Crystal structure of D-amino acid oxidase: A case of active site mirror-image convergent evolution with flavocytochrome b2

Proceedings of the National Academy of Sciences of the United States of America

Volumn 93, Issue 15, 1996, Pages 7496-7501

  Mattevi, Andrea ^a   Vanoni, Maria Antonietta ^b   Todone, Flavia ^a   Rizzi, Menico ^a   Teplyakov, Alex ^c   Coda, Alessandro ^a,e   Bolognesi, Martino ^a,d   Curti, Bruno ^b,e  

^a UNIVERSITY OF PAVIA   (Italy)

^b UNIVERSITY OF MILAN   (Italy)

^c DESY   (Germany)

^d UNIVERSITY OF GENOA   (Italy)

^e Ctro Interuniversitario Stud D

Author keywords

Density averaging; Flavoenzyme; Redox catalysis; Stereospecificity

Indexed keywords

4 HYDROXYBENZOATE 3 MONOOXYGENASE; BENZOIC ACID; DEXTRO AMINO ACID OXIDASE; LACTATE DEHYDROGENASE (CYTOCHROME); MONOMER;

ANIMAL TISSUE; ARTICLE; CRYSTAL STRUCTURE; CRYSTALLIZATION; ENANTIOMER; ENZYME ACTIVE SITE; ENZYME ISOLATION; ENZYME MECHANISM; ENZYME STRUCTURE; KIDNEY; NONHUMAN; PRIORITY JOURNAL; REDUCTION; STEREOCHEMISTRY; SWINE;

4-HYDROXYBENZOATE-3-MONOOXYGENASE; AMINO ACID SEQUENCE; ARGININE; BINDING SITES; CATALYSIS; COMPUTER GRAPHICS; CRYSTALLOGRAPHY, X-RAY; D-AMINO-ACID OXIDASE; EVOLUTION; L-LACTATE DEHYDROGENASE; L-LACTATE DEHYDROGENASE (CYTOCHROME); MACROMOLECULAR SUBSTANCES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, SECONDARY;

EID: 0029839452     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.93.15.7496     Document Type: Article

References (45)

