Engineering the proteins of D-amino acid oxidases by a rational and a directed evolution approach

Current Protein and Peptide Science

Volumn 8, Issue 6, 2007, Pages 600-618

  Pollegioni, Loredano ^a   Sacchi, Silvia ^a   Caldinelli, Laura ^a   Boselli, Angelo ^a   Pilone, Mirella S ^a   Piubelli, Luciano ^a   Molla, Gianluca ^a  

^a UNIVERSITY OF INSUBRIA   (Italy)

Author keywords

Crystallization; DAAO genes; Dimerization; FAD cofactor; Mutagenesis

Indexed keywords

2 OXOACID; AMINO ACID; AMMONIA; CHIMERIC PROTEIN; DEXTRO AMINO ACID OXIDASE; DEXTRO ASPARTIC ACID; DEXTRO GLUTAMIC ACID; FLAVOPROTEIN; IMINO ACID; OLIGOMER; OXYGEN; QUERCETIN;

AMINO ACID SEQUENCE; BIOTECHNOLOGY; CHEMICAL MODIFICATION; CRYSTALLIZATION; DEHYDROGENATION; DIMERIZATION; ENZYME ACTIVITY; ENZYME BINDING; ENZYME ENGINEERING; ENZYME IMMOBILIZATION; ENZYME KINETICS; ENZYME SPECIFICITY; ENZYME STABILITY; ENZYME STRUCTURE; HUMAN; HYDROLYSIS; HYDROPHOBICITY; IN VITRO STUDY; ISOMER; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OLIGOMERIZATION; OXIDATION REDUCTION REACTION; PH; PROTEIN INTERACTION; REVIEW; SITE DIRECTED MUTAGENESIS; SPECTROSCOPY; STEADY STATE; SWINE; TEMPERATURE; YEAST; ANIMAL; CHEMISTRY; DIRECTED MOLECULAR EVOLUTION; GENETICS; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; PROTEIN ENGINEERING; STRUCTURE ACTIVITY RELATION;

SUIDAE;

AMINO ACID SEQUENCE; ANIMALS; D-AMINO-ACID OXIDASE; DIRECTED MOLECULAR EVOLUTION; ENZYME STABILITY; HUMANS; MOLECULAR SEQUENCE DATA; PROTEIN ENGINEERING; STRUCTURE-ACTIVITY RELATIONSHIP; SUBSTRATE SPECIFICITY;

EID: 38349169149     PISSN: 13892037     EISSN: None     Source Type: Journal    
DOI: 10.2174/138920307783018677     Document Type: Review

References (99)

