-
1
-
-
0029980972
-
Active barnase variants with completely random hydrophobic cores
-
Axe D. D., Foster N. W., Fersht A. R. Active barnase variants with completely random hydrophobic cores. Proc. Natl Acad. Sci. USA. 93:1996;5590-5594.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 5590-5594
-
-
Axe, D.D.1
Foster, N.W.2
Fersht, A.R.3
-
2
-
-
0028265282
-
The low-temperature crystal structure of the pure-spermine form of Z-DNA reveals binding of a spermine molecule in the minor groove
-
Bancroft D., Williams L. D., Rich A., Egli M. The low-temperature crystal structure of the pure-spermine form of Z-DNA reveals binding of a spermine molecule in the minor groove. Biochemistry. 33:1994;1073-1086.
-
(1994)
Biochemistry
, vol.33
, pp. 1073-1086
-
-
Bancroft, D.1
Williams, L.D.2
Rich, A.3
Egli, M.4
-
3
-
-
0025759275
-
The protein-folding problem: The native fold determines packing, but does packing determine the native fold?
-
Behe M. J., Lattman E. E., Rose G. D. The protein-folding problem: the native fold determines packing, but does packing determine the native fold? Proc. Natl Acad. Sci. USA. 88:1991;4195-4199.
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 4195-4199
-
-
Behe, M.J.1
Lattman, E.E.2
Rose, G.D.3
-
5
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein F. C., Koetzle T. F., Williams G. J. B., Meyer E. F., Brice M. D., Rodgers J. R., Kennard O., Shimanouchi T., Tasumi M. The Protein Data Bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 112:1977;535-542.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
Meyer, E.F.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
6
-
-
0027249641
-
De novo protein design: From molten globules to native-like states
-
Betz S. F., Raleigh D. P., DeGrado W. F. De novo protein design: from molten globules to native-like states. Curr. Opin. Struct. Biol. 3:1993;601-610.
-
(1993)
Curr. Opin. Struct. Biol.
, vol.3
, pp. 601-610
-
-
Betz, S.F.1
Raleigh, D.P.2
Degrado, W.F.3
-
8
-
-
0020441466
-
Crystal structures of Escherichia coli and Lactobacillus casei dihydrofolate reductase refined at 1.7 Å resolution. I. General features and binding of methotrexate
-
Bolin J. T., Filman D. J., Matthews D. A., Hamlin R. C., Kraut J. Crystal structures of Escherichia coli and Lactobacillus casei dihydrofolate reductase refined at 1.7 Å resolution. I. General features and binding of methotrexate. J. Biol. Chem. 257:1982;13650-13662.
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 13650-13662
-
-
Bolin, J.T.1
Filman, D.J.2
Matthews, D.A.3
Hamlin, R.C.4
Kraut, J.5
-
9
-
-
20544433165
-
Van der Waals volumes and radii
-
Bondi A. van der Waals volumes and radii. J. Phys. Chem. 68:1964;441-451.
-
(1964)
J. Phys. Chem.
, vol.68
, pp. 441-451
-
-
Bondi, A.1
-
10
-
-
0027474781
-
"ensemble" iterative relaxation matrix approach: A new NMR refinement protocol applied to the solution structure of crambin
-
Bonvin A. M., Rullman J. A., Lamerichs R. M., Boelens R., Kaptein R. "Ensemble" iterative relaxation matrix approach: a new NMR refinement protocol applied to the solution structure of crambin. Proteins: Struct. Funct. Genet. 15:1993;385-400.
-
(1993)
Proteins: Struct. Funct. Genet.
, vol.15
, pp. 385-400
-
-
Bonvin, A.M.1
Rullman, J.A.2
Lamerichs, R.M.3
Boelens, R.4
Kaptein, R.5
-
11
-
-
0025830469
-
A method to identify protein sequences that fold into a known three-dimensional structure
-
Bowie J. U., Luthy R., Eisenberg D. A method to identify protein sequences that fold into a known three-dimensional structure. Science. 253:1991;164-170.
-
(1991)
Science
, vol.253
, pp. 164-170
-
-
Bowie, J.U.1
Luthy, R.2
Eisenberg, D.3
-
12
-
-
0028247281
-
Side-chain entropy and packing in proteins
-
Bromberg S., Dill K. A. Side-chain entropy and packing in proteins. Protein Sci. 3:1994;997-1009.
