Biophysical characterization of the interaction domains and mapping of the contact residues in the XPF-ERCC1 complex

Journal of Biological Chemistry

Volumn 280, Issue 31, 2005, Pages 28644-28652

  Choi, Yun Jeong ^a   Ryu, Kyoung Seok ^a   Ko, Yun Mi ^a   Chae, Young Kee ^b   Pelton, Jeffrey G ^c   Wemmer, David E ^c   Choi, Byong Seok ^a  

^a Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

^b Sejong University   (South Korea)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CATALYSIS; CELL CULTURE; DIMERS; DNA; FILTRATION; GELS;

BINDING DOMAIN; BIOPHYSICAL CHARACTERIZATION; DNA CLEAVAGE; HETERODIMERS;

CELLS;

DIMER; EXCISION REPAIR CROSS COMPLEMENTING PROTEIN 1; PROTEIN; UNCLASSIFIED DRUG; XERODERMA PIGMENTOSUM GROUP F PROTEIN;

ALPHA HELIX; ARTICLE; BINDING AFFINITY; BINDING SITE; BIOPHYSICS; CARBOXY TERMINAL SEQUENCE; CATALYSIS; COMPLEX FORMATION; CROSS LINKING; CRYSTAL STRUCTURE; DIMERIZATION; DNA CLEAVAGE; ESCHERICHIA COLI; EXCISION REPAIR; GEL FILTRATION CHROMATOGRAPHY; HYDROPHOBICITY; MOLECULAR MODEL; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; PROTEIN STABILITY; ULTRACENTRIFUGATION;

AMINO ACID SEQUENCE; BINDING SITES; CLONING, MOLECULAR; DNA-BINDING PROTEINS; ENDONUCLEASES; ESCHERICHIA COLI; HUMANS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PEPTIDE FRAGMENTS; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN DENATURATION; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

ESCHERICHIA COLI;

EID: 23344452570     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M501083200     Document Type: Article

References (43)