1. Curti, B., Ronchi, S. and Pilone Simonetta, M. (1992) in Chemistry and Biochemistry of Flavoenzymes III (Müller, F., Ed.), pp. 69-94, CRC Press, Boca Raton.
2. Pilone, M.S. (2000) Cell. Mol. Life Sci., 57, 1732-1747.
3. Pollegioni, L., Piubelli, L., Sacchi, S., Pilone, M.S. and Molla, G. ( 2007) Cell. Mol. Life Sci., 64, 1373-1394.
4. Schell, M.J., Molliver, M.E. and Snyder, S.H. (1995) Proc. Natl. Acad. Sci. USA, 92, 3948-3952.
5. Chumakov, I., Blumenfeld M., Guerassimenko, O., Cavaree, L., Palicio, M. and Abderrahim, H. (2002). Proc. Natl. Acad. Sci. USA, 99, 13675-13680.
6. Krebs, H.A. (1935) Biochem. J., 29, 1620-1644.
7. Mattevi, A., Vanoni, M.A., Todone, F., Rizzi, M., Teolyakov, A., Coda, A., Bolognesi, M. and Curti, B. (1996) Proc. Natl. Acad. Sci. USA, 93, 7496-7501.
8. Mizutani, H., Miyahara, I., Hirotsu, K., Nishina, Y., Shiga, K., Setoyama, C. and Miura, R. (1996) J. Biochem. (Tokyo), 120, 14-17.
9. Umhau, S., Pollegioni, L., Molla G.; Diederichs, K., Welte, W., Pilone, M.S. and Ghisla, S. (2000) Proc. Natl. Acad. Sci. USA, 97, 12463-12468.
10. Kawazoe, T., Tsuge, H., Pilone, M.S. and Fukui, K. (2006), Protein Sci., 15, 2708-2717.
11. Massey, V. and Hemmerich, P. (1980), Biochem. Soc. Trans., 8, 246-257.
12. Casalin, P., Pollegioni, L., Curti, B. and Pilone, M.S. (1991) Eur. J. Biochem., 197, 513-517.
13. Massey, V. and Ganther, H. (1965) Biochemistry, 4, 1161-1173.
14. Molla, G., Sacchi, S., Bernasconi, M., Pilone, M.S., Fukui, K. and Pollegion., L. (2006) PEBS Lett., 580, 2358-2364.
15. Massey, V. and Curti, B. (1966) J. Biol. Chem., 241, 3417-3423
16. Pollegioni, L. and Pilone, M.S. (1996) Arch. Biochem. Biophys., 332, 58-62.
17. Van den Berghe-Snorek, S. and Stankovich, M.T. (1985) J. Biol. Chem., 260, 3373-3379.
18. Pollegioni, L., Porrini, D., Molla, G. and Pilone, M.S. (2000) Eur. J. Biochem., 267, 6624-6632.
19. Pistorius, E.K. and Voss, H. (1977) Biochim. Biophys. Acta, 481, 395-406.
20. Settembre, E.C., Dorrestein, P.C., Park, J.H., Augustine, A.M., Begley, T.P. and Ealick, S.E. (2003) Biochemistry, 42, 2971-2981.
21. Mörtl, M., Diederichs, K., Welte, W., Molla, G., Motteran, L., Andriolo, G., Pilone, M.S. and Pollegioni, L. (2004) J. Biol. Chem., 279, 29718-29727.
22. Faotto, L., Pollegioni, L., Ceciliani, F., Ronchi, S. and Pilone, M.S. (1995) Biotechnol. Lett., 17, 193-198.
23. Wierenga, R.K., Drenth, J. and Schulz, G.E. (1983) J. Mol. Biol., 167, 725-739.
24. Campaner, S., Pollegioni, L., Ross, B.D, and Pilone, M.S. (1998) Biochem. J., 330, 615-621.
25. Pilone Simonetta,,M., Pollegioni, L., Gasalin, P., Curti, B. and Ronchi, S. (1989) Eur. J. Biochem., 180, 199-204.
26. Szwajcer, E. and Mosbach, K. (1985) Biotechnol. Lett., 7, 1-7.
27. Kubicek-Pranz, E.M. and Rohr, M. (1985) J. Appl., Biochem., 7, 104-113.
28. Pollegioni, L., Butò, S., Tischer, W., Ghisla, S. and Pilone, M.S. (1993) Biochem. Mol. Biol. Int., 31, 709-717.
29. Schrader, T. and Andreesen, J.R. (1996) Appl. Microbiol. Biotechnol., 45, 458-464.
30. Sarower, M.G., Okada, S. and Abe, H. (2003) Arch. Biochem. Biophys., 420, 121-129.
31. Sarower, M.G., Okada, S. and Abe, H. (2005) Comp. Biochem. Physiol., 140B, 417-425.
32. Gabler, M., Hensel, M. and Fischer, L. (2000) Enzyme Microb. Technol., 27, 605-611.
33. Tishkov, V.I. and Khoronenkova, S.V. (2005) Biochemistry (Moscow), 70, 40-54.
34. Pollegioni, L., Falbo, A. and Pilone, M.S. (1992) Biochim. Biophys. Acta, 1120, 11-16.