-
(1994)
Protein Sci.
, vol.3
, pp. 997-1009
-
-
Bromberg, S.1
Dill, K.A.2
-
14
-
-
0030040864
-
Three-dimensional structure of Xenopus laevis Cu,Zn superoxide dismutase b determined by X-ray crystallography at 1.5 Å resolution
-
Carugo K. D., Battistoni A., Carri M. T., Polticelli F., Desideri A., Rotilio G., Coda A., Wilson K. S., Bolognesi M. Three-dimensional structure of Xenopus laevis Cu,Zn superoxide dismutase b determined by X-ray crystallography at 1.5 Å resolution. Acta Crystallog. sect. D. 52:1996;176-188.
-
(1996)
Acta Crystallog. Sect. D
, vol.52
, pp. 176-188
-
-
Carugo, K.D.1
Battistoni, A.2
Carri, M.T.3
Polticelli, F.4
Desideri, A.5
Rotilio, G.6
Coda, A.7
Wilson, K.S.8
Bolognesi, M.9
-
15
-
-
0014885326
-
Studies on the conformation of amino acids XI. Analysis of the observed side group conformations in proteins
-
Chandrasekaran R., Ramachandran G. N. Studies on the conformation of amino acids XI. Analysis of the observed side group conformations in proteins. Int. J. Pept. Protein Res. 2:1970;223-233.
-
(1970)
Int. J. Pept. Protein Res.
, vol.2
, pp. 223-233
-
-
Chandrasekaran, R.1
Ramachandran, G.N.2
-
16
-
-
0028154527
-
Design of a heme-binding four-helix bundle
-
Choma C. T., Lear J. D., Nelson M. J., Dutton P. L., Robertson D. E., DeGrado W. F. Design of a heme-binding four-helix bundle. J. Am. Chem. Soc. 116:1994;856-865.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 856-865
-
-
Choma, C.T.1
Lear, J.D.2
Nelson, M.J.3
Dutton, P.L.4
Robertson, D.E.5
Degrado, W.F.6
-
17
-
-
0016352763
-
Hydrophobic bonding and accessible surface area in proteins
-
Chothia C. Hydrophobic bonding and accessible surface area in proteins. Nature. 248:1974;338-339.
-
(1974)
Nature
, vol.248
, pp. 338-339
-
-
Chothia, C.1
-
18
-
-
0031020765
-
How far can sequences diverge?
-
Chothia C., Gerstein M. How far can sequences diverge? Nature. 385:1997;579-581.
-
(1997)
Nature
, vol.385
, pp. 579-581
-
-
Chothia, C.1
Gerstein, M.2
-
19
-
-
0021107965
-
Solvent-accessible surfaces of proteins and nucleic acids
-
Connolly M. L. Solvent-accessible surfaces of proteins and nucleic acids. Science. 221:1983;709-713.
-
(1983)
Science
, vol.221
, pp. 709-713
-
-
Connolly, M.L.1
-
20
-
-
0030793767
-
De novo protein design: Fully automated sequence selection
-
Dahiyat B. I., Mayo S. L. De novo protein design: fully automated sequence selection. Science. 278:1997;82-87.
-
(1997)
Science
, vol.278
, pp. 82-87
-
-
Dahiyat, B.I.1
Mayo, S.L.2
-
23
-
-
0028978764
-
The occurrence of C-H···O hydrogen bonds in proteins
-
Derewenda Z. S., Lee L., Derewenda U. The occurrence of C-H···O hydrogen bonds in proteins. J. Mol. Biol. 252:1995;248-262.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 248-262
-
-
Derewenda, Z.S.1
Lee, L.2
Derewenda, U.3
-
24
-
-
0028858499
-
De novo design of the hydrophobic cores of proteins
-
Desjarlais J. R., Handel T. M. De novo design of the hydrophobic cores of proteins. Protein Sci. 4:1995;2006-2018.
-
(1995)
Protein Sci.
, vol.4
, pp. 2006-2018
-
-
Desjarlais, J.R.1
Handel, T.M.2
-
25
-
-
1842326139
-
Bayesian statistical analysis of protein side-chain rotamer preferences
-
Dunbrack R. L. Jr, Cohen F. E. Bayesian statistical analysis of protein side-chain rotamer preferences. Protein Sci. 6:1997;1661-1681.