1. Benhamou, S., and Sarasin, A. (2000) Mutat. Res. 462, 149-158
2. de Laat, W. L., Appeldoorn, E., Jaspers, N. G. J., and Hoeijmakers, J. H. J. (1998) J. Biol. Chem. 273, 7835-7842
3. Matsunaga, T., Mu, D., Park, C.-H., Reardon, J. T., and Sancar, A. (1995) J. Biol. Chem. 270, 20862-20869
4. Sijbers, A. M., de Laat, W. L., Ariza, R. R., Biggerstaff, M., Wei, Y.-F., Moggs, J. G., Carter, K. C., Shell, B. K., Evans, E., de Jong, M. C., Rademakers, S., de Rooij, J., Jaspers, N. G. J., Hoeijmakers, J. H. J., and Wood, R. D. (1996) Cell 86, 811-822
5. O'Donovan, A., Davies, A. A., Moggs, J. G., West, S. C., and Wood, R. D. (1994) Nature 371, 432-435
6. Huang, J. C., Svoboda, D. L., Reardon, J. T., and Sancar, A. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 3664-3668
7. Moggs, J. G., Yarema, K. J., Essigmann, J. M., and Wood, R. D. (1996) J. Biol. Chem. 271, 7177-7186
8. Mu, D., Park, C.-H., Matsunaga, T., Hsu, D. S., Reardon, J. T., and Sancar, A. (1995) J. Biol. Chem. 270, 2415-2418
9. Aboussekhra, A., Biggerstaff, M., Shivji, M. K. K., Vilpo, J. A., Moncollin, V., Podust, V. N., Protic, M., Hubscher, U., Egly, J.-M., and Wood, R. D. (1995) Cell 80, 859-868
10. Friedberg, E. C., Walker, G. C., and Siede, W. (1995) DNA Repair and Mutagenesis, American Society for Microbiology Press, Washington, D. C.
11. de Laat, W. L., Jaspers N. G., and Hoeijmakers, J. H. (1999) Genes Dev. 13, 768-785
12. Bessho, T., Sancar, A., Thompson, L. H., and Thelen, M. P. (1997) J. Biol. Chem. 272, 3833-3837
13. McCutchen-Maloney, S. L., Giannecchini, C. A., Hwang, M. H., and Thelen, M. P. (1999) Biochemistry 38, 9417-9425
14. Biggerstaff, M., Szymkowski, D. E., and Wood, R. D. (1993) EMBO J. 12, 3685-3692
15. van Vuuren, A. J., Aplleldoorn, E. Odijk, H. Yasui, A., Jaspers, N. G. J. Bootsma, D., and Hoeijmaker, H. J. (1993) EMBO J. 12, 3693-3701
16. Yagi, T., Wood, R. D., and Takebe, H. (1997) Mutagenesis, 12, 41-44
17. Kaliraman, V., Mullen, J. R., Fricke, W. M., Bastin-Shanower, S. A. and Brill, S. J. (2001) Genes Dev. 15, 2730-2740
18. Bardwell, L., Cooper, A. J., and Friedberg, E. C. (1992) Mol. Cell. Biol. 12, 3041-3049
19. de Laat, W. L., Sijbers, A. M., Odijk, H., Jaspers, N. G., and Hoeijmakers, J. H. (1998) Nucleic Acids Res. 26, 4146-4152
20. Sijbers, A. M., van der Spek, P. J., Odijk, H., van den Berg, J., van Duin, M., Westerveld, A., Jaspers, N. G., Bootsma, D., and Hoeijmakers, J. H. (1996) Nucleic Acids Res. 24, 3370-3380
21. Gaillard, P. H., and Wood, R. D. (2001) Nucleic Acids Res. 29, 872-879
22. Creighton, T. E. (1997) Biol. Chem. 378, 731-744
23. Suenaga, M., Ohmae, H., Tsuji, S., Itoh, T., and Nishimura, O. (1998) Biotechnol. Appl. Biochem. 28, 119-124
24. Clore, G. M., and Gronenborn, A. M. (1994) Methods Enzymol. 239, 349-363
25. Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) J. Biomol. NMR 6, 277-293
26. Takahashi, H., Nakanishi, T., Kami, K., Arata, Y., and Shimada, I. (2000)Nat. Struct. Biol. 7, 220-223
27. Rupee, E., and Freeman, R. (1995) J. Magn. Reson. A 117, 246-256
28. Stapleton, D., Balan, I., Pawson, T., and Sicheri, F. (1999) Nat. Struct. Biol. 6, 44-49
29. Sali, A., and Blundell, T. L. (1993) J. Mol. Biol. 234, 779-815
30. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
31. Morris, G. M., Goodsell, D. S., Halliday, R. S., Huey, R., Hart, W. E., Belew, R. K., and Olson, A. J. (1998) J. Comput. Chem. 19, 1639-1662
32. Newman, M., Murray-Rust, J., Lally, J., Rudolf, J., Fadden, A., Knowles, P. P., White, M. F., and McDonald, N. Q. (2005) EMBO J. 24, 895-905
33. Moolenaar, G. F., Franken, K. L. M. C., Dijkstra, D. M., Thomas-Oates, J. E., Visse, R., van de Putte, P., and Goosen, N. (1995) J. Biol. Chem. 270, 30508-30515
34. Bardwell, A. J., Bardwell, L., Johnson, D. K., and Friedberg, E. C. (1993) Mol. Microbiol. 8, 1177-1188
35. Wishart, D. S., Watson, M. S., Boyko, R. F., and Sykes, B. D. (1997) J. Biomol. NMR 10, 329-336
36. Wüthrich, K. (2000) Nat. Struct. Biol. 7, 188-189
37. Doherty, A. J., Serpell, L. C., and Ponting, C. P. (1996) Nucleic Acids Res. 24, 2488-2497
38. Aravind, L., Walker, D. R., and Koonin, E. V. (1999) Nucleic Acids Res. 27, 1223-1242
39. Shao, X., and Grishin, N. V. (2000) Nucleic Acids Res. 28, 2643-2650
40. Singh, S., Folkers, G. E., Bonvin, A. M., Boelens, R., Wechselberger, R., Niztayev, A., and Kaptein, R. (2002) EMBO J. 21, 6257-6266
41. Sijbers, A. M., van Voorst Vader, P. C., Snoek, J. W., Raams, A., Jaspers, N. G., and Kleijer, W. J. (1998) J. Invest. Dermatol. 110, 832-836
42. van Duin, M., Vredeveldt, G., Mayne, L. V., Odijk, H., Vermeulen, W., Klein, B., Weeda, G., Hoeijmakers, J. H., Bootsma, D., and Westerveld, A. (1989) Mutat. Res. 217, 83-92
43. Yagi, T., Matsumura, Y., Sato, M., Nishigori, C., Mori, T., Sijbers, A. M., and Takebe, H. (1998) Carcinogenesis 19, 55-60