RNABC: Forward kinematics to reduce all-atom steric clashes in RNA backbone

Journal of Mathematical Biology

Volumn 56, Issue 1-2, 2008, Pages 253-278

  Wang, Xueyi ^a   Kapral, Gary ^b   Murray, Laura ^b   Richardson, David ^b   Richardson, Jane ^b   Snoeyink, Jack ^a  

^a UNIVERSITY OF NORTH CAROLINA   (United States)

^b DUKE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

All atom contacts; Automated rebuilding; Kinematic chain; RNA backbone adjustment; RNA backbone conformation; RNA crystallography; S motifs; Steric clash; Structure validation

Indexed keywords

RNA;

ARTICLE; BIOLOGY; CHEMISTRY; COMPUTER PROGRAM; CONFORMATION; METHODOLOGY; X RAY CRYSTALLOGRAPHY;

COMPUTATIONAL BIOLOGY; CRYSTALLOGRAPHY, X-RAY; NUCLEIC ACID CONFORMATION; RNA; SOFTWARE;

EID: 36448943965     PISSN: 03036812     EISSN: 14321416     Source Type: Journal    
DOI: 10.1007/s00285-007-0082-x     Document Type: Article

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