-
(1997)
Protein Sci.
, vol.6
, pp. 1661-1681
-
-
Dunbrack R.L., Jr.1
Cohen, F.E.2
-
26
-
-
79952608525
-
Accurate bond and angle parameters for X-ray protein structure refinement
-
Engh R. A., Huber R. Accurate bond and angle parameters for X-ray protein structure refinement. Acta Crystallog. sect. A. 47:1991;392-400.
-
(1991)
Acta Crystallog. Sect. a
, vol.47
, pp. 392-400
-
-
Engh, R.A.1
Huber, R.2
-
27
-
-
0026635178
-
De novo design, synthesis and study of albebetin, a polypeptide with a predetermined three-dimensional structure
-
Fedorov A. N., Dolgikh D. A., Chemeris V. V., Chernov B. K., Finkelstein A. V., Schulga A. A., Alakhov Y. B., Kirpichnikov M. P., Ptitsyn O. B. De novo design, synthesis and study of albebetin, a polypeptide with a predetermined three-dimensional structure. J. Mol. Biol. 225:1992;927-931.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 927-931
-
-
Fedorov, A.N.1
Dolgikh, D.A.2
Chemeris, V.V.3
Chernov, B.K.4
Finkelstein, A.V.5
Schulga, A.A.6
Alakhov, Y.B.7
Kirpichnikov, M.P.8
Ptitsyn, O.B.9
-
28
-
-
0031588722
-
NMR solution structure of the pathogenesis-related protein P14A
-
Fernandez C., Szyperski T., Bruyere T., Ramage P., Mosinger E., Wuthrich K. NMR solution structure of the pathogenesis-related protein P14A. J. Mol. Biol. 266:1997;576-593.
-
(1997)
J. Mol. Biol.
, vol.266
, pp. 576-593
-
-
Fernandez, C.1
Szyperski, T.2
Bruyere, T.3
Ramage, P.4
Mosinger, E.5
Wuthrich, K.6
-
29
-
-
0028224544
-
De novo design and structural characterization of an α-helical hairpin peptide: A model system for the study of protein folding intermediates
-
Fezoui Y., Weaver D. L., Osterhout J. J. De novo design and structural characterization of an α-helical hairpin peptide: a model system for the study of protein folding intermediates. Proc. Natl Acad. Sci. USA. 91:1994;3675-3679.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 3675-3679
-
-
Fezoui, Y.1
Weaver, D.L.2
Osterhout, J.J.3
-
30
-
-
0026253604
-
Conformational energy studies of β-sheets of model silk fibroin peptides. i. sheets of poly(Ala-Gly) chains
-
Fossey S. A., Nemethy G., Gibson K. D., Scheraga H. A. Conformational energy studies of β-sheets of model silk fibroin peptides. i. sheets of poly(Ala-Gly) chains. Biopolymers. 31:1991;1529-1541.
-
(1991)
Biopolymers
, vol.31
, pp. 1529-1541
-
-
Fossey, S.A.1
Nemethy, G.2
Gibson, K.D.3
Scheraga, H.A.4
-
31
-
-
0029958604
-
A test of the "jigsaw puzzle" model for protein folding by multiple methionine substitutions within the core of T4 lysozyme
-
Gassner N. C., Baase W. A., Matthews B. W. A test of the "jigsaw puzzle" model for protein folding by multiple methionine substitutions within the core of T4 lysozyme. Proc. Natl Acad. Sci. USA. 93:1996;12155-12158.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 12155-12158
-
-
Gassner, N.C.1
Baase, W.A.2
Matthews, B.W.3
-
32
-
-
0020799931
-
The calculation of molecular volumes and the use of volume analysis in the investigation of structured media and of solid-state organic reactivity
-
Gavezzotti A. The calculation of molecular volumes and the use of volume analysis in the investigation of structured media and of solid-state organic reactivity. J. Am. Chem. Soc. 105:1983;5220-5225.
-
(1983)
J. Am. Chem. Soc.
, vol.105
, pp. 5220-5225
-
-
Gavezzotti, A.1
-
33
-
-
0025823572
-
On the role of methionine residues in the sequence-independent recognition of nonpolar protein surfaces
-
Gellman S. H. On the role of methionine residues in the sequence-independent recognition of nonpolar protein surfaces. Biochemistry. 30:1991;6633-6636.
