1 pathway of mitotic recombination
-
23 Schiestl RH, Prakash S. RAD10, an excision repair gene of Saccharomyces cerevisiae, is involved in the RAD1 pathway of mitotic recombination. Mol Cell Biol 1990 ; 10: 2485–2491.
-
(1990)
Mol Cell Biol
, vol.10
, pp. 2485-2491
-
-
Schiestl, RH1
Prakash, S2
-
24
-
-
0035890270
-
The structure‐specific endonuclease Ercc1‐Xpf is required for targeted gene replacement in embryonic stem cells
-
24 Niedernhofer LJ, Essers J, Weeda G, Beverloo B, de Wit J, Muijtjens M, Odijk H, Hoeijmakers JHJ, Kanaar R. The structure‐specific endonuclease Ercc1‐Xpf is required for targeted gene replacement in embryonic stem cells. EMBO J 2001 ; 20: 6540–6549.
-
(2001)
EMBO J
, vol.20
, pp. 6540-6549
-
-
Niedernhofer, LJ1
Essers, J2
Weeda, G3
Beverloo, B4
de Wit, J5
Muijtjens, M6
Odijk, H7
Hoeijmakers, JHJ8
Kanaar, R9
-
25
-
-
0347416975
-
ERCC1/XPF removes the 3′ overhang from uncapped telomeres and represses formation of telomeric DNA‐containing double minute chromosomes
-
25 Zhu XD, Niedernhofer L, Kuster B, Mann M, Hoeijmakers JHJ, de Lange T. ERCC1/XPF removes the 3′ overhang from uncapped telomeres and represses formation of telomeric DNA‐containing double minute chromosomes. Mol Cell 2003 ; 12: 1489–1498.
-
(2003)
Mol Cell
, vol.12
, pp. 1489-1498
-
-
Zhu, XD1
Niedernhofer, L2
Kuster, B3
Mann, M4
Hoeijmakers, JHJ5
de Lange, T6
-
26
-
-
27144515686
-
XPF nuclease‐dependent telomere loss and increased DNA damage in mice overexpressing TRF2 result in premature aging and cancer
-
26 Munoz P, Blanco R, Flores JM, Blasco MA. XPF nuclease‐dependent telomere loss and increased DNA damage in mice overexpressing TRF2 result in premature aging and cancer. Nat Genet 2005 ; 37: 1063–1071.
-
(2005)
Nat Genet
, vol.37
, pp. 1063-1071
-
-
Munoz, P1
Blanco, R2
Flores, JM3
Blasco, MA4
-
27
-
-
0027378895
-
Mice with DNA repair gene (ERCC‐1) deficiency have elevated levels of p53, liver nuclear abnormalities and die before weaning
-
27 McWhir J, Selfridge J, Harrison DJ, Squires S, Melton DW. Mice with DNA repair gene (ERCC‐1) deficiency have elevated levels of p53, liver nuclear abnormalities and die before weaning. Nat Genet 1993 ; 5: 217–224.
-
(1993)
Nat Genet
, vol.5
, pp. 217-224
-
-
McWhir, J1
Selfridge, J2
Harrison, DJ3
Squires, S4
Melton, DW5
-
28
-
-
12644266319
-
Disruption of mouse ERCC1 results in a novel repair syndrome with growth failure, nuclear abnormalities and senescence
-
28 Weeda G, Donker I, de Wit J, Morreau H, Janssens R, Vissers CJ, Nigg A, van Steeg H, Bootsma D, Hoeijmakers JHJ. Disruption of mouse ERCC1 results in a novel repair syndrome with growth failure, nuclear abnormalities and senescence. Curr Biol 1997 ; 7: 427–439.
-
(1997)
Curr Biol
, vol.7
, pp. 427-439
-
-
Weeda, G1
Donker, I2
de Wit, J3
Morreau, H4
Janssens, R5
Vissers, CJ6
Nigg, A7
van Steeg, H8
Bootsma, D9
Hoeijmakers, JHJ10
-
29
-
-
0031883776
-
Cells from ERCC1‐deficient mice show increased genome instability and a reduced frequency of S‐phase‐dependent illegitimate chromosome exchange but a normal frequency of homologous recombination
-
29 Melton DW, Ketchen AM, Nunez F, Bonatti‐Abbondandolo S, Abbondandolo A, Squires S, Johnson RT. Cells from ERCC1‐deficient mice show increased genome instability and a reduced frequency of S‐phase‐dependent illegitimate chromosome exchange but a normal frequency of homologous recombination. J Cell Sci 1998 ; 111 (Part 3): 395–404.