35. Pollegioni, L., Diederichs, K., Molla, G., Umhau, S., Welte, W., Ghisla, S. and Pilone, M.S. (2002) J. Mol. Biol., 324, 535-546.
36. Fisher, G.H. (1998) EXS, 85, 109-118.
37. Dixon, M. and Kleppe, K. (1965) Biochim. Biophys. Acta, 96, 368-382.
38. Pollegioni, L., Caldinelli, L., Molla, G., Sacchi, S. and Pilone, M.S. (2004) Biotechnol. Progr., 20, 467-473.
39. Fitzpatrick, P.F. (2004) Bioorg. Chem., 32, 125-139.
40. Massey, V. and Gibson, Q.H. (1964) Fed. Proc., 23, 18-29.
41. Yagi, K. (1971) Adv. Enzymol., 34, 41-78.
42. Porter, D.J., Voet, J.G. and Bright, H.J. (1977) J. Biol. Chem., 252, 4464-4473.
43. Fitzpatrick, P.F. and Massey, V. (1982) J. Biol. Chem., 257, 9958-9962.
44. Pollegioni, L., Langkau, B., Tischer, W., Ghisla, S. and Pilone, M.S. (1993) J. Biol. Chem., 268, 13850-13857.
45. Kendrew, J.C., Bodo, G., Dintzis, H.M. Parrish, R.G., Wyckoff, H. and Phillips, D.C. (1958) Nature, 181, 662-666.
46. Dym, O. and Eisenberg, D. (2001) Protein Sci., 10, 1712-1728.
47. Rossmann, M.G., Moras, D., and Olsen, K.W. (1974) Nature, 250, 194-199.
48. Setoyama, C., Nishina, Y., Tamaoki, H, Mizutani, H., Miyahara, I., Hirotsu, K., Shiga, K. and Miura, R. (2002) J. Biochem. (Tokyo), 131, 59-69.
49. Watanabe, F., Fukui, K., Momoi; K. and Miyake, Y. (1989) J. Biochem. (Tokyo), 105, 1024-1029.
50. Miyano, M., Fukui, K., Watanabe, F., Takahashi, S., Tada, M., Kanashiro, M. and, Miyake, Y. (1991) J. Biochem. (Tokyo), 109, 171-177.
51. Raibekas, A.A. and Massey, V. (1997) J. Biol. Chem., 272, 22248-22252.
52. Lin, L.L., Wang, W.C., Ju, S.S., Chien, H.R. and Hsu, W.H. (1999) FEMS Microbiol. Lett., 176, 443-448.
53. Ju, S.S., Lin, L.L., Wang, W.C. and Hsu, W.H. (1998) FEBS Lett., 436, 119-122.
54. Piubelli, L., Caldinelli, L., Molla, G., Pilone, M.S. and Pollegioni, L. (2002) FEBS Lett., 526, 43-48.
55. Piubelli, L., Molla, G., Caldinelli, L., Pilone, M.S. and Pollegioni, L. (2003) Protein Eng., 16, 1063-1069.
56. Caldinelli, L., Molla, G., Pilone, M.S. and Pollegioni, L. (2006) FEBS J., 273, 504-512.
57. Nishina, Y., Sato, K., Miura, R. and Shiga, K. (1995) J. Biochem (Tokyo), 118, 614-620.
58. Molla, G., Porrini, D., Job, V., Motteran, L., Vegezzi, C., Campaner, S., Pilone, M.S. and Pollegioni, L. (2000) J. Biol. Chem., 275, 24715-24721.
59. Todone, F., Vanoni, M.A., Mozzarelli, A., Bolognesi, M., Coda, A., Curti, B. and Mattevi, A. (1997) Biochemistry, 36, 5853-5860.
60. Vanoni, M.A., Cosma, A., Mazzeo, D., Mattevi, A., Todone, F. and Curti, B. (1997) Biochemistry, 36, 5624-5632.
61. Setoyama, C., Nishina, Y., Mizutani, H., Miyahara, I., Hirotsu, K., Kamiya, N., Shiga, K. and Miura, R. (2006) J. Biochem. (Tokyo), 139, 873-879.
62. Pollegioni, L., Fukui, K. and Massey, V. (1994) J. Biol. Chem., 269, 31666-31673.
63. Boselli, A., Sacchi, S., Job, V., Pilone, M.S. and Pollegioni, L. ( 2002) Eur. J. Biochem., 269, 4762-4771.
64. Sacchi, S., Boselli, A., Job, V., Pilone, M.S., Pollegioni, L. and Molla, G. (2006) Enz. Microb. Tech., 38, 795-802.
65. Nishino, T., Massey, V.,and Williams, C.H. (1980) J. Biol. Chem., 255, 3610-3616.
66. Gadda, G., Negri, A. and Pilone, M.S. (1994) J. Biol. Chem., 269, 17809-17814.
67. Fitzpatrick, P.F. and Massey, V. (1983) J. Biol. Chem., 258, 9700-9705.
68. Rudie, N.G., Porter, D.J. and Bright, H.J. (1980) J. Biol. Chem., 255, 498-508.
69. Harris, C.M., Molla, G., Pilone, M.S. and Pollegioni, L. (1999) J. Biol. Chem., 274, 36233-36240.