-
(1991)
Biochemistry
, vol.30
, pp. 6633-6636
-
-
Gellman, S.H.1
-
34
-
-
0016399124
-
Energy functions for peptides and proteins. I. Derivation of a consistent force field including the hydrogen bond from amide crystals
-
Hagler A. T., Huler E., Lifson S. Energy functions for peptides and proteins. I. Derivation of a consistent force field including the hydrogen bond from amide crystals. J. Am. Chem. Soc. 96:1974;5319-5327.
-
(1974)
J. Am. Chem. Soc.
, vol.96
, pp. 5319-5327
-
-
Hagler, A.T.1
Huler, E.2
Lifson, S.3
-
35
-
-
0025040232
-
De novo design, expression, and characterization of felix: A four-helix bundle protein of native-like sequence
-
Hecht M. H., Richardson J. S., Richardson D. C., Ogden R. C. De novo design, expression, and characterization of felix: a four-helix bundle protein of native-like sequence. Science. 249:1990;884-891.
-
(1990)
Science
, vol.249
, pp. 884-891
-
-
Hecht, M.H.1
Richardson, J.S.2
Richardson, D.C.3
Ogden, R.C.4
-
36
-
-
0026656038
-
Crystal structure at 1.7 Å of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target
-
Hegde R. S., Grossman S. R., Laimins L. A., Sigler P. B. Crystal structure at 1.7 Å of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target. Nature. 359:1992;505-512.
-
(1992)
Nature
, vol.359
, pp. 505-512
-
-
Hegde, R.S.1
Grossman, S.R.2
Laimins, L.A.3
Sigler, P.B.4
-
39
-
-
84977299328
-
Anisotropic thermal-parameter refinement of the DNA dodecamer CGCGAATTCGCG by the segmented rigid-body method
-
Holbrook S. R., Dickerson R. E., Kim S.-H. Anisotropic thermal-parameter refinement of the DNA dodecamer CGCGAATTCGCG by the segmented rigid-body method. Acta Crystallog. sect. B. 41:1985;255-262.
-
(1985)
Acta Crystallog. Sect. B
, vol.41
, pp. 255-262
-
-
Holbrook, S.R.1
Dickerson, R.E.2
Kim, S.-H.3
-
40
-
-
0029036051
-
8polypeptides designed for investigating the influence of β-residue packing on the α/β-barrel structure stability
-
8polypeptides designed for investigating the influence of β-residue packing on the α/β-barrel structure stability. Protein Eng. 8:1995;249-259.
-
(1995)
Protein Eng.
, vol.8
, pp. 249-259
-
-
Houbrechts, A.1
Moreau, B.2
Abagyan, R.3
Mainfroid, V.4
Preaux, G.5
Lamproye, A.6
Poncin, A.7
Goormaghtigh, E.8
Ruysschaert, J.-M.9
Martial, J.A.10
Goraj, K.11
-
41
-
-
0027516857
-
Refined 1.6 Å resolution crystal structure of the complex formed between porcine β-trypsin and MCTI-A, a trypsin inhibitor of the squash family
-
Huang Q., Liu S., Tang Y. Refined 1.6 Å resolution crystal structure of the complex formed between porcine β-trypsin and MCTI-A, a trypsin inhibitor of the squash family. J. Mol. Biol. 229:1993;1022-1036.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 1022-1036
-
-
Huang, Q.1
Liu, S.2
Tang, Y.3
-
42
-
-
0026532266
-
Design and structural analysis of alternative hydrophobic core packing arrangements in bacteriophage T4 lysozyme
-
Hurley J. H., Baase W. A., Matthews B. W. Design and structural analysis of alternative hydrophobic core packing arrangements in bacteriophage T4 lysozyme. J. Mol. Biol. 224:1992;1143-1159.
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 1143-1159
-
-
Hurley, J.H.1
Baase, W.A.2
Matthews, B.W.3
-
43
-
-
0023505511
-
Calibration of effective van der Waals atomic contact radii for proteins and peptides
-
Iijima H., Dunbar J. B. J., Marshall G. R. Calibration of effective van der Waals atomic contact radii for proteins and peptides. Proteins: Struct. Funct. Genet. 2:1987;330-339.
-
(1987)
Proteins: Struct. Funct. Genet.