-
(1998)
J Cell Sci
, vol.111
, Issue.Part 3
, pp. 395-404
-
-
Melton, DW1
Ketchen, AM2
Nunez, F3
Bonatti‐Abbondandolo, S4
Abbondandolo, A5
Squires, S6
Johnson, RT7
-
30
-
-
3543124198
-
Deletion of the nucleotide excision repair gene Ercc1 reduces immunoglobulin class switching and alters mutations near switch recombination junctions
-
30 Schrader CE, Vardo J, Linehan E, Twarog MZ, Niedernhofer LJ, Hoeijmakers JHJ, Stavnezer J. Deletion of the nucleotide excision repair gene Ercc1 reduces immunoglobulin class switching and alters mutations near switch recombination junctions. J Exp Med 2004 ; 200: 321–330.
-
(2004)
J Exp Med
, vol.200
, pp. 321-330
-
-
Schrader, CE1
Vardo, J2
Linehan, E3
Twarog, MZ4
Niedernhofer, LJ5
Hoeijmakers, JHJ6
Stavnezer, J7
-
31
-
-
1542309071
-
Growth retardation, early death, and DNA repair defects in mice deficient for the nucleotide excision repair enzyme XPF
-
31 Tian M, Shinkura R, Shinkura N, Alt FW. Growth retardation, early death, and DNA repair defects in mice deficient for the nucleotide excision repair enzyme XPF. Mol Cell Biol 2004 ; 24: 1200–1205.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 1200-1205
-
-
Tian, M1
Shinkura, R2
Shinkura, N3
Alt, FW4
-
32
-
-
0015359373
-
Genetic analysis of sex chromosomal meiotic mutants in Drosophilia melanogaster
-
32 Baker BS, Carpenter AT. Genetic analysis of sex chromosomal meiotic mutants in Drosophilia melanogaster. Genetics 1972 ; 71: 255–286.
-
(1972)
Genetics
, vol.71
, pp. 255-286
-
-
Baker, BS1
Carpenter, AT2
-
33
-
-
0020370249
-
Mismatch repair, gene conversion, and crossing‐over in two recombination‐defective mutants of Drosophila melanogaster
-
33 Carpenter AT. Mismatch repair, gene conversion, and crossing‐over in two recombination‐defective mutants of Drosophila melanogaster. Proc Natl Acad Sci USA 1982 ; 79: 5961–5965.
-
(1982)
Proc Natl Acad Sci USA
, vol.79
, pp. 5961-5965
-
-
Carpenter, AT1
-
34
-
-
0017106265
-
Genetic controls of meiotic recombination and somatic DNA metabolism in Drosophila melanogaster
-
34 Baker BS, Boyd JB, Carpenter AT, Green MM, Nguyen TD, Ripoll P, Smith PD. Genetic controls of meiotic recombination and somatic DNA metabolism in Drosophila melanogaster. Proc Natl Acad Sci USA 1976 ; 73: 4140–4144.
-
(1976)
Proc Natl Acad Sci USA
, vol.73
, pp. 4140-4144
-
-
Baker, BS1
Boyd, JB2
Carpenter, AT3
Green, MM4
Nguyen, TD5
Ripoll, P6
Smith, PD7
-
35
-
-
16344394253
-
Structure of an XPF endonuclease with and without DNA suggests a model for substrate recognition
-
35 Newman M, Murray‐Rust J, Lally J, Rudolf J, Fadden A, Knowles PP, White MF, McDonald NQ. Structure of an XPF endonuclease with and without DNA suggests a model for substrate recognition. EMBO J 2005 ; 24: 895–905.
