Catalytic and structural characteristics of carp hepatopancreas D-amino acid oxidase expressed in Escherichia coli

Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology

Volumn 140, Issue 3, 2005, Pages 417-425

  Sarower, Mohammed Golam ^a   Okada, Shigeru ^a   Abe, Hiroki ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

Carp; Cyprinus carpio; D Alanine; D Amino acid; D Amino acid oxidase; Expression; Hepatopancreas; Three dimensional model

Indexed keywords

DEXTRO AMINO ACID OXIDASE;

ALPHA HELIX; AMINO ACID SEQUENCE; ARTICLE; BETA CHAIN; CARBOXY TERMINAL SEQUENCE; CARP; CATALYSIS; COMPARATIVE STUDY; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME DEGRADATION; ENZYME PURIFICATION; ENZYME STABILITY; ENZYME SUBSTRATE; ESCHERICHIA COLI; HEPATOPANCREAS; MOLECULAR MODEL; NONHUMAN; NUCLEOTIDE SEQUENCE; PH MEASUREMENT; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN SECONDARY STRUCTURE; STRUCTURAL HOMOLOGY; THERMOSTABILITY; THREE DIMENSIONAL IMAGING;

ANIMALIA; CYPRINUS CARPIO; ESCHERICHIA COLI; RHODOSPORIDIUM TORULOIDES; SUS SCROFA;

EID: 13444261006     PISSN: 10964959     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cbpc.2004.11.006     Document Type: Article

References (43)