, vol.2
, pp. 330-339
-
-
Iijima, H.1
Dunbar, J.B.J.2
Marshall, G.R.3
-
44
-
-
0028984844
-
Conformation of FK506 in X-ray structures of its complexes with human recombinant FKBP12 mutants
-
Itoh S., DeCenzo M. T., Livingston D. J., Pearlman D. A., Navia M. A. Conformation of FK506 in X-ray structures of its complexes with human recombinant FKBP12 mutants. Bioorg. Med. Chem. Letters. 5:1995;1983-1988.
-
(1995)
Bioorg. Med. Chem. Letters
, vol.5
, pp. 1983-1988
-
-
Itoh, S.1
Decenzo, M.T.2
Livingston, D.J.3
Pearlman, D.A.4
Navia, M.A.5
-
45
-
-
0020685129
-
Structure and refinement of penicillopepsin at 1.8 Å resolution
-
James M. N. G., Sielecki A. R. Structure and refinement of penicillopepsin at 1.8 Å resolution. J. Mol. Biol. 163:1983;299-361.
-
(1983)
J. Mol. Biol.
, vol.163
, pp. 299-361
-
-
James, M.N.G.1
Sielecki, A.R.2
-
47
-
-
0028774178
-
High-resolution solution structures of oxidized and reduced Escherichiacoli thioredoxin
-
Jeng M.-F., Campbell A. P., Begley T., Holmgren A., Case D. A., Wright P. E., Dyson H. J. High-resolution solution structures of oxidized and reduced Escherichiacoli thioredoxin. Structure. 2:1994;853-868.
-
(1994)
Structure
, vol.2
, pp. 853-868
-
-
Jeng, M.-F.1
Campbell, A.P.2
Begley, T.3
Holmgren, A.4
Case, D.A.5
Wright, P.E.6
Dyson, H.J.7
-
48
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones T. A., Zou J.-Y., Cowan S. W., Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallog. sect. A. 47:1991;110-119.
-
(1991)
Acta Crystallog. Sect. a
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.-Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
49
-
-
23444436172
-
Protein design by binary patterning of polar and nonpolar amino acids
-
Kamtekar S., Schiffer J. M., Xiong H., Babik J. M., Hecht M. H. Protein design by binary patterning of polar and nonpolar amino acids. Science. 262:1993;1680-1685.
-
(1993)
Science
, vol.262
, pp. 1680-1685
-
-
Kamtekar, S.1
Schiffer, J.M.2
Xiong, H.3
Babik, J.M.4
Hecht, M.H.5
-
50
-
-
0029748548
-
A persistent preference for layer motifs in self-assemblies of squarates and hydrogen squarates by hydrogen bonding [X-H···O; X=N, O, or C]: A crystallographic study of five organic salts
-
Karle I. L., Ranganathan D., Haridas V. A persistent preference for layer motifs in self-assemblies of squarates and hydrogen squarates by hydrogen bonding [X-H···O; X=N, O, or C]: a crystallographic study of five organic salts. J. Am. Chem. Soc. 118:1996;7128-7133.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 7128-7133
-
-
Karle, I.L.1
Ranganathan, D.2
Haridas, V.3
-
51
-
-
0024962351
-
Determination of the three-dimensional structure of the C-terminal domain of cellobiohydrolase I from Trichoderma reesei. A study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing
-
Kraulis P. J., Clore G. M., Nilges M., Jones T. A., Pettersson G., Knowles J., Gronenborn A. M. Determination of the three-dimensional structure of the C-terminal domain of cellobiohydrolase I from Trichoderma reesei. A study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing. Biochemistry. 28:1989;7241-7257.
-
(1989)
Biochemistry
, vol.28
, pp. 7241-7257
-
-
Kraulis, P.J.1
Clore, G.M.2
Nilges, M.3
Jones, T.A.4
Pettersson, G.5
Knowles, J.6
Gronenborn, A.M.7
-
52
-
-
0029113242
-
Solution structure of the potassium channel inhibitor agitoxin 2: Caliper for probing channel geometry
-
Krezel A. M., Kasibhatla C., Hidalgo P., MacKinnon R., Wagner G. Solution structure of the potassium channel inhibitor agitoxin 2: caliper for probing channel geometry. Protein Sci. 4:1995;1478-1489.
-
(1995)
Protein Sci.