-
(2005)
EMBO J
, vol.24
, pp. 895-905
-
-
Newman, M1
Murray‐Rust, J2
Lally, J3
Rudolf, J4
Fadden, A5
Knowles, PP6
White, MF7
McDonald, NQ8
-
36
-
-
23444443484
-
Structural and functional analyses of an archaeal XPF/Rad1/Mus81 nuclease: asymmetric DNA binding and cleavage mechanisms
-
36 Nishino T, Komori K, Ishino Y, Morikawa K. Structural and functional analyses of an archaeal XPF/Rad1/Mus81 nuclease: asymmetric DNA binding and cleavage mechanisms. Structure (Camb) 2005 ; 13: 1183–1192.
-
(2005)
Structure (Camb)
, vol.13
, pp. 1183-1192
-
-
Nishino, T1
Komori, K2
Ishino, Y3
Morikawa, K4
-
37
-
-
0032588241
-
A relationship between a DNA‐repair/recombination nuclease family and archaeal helicases
-
37 Sgouros J, Gaillard PH, Wood RD. A relationship between a DNA‐repair/recombination nuclease family and archaeal helicases. Trends Biochem Sci 1999 ; 24: 95–97.
-
(1999)
Trends Biochem Sci
, vol.24
, pp. 95-97
-
-
Sgouros, J1
Gaillard, PH2
Wood, RD3
-
38
-
-
0033105094
-
Conserved domains in DNA repair proteins and evolution of repair systems
-
38 Aravind L, Walker DR, Koonin EV. Conserved domains in DNA repair proteins and evolution of repair systems. Nucleic Acids Res 1999 ; 27: 1223–1242.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 1223-1242
-
-
Aravind, L1
Walker, DR2
Koonin, EV3
-
39
-
-
0034661711
-
Common fold in helix–hairpin–helix proteins
-
39 Shao X, Grishin NV. Common fold in helix–hairpin–helix proteins. Nucleic Acids Res 2000 ; 28: 2643–2650.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 2643-2650
-
-
Shao, X1
Grishin, NV2
-
40
-
-
0034682545
-
Crystal structure of the holliday junction DNA in complex with asingle RuvA tetramer
-
40 Ariyoshi M, Nishino T, Iwasaki H, Shinagawa H, Morikawa K. Crystal structure of the holliday junction DNA in complex with asingle RuvA tetramer. Proc Natl Acad Sci USA 2000 ; 97: 8257–8262.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 8257-8262
-
-
Ariyoshi, M1
Nishino, T2
Iwasaki, H3
Shinagawa, H4
Morikawa, K5
-
41
-
-
0037112792
-
Solution structure and DNA‐binding properties of the C‐terminal domain of UvrC from E. coli
-
41 Singh S, Folkers GE, Bonvin AMJJ, Boelens R, Wechselberger R, Niztayev A, Kaptein R. Solution structure and DNA‐binding properties of the C‐terminal domain of UvrC from E. coli. EMBO J 2002 ; 21: 6257–6266.
-
(2002)
EMBO J
, vol.21
, pp. 6257-6266
-
-
Singh, S1
Folkers, GE2
Bonvin, AMJJ3
Boelens, R4
Wechselberger, R5
Niztayev, A6
Kaptein, R7
-
42
-
-
23844548251
-
Crystal structure and DNA binding functions of ERCC1, a subunit of the DNA structure‐specific endonuclease XPF‐ERCC1
-
42 Tsodikov OV, Enzlin JH, Scharer OD, Ellenberger T. Crystal structure and DNA binding functions of ERCC1, a subunit of the DNA structure‐specific endonuclease XPF‐ERCC1. Proc Natl Acad Sci USA 2005 ; 102: 11236–11241.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 11236-11241
-
-
Tsodikov, OV1
Enzlin, JH2
Scharer, OD3
Ellenberger, T4
-
43
-
-
28844480409
-
The structure of the human ERCC1/XPF interaction domains reveals a complementary role for the two proteins in nucleotide excision repair
-
43 Tripsianes K, Folkers G, Ab E, Das D, Odijk H, Jaspers NGJ, Hoeijmakers JHJ, Kaptein R, Boelens R. The structure of the human ERCC1/XPF interaction domains reveals a complementary role for the two proteins in nucleotide excision repair. Structure 2005 ; 13: 1849–1858.
