AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR

Journal of Biomolecular NMR

Volumn 8, Issue 4, 1996, Pages 477-486

  Laskowski, Roman A ^a   Rullmann, J Antoon C ^b   MacArthur, Malcolm W ^a   Kaptein, Robert ^b   Thornton, Janet M ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

^b UTRECHT UNIVERSITY   (Netherlands)

Author keywords

Computer software; Protein geometry; Restraint analysis; Structure validation

Indexed keywords

BACTERIAL PROTEIN; DNA BINDING PROTEIN; HISTONE LIKE PROTEIN HU, BACTERIA; HISTONE-LIKE PROTEIN HU, BACTERIA; PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER PROGRAM; EVALUATION; GENETICS; METHODOLOGY; MOLECULAR GENETICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROTEIN SECONDARY STRUCTURE; QUALITY CONTROL; REPRODUCIBILITY; SOLUTION AND SOLUBILITY;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; DNA-BINDING PROTEINS; EVALUATION STUDIES; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; PROTEIN STRUCTURE, SECONDARY; PROTEINS; QUALITY CONTROL; REPRODUCIBILITY OF RESULTS; SOFTWARE; SOLUTIONS;

EID: 0030339738     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF00228148     Document Type: Article

References (22)

1. Adobe Systems Inc. (1985) PostScript Language Reference Manual, Addison-Wesley, Reading, MA, U.S.A.
2. Allen, F.H. and Johnson, O. (1991) Acta Crystallogr., B47, 62-67.
3. Bernstein, F.C., Koetzle, T.F., Williams, G.J.B., Meyer Jr., E.F., Brice, M.D., Rodgers, J.R., Kennard, O., Shimanouchi, T. and Tasumi, M. (1977) J. Mol. Biol., 112, 535-542.
4. Brünger, A.T. (1992) X-PLOR v. 3.1. A system for X-ray crystallography und NMR, Yale University Press, New Haven, CT, U.S.A.
5. Chazin, W.J. (1992) Curr. Opin. Biotechnol., 3, 326-332.
6. Clore, G.M., Robien, M.A. and Gronenborn, A.M. (1993) J. Mol. Biol., 231, 82-102.
7. Gonzalez, C., Rullmann, J.A.C., Bonvin, A.M.J.J., Boelens, R. and Kaptein, R. (1991) J. Magn. Reson., 91, 659-664.
8. Güntert, P., Braun, W. and Wüthrich, K. (1991) J. Mol. Biol., 217, 517-530.
9. Havel, T.F. and Wüthrich, K. (1984) Bull. Math. Biol., 46, 673-698.
10. Havel, T.F. (1991) Prog. Biophys. Mol. Biol., 56, 43-78.
11. Hoch, J.C. (1991) In Computational Aspects of the Study of Biological Macromolecules by Nuclear Magnetic Resonance Spectroscopy (Ed., Hoch, J.C.), Plenum Press, New York, NY, U.S.A., pp. 253-267.
12. Kabsch, W. and Sander, C (1983) Biopolymers, 22, 2577-2637.
13. Koradi, R., Billeter, M. and Wüthrich, K. (1996) J. Mol. Graph., 14, 51-55.
14. Laskowski, R.A., MacArthur, M.W., Moss, D.S. and Thornton, J.M. (1993) J. Appl. Crystallogr., 26, 283-291.
15. MacArthur, M.W. and Thornton, J.M. (1993) Proteins, 17, 232-251.
16. MacArthur, M.W., Laskowski, R.A. and Thornton, J.M. (1994) Curr. Opin. Struct. Biol., 4, 731-737.
17. Morris, A.L., MacArthur, M.W., Hutchinson, E.G. and Thornton, J.M. (1992) Proteins, 12, 345-364.
18. Ramachandran, G.N., Ramakrishnan, C. and Sasisekharan, V. (1963) J. Mol. Biol., 7, 95-99.
19. Sutcliffe, M.J. (1993) In NMR of Macromolecules. A Practical Approach (Ed., Roberts, G.C.K.), IRL Press, Oxford, U.K., pp. 359-392.
20. Thomas, P.D., Basus, V.J. and James, T.L. (1991) Proc. Natl. Acad. Sci. USA, 88, 1237-1241.
21. Vis, H., Mariani, M., Vorgias, C.E., Wilson, K.S., Kaptein, R. and Boelens, R. (1995) J. Mol. Biol., 254, 692-703.
22. Zhao, D. and Jardetzky, O. (1994) J. Mol. Biol., 239, 601-607.