, vol.4
, pp. 1478-1489
-
-
Krezel, A.M.1
Kasibhatla, C.2
Hidalgo, P.3
MacKinnon, R.4
Wagner, G.5
-
53
-
-
0026577240
-
Crystal structure at 1.5-Å resolution of d(CGCICICG), an octanucleotide containing inosine, and its comparison with d(CGCG) and d(CGCGCG) structures
-
Kumar V. D., Harrison R. W., Andrews L. C., Weber I. T. Crystal structure at 1.5-Å resolution of d(CGCICICG), an octanucleotide containing inosine, and its comparison with d(CGCG) and d(CGCGCG) structures. Biochemistry. 31:1992;1541-1550.
-
(1992)
Biochemistry
, vol.31
, pp. 1541-1550
-
-
Kumar, V.D.1
Harrison, R.W.2
Andrews, L.C.3
Weber, I.T.4
-
55
-
-
0028024737
-
The high-resolution crystal structure of a parallel-stranded guanine tetraplex
-
Laughlan G., Murchie A. I. H., Norman D. G., Moore M. H., Moody P. C. E., Lilley D. M. J., Luisi B. The high-resolution crystal structure of a parallel-stranded guanine tetraplex. Science. 265:1994;520-524.
-
(1994)
Science
, vol.265
, pp. 520-524
-
-
Laughlan, G.1
Murchie, A.I.H.2
Norman, D.G.3
Moore, M.H.4
Moody, P.C.E.5
Lilley, D.M.J.6
Luisi, B.7
-
56
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee B. K., Richards F. M. The interpretation of protein structures: estimation of static accessibility. J. Mol. Biol. 55:1971;379-400.
-
(1971)
J. Mol. Biol.
, vol.55
, pp. 379-400
-
-
Lee, B.K.1
Richards, F.M.2
-
57
-
-
0024507791
-
Alternative packing arrangements in the hydrophobic core of λ repressor
-
Lim W. A., Sauer R. T. Alternative packing arrangements in the hydrophobic core of λ repressor. Nature. 339:1989;31-36.
-
(1989)
Nature
, vol.339
, pp. 31-36
-
-
Lim, W.A.1
Sauer, R.T.2
-
58
-
-
0024450809
-
Structural studies of mutants of T4 lysozyme that alter hydrophobic stabilization
-
Matsumura M., Wozniak J. A., Sun D.-P., Matthews B. W. Structural studies of mutants of T4 lysozyme that alter hydrophobic stabilization. J. Biol. Chem. 264:1989;16059-16066.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 16059-16066
-
-
Matsumura, M.1
Wozniak, J.A.2
Sun, D.-P.3
Matthews, B.W.4
-
59
-
-
0023521842
-
Analysis of the relationship between side-chain conformation and secondary structure in globular proteins
-
McGregor M. J., Islam S. A., Sternberg M. J. E. Analysis of the relationship between side-chain conformation and secondary structure in globular proteins. J. Mol. Biol. 198:1987;295-310.
-
(1987)
J. Mol. Biol.
, vol.198
, pp. 295-310
-
-
McGregor, M.J.1
Islam, S.A.2
Sternberg, M.J.E.3
-
61
-
-
5944250450
-
Energy parameters in polypeptides. VII. Geometric parameters, partial atomic changes, nonbonded interactions, hydrogen bond interactions, and intrinsic torsional potentials for the naturally occurring amino acids
-
Momany F. A., McGuire R. F., Burgess A. W., Scheraga H. A. Energy parameters in polypeptides. VII. Geometric parameters, partial atomic changes, nonbonded interactions, hydrogen bond interactions, and intrinsic torsional potentials for the naturally occurring amino acids. J. Phys. Chem. 79:1975;2361-2381.
-
(1975)
J. Phys. Chem.
, vol.79
, pp. 2361-2381
-
-
Momany, F.A.1
McGuire, R.F.2
Burgess, A.W.3
Scheraga, H.A.4
-
62
-
-
0027308075
-
Solution structure of human type-α transforming growth factor determined by heteronuclear NMR spectroscopy and refined by energy minimization with restraints
-
Moy F. J., Li Y.-C., Rauenbuehler P., Winkler M. E., Scheraga H. A., Montelione G. T. Solution structure of human type-α transforming growth factor determined by heteronuclear NMR spectroscopy and refined by energy minimization with restraints. Biochemistry. 32:1993;7334-7353.