-
(2005)
Structure
, vol.13
, pp. 1849-1858
-
-
Tripsianes, K1
Folkers, G2
Ab, E3
Das, D4
Odijk, H5
Jaspers, NGJ6
Hoeijmakers, JHJ7
Kaptein, R8
Boelens, R9
-
44
-
-
0037090816
-
The active site of the DNA repair endonuclease XPF‐ERCC1 forms a highly conserved nuclease motif
-
44 Enzlin JH, Scharer OD. The active site of the DNA repair endonuclease XPF‐ERCC1 forms a highly conserved nuclease motif. EMBO J 2002 ; 21: 2045–2053.
-
(2002)
EMBO J
, vol.21
, pp. 2045-2053
-
-
Enzlin, JH1
Scharer, OD2
-
45
-
-
0032530097
-
Mapping of interaction domains between human repair proteins ERCC1 and XPF
-
45 de Laat WL, Sijbers AM, Odijk H, Jaspers NGJ, Hoeijmakers JHJ. Mapping of interaction domains between human repair proteins ERCC1 and XPF. Nucleic Acids Res 1998 ; 26: 4146–4152.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 4146-4152
-
-
de Laat, WL1
Sijbers, AM2
Odijk, H3
Jaspers, NGJ4
Hoeijmakers, JHJ5
-
46
-
-
23344452570
-
Biophysical characterization of the interaction domains and mapping of the contact residues in the XPF‐ERCC1 complex
-
46 Choi YJ, Ryu KS, Ko YM, Chae YK, Pelton JG, Wemmer DE, Choi BS. Biophysical characterization of the interaction domains and mapping of the contact residues in the XPF‐ERCC1 complex. J Biol Chem 2005 ; 280: 28644–28652.
-
(2005)
J Biol Chem
, vol.280
, pp. 28644-28652
-
-
Choi, YJ1
Ryu, KS2
Ko, YM3
Chae, YK4
Pelton, JG5
Wemmer, DE6
Choi, BS7
-
47
-
-
0033532342
-
Action of DNA repair endonuclease ERCC1/XPF in living cells
-
47 Houtsmuller AB, Rademakers S, Nigg AL, Hoogstraten D, Hoeijmakers JHJ, Vermeulen W. Action of DNA repair endonuclease ERCC1/XPF in living cells. Science 1999 ; 284: 958–961.
-
(1999)
Science
, vol.284
, pp. 958-961
-
-
Houtsmuller, AB1
Rademakers, S2
Nigg, AL3
Hoogstraten, D4
Hoeijmakers, JHJ5
Vermeulen, W6
-
48
-
-
16044373761
-
Xeroderma pigmentosum group F caused by a defect in a structure‐specific DNA repair endonuclease
-
48 Sijbers AM, de Laat WL, Ariza RR, Biggerstaff M, Wei YF, Moggs JG, Carter KC, Shell BK, Evans E, de Jong MC, Rademakers S, de Rooij J, Jaspers NGJ, Hoeijmakers JHJ, Wood RD. Xeroderma pigmentosum group F caused by a defect in a structure‐specific DNA repair endonuclease. Cell 1996 ; 86: 811–822.
-
(1996)
Cell
, vol.86
, pp. 811-822
-
-
Sijbers, AM1
de Laat, WL2
Ariza, RR3
Biggerstaff, M4
Wei, YF5
Moggs, JG6
Carter, KC7
Shell, BK8
Evans, E9
de Jong, MC10
Rademakers, S11
de Rooij, J12
Jaspers, NGJ13
Hoeijmakers, JHJ14
Wood, RD15
-
49
-
-
12444336898
-
X‐ray and biochemical anatomy of an archaeal XPF/Rad1/Mus81 family nuclease: similarity between its endonuclease domain and restriction enzymes
-
49 Nishino T, Komori K, Ishino Y, Morikawa K. X‐ray and biochemical anatomy of an archaeal XPF/Rad1/Mus81 family nuclease: similarity between its endonuclease domain and restriction enzymes. Structure (Camb) 2003 ; 11: 445–457.