70. Pollegioni, L., Harris, C.M., Molla, G., Pilone, M.S. and Ghisla, S. ( 2001) FEBS Lett., 507, 323-326.
71. Harris, C. M., Pollegioni, L. and Ghisla, S. (2001) Eur. J. Biochem., 268, 5504-5520.
72. Boselli, A., Piubelli, L., Molla, G., Sacchi, S., Pilone, M.S., Ghisla, S. and Pollegioni, L. (2004) Biochim. Biophys. Acta, 1702, 19-32.
73. Boselli, A., Piubelli, L., Molla, G., Pilone, M.S., Pollegioni, L. and Sacchi, S. (2007) Biochimie, 89, 360-368.
74. Sacchi, S., Lorenzi, S., Molla, G,, Pilone, M.S., Rossetti, C. and Pollegioni, L. (2002) J. Biol. Chem., 277, 27510-27516.
75. Pollegioni, L., Iametti, S., Fessas, D., Caldinelli, L., Piubelli, L., Barbiroli, A., Pilone, M.S. and Bononfi, F. (2003) Protein Sci., 12, 1018-1029.
76. Betancor, L., Hidalgo, A., Fernandez-Lorente, G, Mateo, C., Rodriquez, V., Fuentes, M., Lopez-Gallego, F., Fernandez-Lafuente, R. and Guisan, J.M. (2003) Biotechnol. Prog., 19, 784-788.
77. Dib, I., Slavica, A., Riethorst, W. and Nidetzky, B. (2006) Biotechnol. Bioeng., 94, 645-654.
78. Montes, F.J., Battaner, E., Catalan, J. and Galan, M.A. (1995) Proc. Biochem., 30, 217-224.
79. Caldinelli, L., Iametti, S., Barbiroli, A., Bonomi, F., Piubelli, L., Ferranti, P., Picariello, G., Pilone, M.S. and Pollegioni, L. (2004) J. Biol. Chem., 279, 28426-28434.
80. Pilone, M.S., Pollegioni, L. and Butò, S, (1992) Biotechnol. Appl. Biochem., 16, 252-262.
81. López-Gallego, F., Betancor, L., Hidalgo, A., Alonso, N., Fernandez-Lorente, G., Guisan, J.M. and Fernandez-Lafuente, R. (2005) Enzyme Microb. Technol., 37, 750-756.
82. Bakke, M. and Kajiyama, N. (2004) Appl. Biochem. Biotechnol., 112, 123-131.
83. Bakke, M., Setoyama, C., Miura, R. and Kajiyama, N. (2006) Biotechnol. Bioeng., 93, 1023-1027.
84. Ju, S.S., Lin, L.L., Chien, H.R. and Hsu, W.H. (2000) FEMS Microbiol. Lett., 186, 215-219.
85. Khang, Y.H., Kim, I.W., Hah, Y.R., Hwangbo, J.H. and Kang, K.K. (2003) Biotechnol. Bioeng., 82, 480-488.
86. Nahalka, J. and Nidetzky, B. (2007) Biotechnol. Bioeng., 97, 454-461.
87. Mei, G., Di Venere, A., Rosalo, N. and Finazzi-Agrò, A. (2005) FEBS J., 272, 16-27.
88. Pollegioni, L. Ceciliani, F., Curti, B., Ronchi, S. and Pilone, M.S. ( 1995) Biochem. J., 310, 577-583.
89. Miura, R., Setoyama, C., Nishina, Y., Shiga, K., Mizutani, H., Miyahara, I. and Hirotsu, K. (1997) J. Biochem. (Tokyo), 122, 825-833.
90. Sacchi, S., Pollegioni, L., Pilone, M.S. and Rossetti, C. (1998) Biotechnol. Tech., 12, 149-153.
91. Gandolfi, I., Palla, G., Delprato, L., de Nisco, F., Marchelli, R. and Salvadori, C. (1990) J. Food Sci., 57, 377-379.
92. Negri, A., Ceciliani, F., Tedeschi, G., Simonic, T. and Ronchi, S. ( 1992) J. Biol. Chem., 267, 1186-11871.
93. Sacchi, S., Rosini, E., Molla, G., Pilone, M.S. and Pollegioni, L. ( 2004) Protein Eng. Des. Sel., 17, 517-525.
94. Caligiuri, A., D'Arrigo, P., Rosini, E., Tessaro, D., Molla, G., Servi, S. and Pollegioni, L. (2006) Adv. Synth. Catal., 348, 2183-2190.
95. Stocker, A.; Hecht, H.J. and Buckmann A.F. (1996) Eur. J. Biochem., 238, 519-528.
96. Pollegioni, L., Campaner, S., Raibekas, A.A. and Pilone, M.S. (1997) Arch. Biochem. Biophys., 343, 1-5.
97. Raibekas, A.A., Fukui, K. and Massey, V. (1999) Proc. Natl. Acad. Sci. USA, 97, 3089-3093.
98. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. and Higgins, D.G. (1997) Nucleic Acids Res., 25, 4876-4882.
99. Yagi, K., Nishikimi, M., Takai, A. and Oishi, N. (1973). Biochim. Biophys. Acta, 321, 64-71.