1. Krebs, H. A. (1935) Biochem. J. 29, 1620-1625.
2. Curti, B., Ronchi, S. & Pilone Simonetta, M. (1992) in Chemistry and Biochemistry of Flavoenzymes, ed. Müller F. (CRC, Boca Raton, FL), pp. 69-94.
3. Ronthi, S., Minchiotti, L., Galliano, M., Curti, B., Swenson, R. P., Williams, C. H., Jr., & Massey, V. (1982) J. Biol. Chem. 257, 8824-8829.
4. Momoi, K., Fukui, K., Watanabe, F. & Miyake, Y. (1988) FEBS Lett. 238, 180-185.
5. Bright, H. J. & Porter, D. J. T. (1975) Enzymes 12, 421-441.
6. Dixon, M. & Kleppe, K. (1965) Biochim. Biophys. Acta 96, 368-382.
7. Negri, A., Massey, V. & Williams, C. H., Jr. (1987) J. Biol. Chem. 262, 10026-10034.
8. D'Aniello, A., D'Onofrio, G., Pischetola, M., D'Aniello, G., Vetere, A., Petrucelli, L. & Fisher, G. H. (1993) J. Biol. Chem. 268, 26941-26949.
9. Mor, A., Amiche, M. & Nicolas, P. (1992) Trends Biochem. Sci. 17, 481-485.
10. Man, E. H., Sandhouse, M., Burg, J. & Fisher, G. H. (1983) Science 220, 1407-1408.
11. Curti, B., Ronchi, S., Branzoli, U., Ferri, G. & Williams, C. H., Jr. (1973) Biochim. Biophys. Acta 327, 231-266.
12. Bolognesi, M., Ungaretti, L., Curti, B. & Ronchi, S. (1978) J. Biol. Chem. 253, 7513-7514.
13. Collaborative Computational Project Number 4 (1994) Acta Cryslallogr. D 50, 60-767.
14. Sheldrick, O. M. (1991) in Isomorphous Replacement and Anomalous Scattering: Proceeding of the CCP4 Study Weekend 25-26 January 1991, eds. Wolf, W., Evans, P. R. & Leslie, A. G. W. (Science and Engineering research Lab., Daresbury Lab., Warrington, U.K.), pp. 23-38.
15. Tong, L. & Rossmann, M. G. (1990) Acta Crystallogr. A 46, 783-792.
16. Vellieux, F. M. D. V., Hunt, J. F., Roy, S. & Read, R. J. (1995) J. Appl. Crystallogr. 28, 347-351.
17. Jones, T. A., Zou, J. Y., Cowan, S.W. & Kjeldgaard, M. (1991) Acta Crystallogr. A 47, 110-119.
18. Tronrud, D. E., Ten Eyck, L. F. & Matthews, B. W. (1987) Acta Crystallogr. A 43, 489-501.
19. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291.
20. Brünger, A. T. (1992) Nature (London) 355, 472-475.
21. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.
22. Wierenga, R. K., Drenth, J. & Schulz, G.E. (1983) J. Mol. Biol. 167, 725-739.
23. Torri Tarelli, G., Vanoni, M. A., Negri, A. & Curti, B. (1990) J. Biol. Chem. 34, 21242-21246.
24. Schreuder, H. A., Prick, P. A. J., Wierenga, P. K., Vriend, G., Wilson, K. S., Hol, W. G. J. & Drenth, J. (1989) J. Mol. Biol. 208, 679-696.
25. Vrielink, A., Lloyd, L. F. & Blow, D. M. (1991) J. Mol. Biol. 219, 533-554.
26. Hecht, H. J., Kalisz, H. M., Hendle, J., Schmid, R. D. & Schomburg, D. (1993) J. Mol. Biol. 229, 153-172.
27. Holm, L. & Sander, C. (1993) J. Mol. Biol. 233, 123-138.
28. Ghisla, S. & Massey, V. (1986) Biochem. J. 239, 1-12.
29. Entsch, B. & van Berkel, W. J. H. (1995) FASEB J. 9, 476-483.
30. Manstein, D. J., Massey, V., Ghisla, S. & Pai, E. F. (1988) Biochemistry 27, 2300-2303.
31. Kleywegt, G. J. & Jones, T. A. (1994) Acta Crystallogr. D 50, 178-185.
32. Ronchi, S., Galliano, M., Minchiotti, L., Curti, B., Rudie, N. G., Porter, D. J. T. & Bright, H. J. (1980) J. Biol. Chem. 255, 6044-6050.
33. Ferti, C., Curti, B., Pilone Simonetta, M., Ronchi, S., Galliano, M. & Minchiotti, L. (1981) Eur. J. Biochem. 119, 553-557.
34. Gadda, G., Negri, A. & Pilone, M. S. (1994) J. Biol. Chem. 269, 17809-17814.
35. Li, J., Vrielink, A., Brick, P. & Blow, D. (1993) Biochemistry 32, 11507-11515.
36. Denu, J. M. & Fitzpatrick, P. F. (1994) Biochemistry 33, 4001-4007.
37. Walsh, C. T., Krodel, E., Massey, V. & Abels, R. H. (1973) J. Biol. Chem. 248, 1946-1951.
38. Hersh, L. B. & Schuman Jorns, M. (1975) J. Biol. Chem. 250, 8728-8732.
39. Pollegioni, L., Fukui, K. & Massey, V. (1994) J. Biol. Chem. 269, 31666-31673.
40. Faotto, L., Pollegioni, L., Ceciliani, F., Ronchi, S. & Pilone, M. S. (1995) Biotechnol. Lett. 17, 193-198.
41. Isolai, T., Ono, H., Ishitani, Y., Kojo, H., Veday, Y., Kohsaka, M. (1994) J. Biochem. (Tokyo) 108, 1063-1069.
42. Ghisla, S. & Massey, V. (1989) Eur. J. Biochem. 181, 1-17.
43. Massey, V. (1994) J. Biol. Chem. 269, 22459-22462.
44. Xia, Z. X. & Mathews, F. S. (1990) J. Mol. Biol. 212, 837-863.
45. Lederer, F. (1992) Protein Sci. 1, 540-548