-
(2003)
Structure (Camb)
, vol.11
, pp. 445-457
-
-
Nishino, T1
Komori, K2
Ishino, Y3
Morikawa, K4
-
50
-
-
11144225798
-
Cooperation of the N‐terminal helicase and C‐terminal endonuclease activities of archaeal Hef protein in processing stalled replication forks
-
50 Komori K, Hidaka M, Horiuchi T, Fujikane R, Shinagawa H, Ishino Y. Cooperation of the N‐terminal helicase and C‐terminal endonuclease activities of archaeal Hef protein in processing stalled replication forks. J Biol Chem 2004 ; 279: 53175–53185.
-
(2004)
J Biol Chem
, vol.279
, pp. 53175-53185
-
-
Komori, K1
Hidaka, M2
Horiuchi, T3
Fujikane, R4
Shinagawa, H5
Ishino, Y6
-
51
-
-
13844275962
-
Mass spectrometry of peptides and proteins
-
51 Wysocki VH, Resing KA, Zhang QF, Cheng GL. Mass spectrometry of peptides and proteins. Methods 2005 ; 35: 211–222.
-
(2005)
Methods
, vol.35
, pp. 211-222
-
-
Wysocki, VH1
Resing, KA2
Zhang, QF3
Cheng, GL4
-
52
-
-
0034495733
-
Aromatic clusters: a determinant of thermal stability of thermophilic proteins
-
52 Kannan N, Vishveshwara S. Aromatic clusters: a determinant of thermal stability of thermophilic proteins. Protein Eng 2000 ; 13: 753–761.
-
(2000)
Protein Eng
, vol.13
, pp. 753-761
-
-
Kannan, N1
Vishveshwara, S2
-
53
-
-
0022419375
-
Aromatic–aromatic interaction: a mechanism of protein structure stabilization
-
53 Burley SK, Petsko GA. Aromatic–aromatic interaction: a mechanism of protein structure stabilization. Science 1985 ; 229: 23–28.
-
(1985)
Science
, vol.229
, pp. 23-28
-
-
Burley, SK1
Petsko, GA2
-
55
-
-
0000243829
-
PROCHECK: a program to check the stereochemical quality of protein structures
-
55 Laskowski RA, MacArthur MW, Moss DS, Thornton JM. PROCHECK: a program to check the stereochemical quality of protein structures. J Appl Crystallogr 1993 ; 26: 283–291.
-
(1993)
J Appl Crystallogr
, vol.26
, pp. 283-291
-
-
Laskowski, RA1
MacArthur, MW2
Moss, DS3
Thornton, JM4
-
56
-
-
0030339738
-
AQUA and PROCHECK‐NMR: programs for checking the quality of protein structures solved by NMR
-
56 Laskowski RA, Rullmann JAC, MacArthur MW, Kaptein R, Thornton JM. AQUA and PROCHECK‐NMR: programs for checking the quality of protein structures solved by NMR. J Biomol NMR 1996 ; 8: 477–486.
-
(1996)
J Biomol NMR
, vol.8
, pp. 477-486
-
-
Laskowski, RA1
Rullmann, JAC2
MacArthur, MW3
Kaptein, R4
Thornton, JM5
-
57
-
-
0027170187
-
Evidence for a repair enzyme complex involving Ercc1 and complementing activities of Ercc4, Ercc11 and Xeroderma‐pigmentosum group‐F
-
57 Van Vuuren AJ, Appeldoorn E, Odijk H, Yasui A, Jaspers NGJ, Bootsma D, Hoeijmakers JHJ. Evidence for a repair enzyme complex involving Ercc1 and complementing activities of Ercc4, Ercc11 and Xeroderma‐pigmentosum group‐F. EMBO J 1993 ; 12: 3693–3701.