-
(1993)
Biochemistry
, vol.32
, pp. 7334-7353
-
-
Moy, F.J.1
Li, Y.-C.2
Rauenbuehler, P.3
Winkler, M.E.4
Scheraga, H.A.5
Montelione, G.T.6
-
63
-
-
0028608066
-
Redesigning the hydrophobic core of a four-helix-bundle protein
-
Munson M., O'Brien R., Sturtevant J. M., Regan L. Redesigning the hydrophobic core of a four-helix-bundle protein. Protein Sci. 3:1994;2015-2022.
-
(1994)
Protein Sci.
, vol.3
, pp. 2015-2022
-
-
Munson, M.1
O'Brien, R.2
Sturtevant, J.M.3
Regan, L.4
-
64
-
-
0001334464
-
Template-assembled synthetic proteins with four-helix-bundle topology. Total chemical synthesis and conformational studies
-
Mutter M., Tuchscherer G. G., Miller C., Altmann K.-H., Carey R. I., Wyss D. F., Labhardt A. M., Rivier J. E. Template-assembled synthetic proteins with four-helix-bundle topology. Total chemical synthesis and conformational studies. J. Am. Chem. Soc. 114:1992;1463-1470.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 1463-1470
-
-
Mutter, M.1
Tuchscherer, G.G.2
Miller, C.3
Altmann, K.-H.4
Carey, R.I.5
Wyss, D.F.6
Labhardt, A.M.7
Rivier, J.E.8
-
65
-
-
0001731773
-
Energy parameters in polypeptides. 10. Improved geometrical parameters and nonbonded interactions for use in the ECEPP/3 algorithm, with application to proline-containing peptides
-
Nemethy G., Gibson K. D., Palmer K. A., Yoon C. N., Paterlini G., Zagari A., Rumsey S., Scheraga H. A. Energy parameters in polypeptides. 10. Improved geometrical parameters and nonbonded interactions for use in the ECEPP/3 algorithm, with application to proline-containing peptides. J. Phys. Chem. 96:1992;6472-6484.
-
(1992)
J. Phys. Chem.
, vol.96
, pp. 6472-6484
-
-
Nemethy, G.1
Gibson, K.D.2
Palmer, K.A.3
Yoon, C.N.4
Paterlini, G.5
Zagari, A.6
Rumsey, S.7
Scheraga, H.A.8
-
66
-
-
0030484731
-
Atomic resolution structure of concanavalin A at 120 K
-
Parkin S., Rupp B., Hope H. Atomic resolution structure of concanavalin A at 120 K. Acta Crystallog. sect. D. 52:1996;1161-1168.
-
(1996)
Acta Crystallog. Sect. D
, vol.52
, pp. 1161-1168
-
-
Parkin, S.1
Rupp, B.2
Hope, H.3
-
67
-
-
0023155210
-
Tertiary templates for proteins: Use of packing criteria in the enumeration of allowed sequences for different structural classes
-
Ponder J. W., Richards F. M. Tertiary templates for proteins: use of packing criteria in the enumeration of allowed sequences for different structural classes. J. Mol. Biol. 193:1987;775-791.
-
(1987)
J. Mol. Biol.
, vol.193
, pp. 775-791
-
-
Ponder, J.W.1
Richards, F.M.2
-
68
-
-
0026059567
-
Structure of the B - DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G
-
Prive G. G., Yanagi K., Dickerson R. E. Structure of the B - DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G. J. Mol. Biol. 217:1991;177-199.
-
(1991)
J. Mol. Biol.
, vol.217
, pp. 177-199
-
-
Prive, G.G.1
Yanagi, K.2
Dickerson, R.E.3
-
69
-
-
0028587717
-
Beta doublet: De novo design, synthesis and characterization of a novel β sandwich protein
-
Quinn T. P., Tweedy N. B., Williams R. W., Richardson J. S., Richardson D. C. Beta doublet: de novo design, synthesis and characterization of a novel β sandwich protein. Proc. Natl Acad. Sci. USA. 91:1994;8747-8751.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 8747-8751
-
-
Quinn, T.P.1
Tweedy, N.B.2
Williams, R.W.3
Richardson, J.S.4
Richardson, D.C.5
-
70
-
-
0015977588
-
The interpretation of protein structures: Total volume, group volume distributions and packing density
-
Richards F. M. The interpretation of protein structures: total volume, group volume distributions and packing density. J. Mol. Biol. 82:1974;1-14.