1. B. Curti, S. Ronchi, and M.S. Pilone d- and l-amino acid oxidase F. Müller Chemistry and Biochemistry of Flavoenzymes vol. 3 1992 CRC Press London 69 94
2. A. D'Aniello, G. D'Onofrio, M. Pischetola, G. D'Aniello, A. Vetere, L. Petrucelli, and G.H. Fisher Biological role of d-amino acid oxidase and d-aspartate oxidase J. Biol. Chem. 268 1993 26,941 26,949
3. C. de Duve, and P. Baudhuin Peroxisomes (microbodies and related particles) Physiol. Rev. 46 1966 323 357
4. M. Dixon, and K. Kleppe Amino acid oxidase: II. Specificity, competitive inhibition and reaction sequence Biochim. Biophys. Acta 96 1965 368 382
5. L. Faotto, L. Pollegioni, F. Ceciliani, S. Ronchi, and M.S. Pilone The primary structure of d-amino acid oxidase from Rhodotorula gracilis Biotechnol. Lett. 17 1995 193 198
6. N. Guex, and M.C. Peitsch SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling Electrophoresis 18 1997 2714 2723
7. E.W. Hafner, and D. Wellner Demonstration of imino acids as products of the reactions catalyzed by d- and l-amino acid oxidase Proc. Natl. Acad. Sci. U. S. A. 68 1971 987 991
8. C.M. Harris, G. Molla, M.S. Pilone, and L. Pollegioni Studies on the reaction mechanism of Rhodotorula gracilis d-amino acid oxidase J. Biol. Chem. 274 1999 36233 36240
9. S. Kawamoto, M. Kobayashi, A. Tanaka, and S. Fukui Production of d-amino acid oxidase by Candida tropicalis J. Ferment. Technol. 55 1977 13 18
10. G. Kishore, and C.S. Vaidyanathan Purification and properties of d-amino acid oxidase of Aspergillus niger Indian J. Biochem. 13 1976 216 222
11. R. Konno, and Y. Yasumura d-Amino acid oxidase and its physiological function Int. J. Biochem. 24 1992 519 524
12. H.A. Krebs Metabolism of amino acids: III. Deamination of amino acids Biochem. J. 29 1935 1620 1644
13. H.Y. Lee, and W.S. Chu Purification and characterization of a d-amino acid oxidase active against cephalosporin C from Rhodosporidium toruloides Process Biochem. 33 1998 461 467
14. V. Massey, and H. Ganther On the interpretation of the absorption spectra of flavoproteins with special reference to the d-amino acid oxidase Biochemistry 4 1965 1161 1173
15. V. Massey, G. Palmer, and R. Bennet The purification and some properties of d-amino acid oxidase Biochim. Biophys. Acta 48 1961 1 9
16. 2 Proc. Natl. Acad. Sci. U. S. A. 93 1996 7496 7501
17. R. Miura, C. Setoyama, Y. Nishina, K. Shiga, I. Miyahara, H. Mizutani, and K. Hirotsu Porcine kidney d-amino acid oxidase: the three-dimensional structure and its catalytic mechanism based on the enzyme-substrate complex model J. Mol. Catal. 12B 2001 43 52
18. H. Mizutani, I. Miyahara, K. Hirotsu, Y. Nishina, K. Shiga, C. Setoyama, and R. Miura Three-dimensional structure of porcine kidney d-amino acid oxidase at 3.0 Å resolution J. Biochem. (Tokyo) 120 1996 14 17
19. H. Mizutani, I. Miyahara, K. Hirotsu, Y. Nishina, K. Shiga, C. Setoyama, and R. Miura Three-dimensional structure of the purple intermediate of porcine kidney d-amino acid oxidase. Optimization of the oxidative half-reaction through alignment of the product with reduced flavin J. Biochem. (Tokyo) 128 2000 73 81
20. G. Molla, D. Porrini, V. Job, L. Motteran, C. Vegezzi, S. Campaner, M.S. Pilone, and L. Pollegioni Role of arginine 285 in the active site of Rhodotorula gracilis d-amino acid oxidase: a site-directed mutagenesis study J. Biol. Chem. 275 2000 24,715 24,721
21. Y. Nagata, T. Shimojo, and T. Akino d-Amino acid oxidase in mouse liver-II Comp. Biochem. Physiol., B 91 1988 503 504
22. Y. Nohara, J. Suzuki, T. Kinoshita, and M. Watanabe Creatinine inhibits d-amino acid oxidase Nephron 91 2002 281 285
23. M.C. Peitsch ProMod and Swiss-model: internet-based tools for automated comparative protein modeling Biochem. Soc. Trans. 24 1996 274 279
24. M.S. Pilone d-Amino acid oxidase: new findings Cell. Mol. Life Sci. 57 2000 1732 1747
25. M.S. Pilone, M.A. Vanoni, and B. Curti d-Amino acid oxidase activity in the yeast Rhodotorula gracilis FEMS Microbiol. Lett. 15 1982 27 31
26. M.S. Pilone, M.A. Vanoni, and P. Casalin Purification and properties of d-amino acid oxidase, an inducible flavoenzyme from Rhodotorula gracilis Biochim. Biophys. Acta 914 1987 136 142
27. M.S. Pilone, L. Pollegioni, P. Casalin, B. Curti, and S. Ronchi Properties of d-amino acid oxidase from Rhodotorula gracilis Eur. J. Biochem. 180 1989 199 204
28. L. Pollegioni, A. Falbo, and M.S. Pilone Specificity and kinetics of Rhodotorula gracilis d-amino acid oxidase Biochim. Biophys. Acta 1120 1992 11 16
29. L. Pollegioni, S. Butò, W. Tischer, S. Ghisla, and M.S. Pilone Characterization of d-amino acid oxidase from Trigonopsis variabilis Biochem. Mol. Biol. Int. 31 1993 709 717
30. L. Pollegioni, B. Langkau, W. Tischer, S. Ghisla, and M.S. Pilone Kinetic mechanism of d-amino acid oxidase from Rhodotorula gracilis and Trigonopsis variabilis J. Biol. Chem. 268 1993 13,850 13,857
31. L. Pollegioni, K. Fukui, and V. Massey Studies on the kinetic mechanism of pig kidney d-amino acid oxidase by site-directed mutagenesis of tyrosine 224 and tyrosine 228 J. Biol. Chem. 269 1994 31,666 31,673
32. L. Pollegioni, K. Diederichs, G. Molla, S. Umhau, W. Welte, S. Ghisla, and M.S. Pilone Yeast d-amino acid oxidase: structural basis of its catalytic properties J. Mol. Biol. 324 2002 535 546
33. D.J.T. Pörter, J.G. Voet, and H.J. Bright Mechanistic features of the d-amino acid oxidase reaction studied by double stopped flow spectrophotometry J. Biol. Chem. 252 1977 4464 4473
34. M.G. Sarower, T. Matsui, and H. Abe Distribution and characteristics of d-amino acid and d-aspartate oxidases in fish tissues J. Exp. Zool. 295 2003 151 159
35. M.G. Sarower, S. Okada, and H. Abe Molecular characterization of d-amino acid oxidase from common carp Cyprinus carpio and its induction with exogenous free d-alanine Arch. Biochem. Biophys. 420 2003 121 129
36. T. Schräder, and J.R. Andreesen Evidence for the functional importance of Cys298 in d-amino acid oxidase from Trigonopsis variabilis Eur. J. Biochem. 218 1993 735 744
37. T. Schräder, and J.R. Andreesen Properties and chemical modification of d-amino acid oxidase of Trigonopsis variabilis Arch. Microbiol. 165 1996 41 47
38. S. Sentheshanmuganathan, and W.J. Nickerson Transaminase and d-amino acid oxidase of Trigonopsis variabilis J. Gen. Microbiol. 27 1962 465 471
39. F. Todone, M.A. Vanoni, A. Mozzarelli, M. Bolognesi, A. Coda, B. Curti, and A. Mattevi Active site plasticity in d-amino acid oxidase: a crystallographic analysis Biochemistry 36 1997 5853 5860
40. H. Tojo, K. Horiike, K. Shiga, Y. Nishina, H. Watari, and T. Yamano Self-association mode of a flavoenzyme d-amino acid oxidase from hog kidney: I. Analysis of apparent weight-average molecular weight data for the apoenzyme in terms of models J. Biol. Chem. 260 1985 12,607 12,614
41. S. Umhau, L. Pollegioni, G. Molla, K. Diederichs, W. Welte, M.S. Pilone, and S. Ghisla The X-ray structure of flavin-dependent substrate dehydrogenation Proc. Natl. Acad. Sci. U. S. A. 97 2000 12,463 12,468
42. H. Wolosker, S. Blackshaw, and S.H. Snyder Serine racemase: a glial enzyme synthesizing d-serine to regulate glutamate-N-methyl-d-aspartate neurotransmission Proc. Natl. Acad. Sci. U. S. A. 96 1999 13,409 13,414
43. H. Yurimoto, T. Hasegawa, Y. Sakai, and N. Kato Characterization and high-level production of d-amino acid oxidase in Candida boidinii Biosci. Biotechnol. Biochem. 65 2001 627 633