-
(1993)
EMBO J
, vol.12
, pp. 3693-3701
-
-
Van Vuuren, AJ1
Appeldoorn, E2
Odijk, H3
Yasui, A4
Jaspers, NGJ5
Bootsma, D6
Hoeijmakers, JHJ7
-
58
-
-
0029843707
-
Mutational analysis of the human nucleotide excision repair gene ERCC1
-
58 Sijbers AM, van der Spek PJ, Odijk H, van den Berg J, van Duin M, Westerveld A, Jaspers NGJ, Bootsma D, Hoeijmakers JHJ. Mutational analysis of the human nucleotide excision repair gene ERCC1. Nucleic Acids Res 1996 ; 24: 3370–3380.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 3370-3380
-
-
Sijbers, AM1
van der Spek, PJ2
Odijk, H3
van den Berg, J4
van Duin, M5
Westerveld, A6
Jaspers, NGJ7
Bootsma, D8
Hoeijmakers, JHJ9
-
59
-
-
0031815218
-
Complete restoration of normal DNA repair characteristics in group F xeroderma pigmentosum cells by over‐expression of transfected XPF cDNA
-
59 Yagi T, Matsumura Y, Sato M, Nishigori C, Mori T, Sijbers AM, Takebe H. Complete restoration of normal DNA repair characteristics in group F xeroderma pigmentosum cells by over‐expression of transfected XPF cDNA. Carcinogenesis 1998 ; 19: 55–60.
-
(1998)
Carcinogenesis
, vol.19
, pp. 55-60
-
-
Yagi, T1
Matsumura, Y2
Sato, M3
Nishigori, C4
Mori, T5
Sijbers, AM6
Takebe, H7
-
60
-
-
0031027248
-
A low content of ERCC1 and a 120 kDa protein is a frequent feature of group F xeroderma pigmentosum fibroblast cells
-
60 Yagi T, Wood RD, Takebe H. A low content of ERCC1 and a 120 kDa protein is a frequent feature of group F xeroderma pigmentosum fibroblast cells. Mutagenesis 1997 ; 12: 41–44.
-
(1997)
Mutagenesis
, vol.12
, pp. 41-44
-
-
Yagi, T1
Wood, RD2
Takebe, H3
-
61
-
-
0027217085
-
Co‐correction of the ERCC1, ERCC4 and xeroderma pigmentosum group F DNA repair defects in vitro
-
61 Biggerstaff M, Szymkowski DE, Wood RD. Co‐correction of the ERCC1, ERCC4 and xeroderma pigmentosum group F DNA repair defects in vitro. EMBO J 1993 ; 12: 3685–3692.
-
(1993)
EMBO J
, vol.12
, pp. 3685-3692
-
-
Biggerstaff, M1
Szymkowski, DE2
Wood, RD3
-
62
-
-
0035865927
-
Activity of individual ERCC1 and XPF subunits in DNA nucleotide excision repair
-
62 Gaillard PH, Wood RD. Activity of individual ERCC1 and XPF subunits in DNA nucleotide excision repair. Nucleic Acids Res 2001 ; 29: 872–879.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 872-879
-
-
Gaillard, PH1
Wood, RD2
-
63
-
-
0032101832
-
ERCC1 mutations in UV‐sensitive Chinese hamster ovary (CHO) cell lines
-
63 Hayashi T, Takao M, Tanaka K, Yasui A. ERCC1 mutations in UV‐sensitive Chinese hamster ovary (CHO) cell lines. Mutat Res‐DNA Repair 1998 ; 407: 269–276.
-
(1998)
Mutat Res‐DNA Repair
, vol.407
, pp. 269-276
-
-
Hayashi, T1
Takao, M2
Tanaka, K3
Yasui, A4
-
64
-
-
0033587586
-
Domain mapping of the DNA binding, endonuclease, and ERCC1 binding properties of the human DNA repair protein XPF
-
64 McCutchen‐Maloney SL, Giannecchini CA, Hwang MH, Thelen MP. Domain mapping of the DNA binding, endonuclease, and ERCC1 binding properties of the human DNA repair protein XPF. Biochemistry 1999 ; 38: 9417–9425.
-
(1999)
Biochemistry
, vol.38
, pp. 9417-9425
-
-
McCutchen‐Maloney, SL1
Giannecchini, CA2
Hwang, MH3
Thelen, MP4
-
65
-
-
11144225798
-
Cooperation of the N‐terminal helicase and C‐terminal endonuclease activities of Archaeal Hef protein in processing stalled replication forks
-
65 Komori K, Hidaka M, Horiuchi T, Fujikane R, Shinagawa H, Ishino Y. Cooperation of the N‐terminal helicase and C‐terminal endonuclease activities of Archaeal Hef protein in processing stalled replication forks. J Biol Chem 2004 ; 279: 53175–53185.
-
(2004)
J Biol Chem
, vol.279
, pp. 53175-53185
-
-
Komori, K1
Hidaka, M2
Horiuchi, T3
Fujikane, R4
Shinagawa, H5
Ishino, Y6
-
67
-
-
0347722841
-
Heteronuclear multidimensional NMR experiments for the structure determination of proteins in solution employing pulsed field gradients
-
67 Sattler M, Schleucher J, Griesinger C. Heteronuclear multidimensional NMR experiments for the structure determination of proteins in solution employing pulsed field gradients. Prog Nucl Magn Reson Spectrosc 1999 ; 34: 93–158.
-
(1999)
Prog Nucl Magn Reson Spectrosc
, vol.34
, pp. 93-158
-
-
Sattler, M1
Schleucher, J2
Griesinger, C3
-
68
-
-
0029400480
-
NMRPipe: a multidimensional spectral processing system based on UNIX pipes
-
68 Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A. NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 1995 ; 6: 277–293.
-
(1995)
J Biomol NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F1
Grzesiek, S2
Vuister, GW3
Zhu, G4
Pfeifer, J5
Bax, A6
-
69
-
-
0004040543
-
SPARKY 3
-
69 Goddard TD, Kneller DG. SPARKY 3. San Francisco: University of California, 2001.
-
(2001)
-
-
Goddard, TD1
Kneller, DG2
-
70
-
-
34249765651
-
NMRView: A computer program for the visualization and analysis of NMR data
-
70 Johnson BA, Blevins RA. NMRView: A computer program for the visualization and analysis of NMR data. J Biomol NMR 1994: 603–614.
-
(1994)
J Biomol NMR
, pp. 603-614
-
-
Johnson, BA1
Blevins, RA2
-
71
-
-
0029338320
-
Improved sensitivity of HSQC spectra of exchanging protons at short interscan delays using a new fast HSQC (FHSQC) detection scheme that avoids water saturation
-
71 Mori S, Abeygunawardana C, Johnson MO, van Zijl PCM. Improved sensitivity of HSQC spectra of exchanging protons at short interscan delays using a new fast HSQC (FHSQC) detection scheme that avoids water saturation. J Magn Reson Ser B 1995 ; 108: 94–98.
-
(1995)
J Magn Reson Ser B
, vol.108
, pp. 94-98
-
-
Mori, S1
Abeygunawardana, C2
Johnson, MO3
van Zijl, PCM4
-
72
-
-
0033003335
-
Protein backbone angle restraints from searching a database for chemical shift and sequence homology
-
72 Cornilescu G, Delaglio F, Bax A. Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J Biomol NMR 1999 ; 13: 289–302.
-
(1999)
J Biomol NMR
, vol.13
, pp. 289-302
-
-
Cornilescu, G1
Delaglio, F2
Bax, A3
-
73
-
-
0019327003
-
A two‐dimensional nuclear Overhauser enhancement (2D NOE) experiment for the elucidation of complete proton–proton cross‐relaxation networks in biological macromolecules
-
73 Kumar A, Ernst RR, Wüthrich K. A two‐dimensional nuclear Overhauser enhancement (2D NOE) experiment for the elucidation of complete proton–proton cross‐relaxation networks in biological macromolecules. Biochem Biophys Res Commun 1980 ; 95: 1–6.
-
(1980)
Biochem Biophys Res Commun
, vol.95
, pp. 1-6
-
-
Kumar, A1
Ernst, RR2
Wüthrich, K3
-
74
-
-
0036308102
-
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA
-
74 Herrmann T, Güntert P, Wüthrich K. Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J Mol Biol 2002 ; 319: 209–227.
-
(2002)
J Mol Biol
, vol.319
, pp. 209-227
-
-
Herrmann, T1
Güntert, P2
Wüthrich, K3
-
75
-
-
0031576336
-
Torsion angle dynamics for NMR structure calculation with the new program DYANA
-
75 Güntert P, Mumenthaler C, Wüthrich K. Torsion angle dynamics for NMR structure calculation with the new program DYANA. JMol Biol 1997 ; 273: 283–298.
-
(1997)
JMol Biol
, vol.273
, pp. 283-298
-
-
Güntert, P1
Mumenthaler, C2
Wüthrich, K3
-
76
-
-
0027383637
-
A Calculation strategy for the structure determination of symmetrical dimers by H‐1‐NMR
-
76 Nilges M. A Calculation strategy for the structure determination of symmetrical dimers by H‐1‐NMR. Proteins 1993 ; 17: 297–309.
-
(1993)
Proteins
, vol.17
, pp. 297-309
-
-
Nilges, M1
-
77
-
-
24744447497
-
Altered specificity in DNA binding by the lac repressor: a mutant lac headpiece that mimics the gal repressor
-
77 Salinas RK, Folkers GE, Bonvin AMJJ, Das D, Boelens R, Kaptein R. Altered specificity in DNA binding by the lac repressor: a mutant lac headpiece that mimics the gal repressor. Chembiochem 2005 ; 6: 1628–1637.
-
(2005)
Chembiochem
, vol.6
, pp. 1628-1637
-
-
Salinas, RK1
Folkers, GE2
Bonvin, AMJJ3
Das, D4
Boelens, R5
Kaptein, R6
-
78
-
-
0034213458
-
Solution structure of the MEF2A‐DNA complex: structural basis for the modulation of DNA bending and specificity by MADS‐box transcription factors
-
78 Huang K, Louis JM, Donaldson L, Lim FL, Sharrocks AD, Clore GM. Solution structure of the MEF2A‐DNA complex: structural basis for the modulation of DNA bending and specificity by MADS‐box transcription factors. EMBO J 2000 ; 19: 2615–2628.
-
(2000)
EMBO J
, vol.19
, pp. 2615-2628
-
-
Huang, K1
Louis, JM2
Donaldson, L3
Lim, FL4
Sharrocks, AD5
Clore, GM6
-
80
-
-
9944221417
-
Validation of protein structures derived by NMR spectroscopy
-
80 Spronk CAEM, Nabuurs SB, Krieger E, Vriend G, Vuister GW. Validation of protein structures derived by NMR spectroscopy. Prog Nucl Magn Reson Spectrosc 2004 ; 45: 315–337.
-
(2004)
Prog Nucl Magn Reson Spectrosc
, vol.45
, pp. 315-337
-
-
Spronk, CAEM1
Nabuurs, SB2
Krieger, E3
Vriend, G4
Vuister, GW5
-
81
-
-
3543012707
-
Crystallography and NMR system: a new software suite for macromolecular structure determination
-
81 Brünger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse‐Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL. Crystallography and NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr 1998 ; 54 (Part 5): 905–921.
-
(1998)
Acta Crystallogr D Biol Crystallogr
, vol.54
, Issue.Part 5
, pp. 905-921
-
-
Brünger, AT1
Adams, PD2
Clore, GM3
DeLano, WL4
Gros, P5
Grosse‐Kunstleve, RW6
Jiang, JS7
Kuszewski, J8
Nilges, M9
Pannu, NS10
Read, RJ11
Rice, LM12
Simonson, T13
Warren, GL14
-
82
-
-
21044449889
-
RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank
-
82 Nederveen AJ, Doreleijers JF, Vranken W, Miller Z, Spronk CAEM, Nabuurs SB, Güntert P, Livny M, Markley JL, Nilges M, Ulrich EL, Kaptein R, Bonvin AMJJ. RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank. Proteins 2005 ; 59: 662–672.
-
(2005)
Proteins
, vol.59
, pp. 662-672
-
-
Nederveen, AJ1
Doreleijers, JF2
Vranken, W3
Miller, Z4
Spronk, CAEM5
Nabuurs, SB6
Güntert, P7
Livny, M8
Markley, JL9
Nilges, M10
Ulrich, EL11
Kaptein, R12
Bonvin, AMJJ13
-
83
-
-
0028834886
-
The folding and stability of titin immunoglobulin‐like modules, with implications for the mechanism of elasticity
-
83 Politou AS, Thomas DJ, Pastore A. The folding and stability of titin immunoglobulin‐like modules, with implications for the mechanism of elasticity. Biophys J 1995 ; 69: 2601–2610.
-
(1995)
Biophys J
, vol.69
, pp. 2601-2610
-
-
Politou, AS1
Thomas, DJ2
Pastore, A3
|