-
(1974)
J. Mol. Biol.
, vol.82
, pp. 1-14
-
-
Richards, F.M.1
-
71
-
-
0017429069
-
Area, volumes, packing, and protein structure
-
Richards F. M. Area, volumes, packing, and protein structure. Annu. Rev. Biophys. Bioeng. 6:1977;151-176.
-
(1977)
Annu. Rev. Biophys. Bioeng.
, vol.6
, pp. 151-176
-
-
Richards, F.M.1
-
72
-
-
0027815614
-
An analysis of packing in the protein folding problem
-
Richards F. M., Lim W. A. An analysis of packing in the protein folding problem. Quart. Rev. Biophys. 26:1993;423-498.
-
(1993)
Quart. Rev. Biophys.
, vol.26
, pp. 423-498
-
-
Richards, F.M.1
Lim, W.A.2
-
74
-
-
0027049243
-
The kinemage: A tool for scientific illustration
-
Richardson D. C., Richardson J. S. The kinemage: a tool for scientific illustration. Protein Sci. 1:1992;3-9.
-
(1992)
Protein Sci.
, vol.1
, pp. 3-9
-
-
Richardson, D.C.1
Richardson, J.S.2
-
75
-
-
0028288709
-
Kinemages: Simple macromolecular graphics for interactive teaching and publication
-
Richardson D. C., Richardson J. S. Kinemages: simple macromolecular graphics for interactive teaching and publication. Trends Biochem. Sci. 19:1994;135-138.
-
(1994)
Trends Biochem. Sci.
, vol.19
, pp. 135-138
-
-
Richardson, D.C.1
Richardson, J.S.2
-
76
-
-
0019443447
-
The anatomy and taxonomy of protein structure
-
C. B. Anfinsen, J. T. Edsall, & F. M. Richards. New York: Academic Press
-
Richardson J. S. The anatomy and taxonomy of protein structure. Anfinsen C. B., Edsall J. T., Richards F. M. Advances in Protein Chemistry. 1981;167-339 Academic Press, New York.
-
(1981)
Advances in Protein Chemistry
, pp. 167-339
-
-
Richardson, J.S.1
-
77
-
-
0000924868
-
Some design principles: Betabellin
-
D. L. Oxender, & C. F. Fox. New York: Alan R. Liss, Inc.
-
Richardson J. S., Richardson D. C. Some design principles: betabellin. Oxender D. L., Fox C. F. Protein Engineering. 1987;149-163, 340-341 Alan R. Liss, Inc. New York.
-
(1987)
Protein Engineering
, pp. 149-163
-
-
Richardson, J.S.1
Richardson, D.C.2
-
78
-
-
0024247827
-
Helix lap-joints as ion-binding sites: DNA-binding helix pairs and Ca-binding "e-F hands" are related by charge and sequence reversal
-
Richardson J. S., Richardson D. C. Helix lap-joints as ion-binding sites: DNA-binding helix pairs and Ca-binding "E-F hands" are related by charge and sequence reversal. Proteins: Struct. Funct. Genet. 4:1988;229-239.
-
(1988)
Proteins: Struct. Funct. Genet.
, vol.4
, pp. 229-239
-
-
Richardson, J.S.1
Richardson, D.C.2
-
79
-
-
0026619394
-
Looking at proteins: Representations, folding, packing, and design
-
Richardson J. S., Richardson D. C., Tweedy N. B., Gernert K. M., Quinn T. P., Hecht M. H., Erickson B. W., Yan Y., McClain R. D., Donlan M. E., Surles M. C. Looking at proteins: representations, folding, packing, and design. Biophys. J. 63:1992;1186-1209.
-
(1992)
Biophys. J.
, vol.63
, pp. 1186-1209
-
-
Richardson, J.S.1
Richardson, D.C.2
Tweedy, N.B.3
Gernert, K.M.4
Quinn, T.P.5
Hecht, M.H.6
Erickson, B.W.7
Yan, Y.8
McClain, R.D.9
Donlan, M.E.10
Surles, M.C.11
-
80
-
-
0031441458
-
De novo heme proteins from designed combinatorial libraries
-
Rojas N. R. L., Kamtekar S., Simons C. T., McLean J. E., Vogel K. M., Spiro T. G., Farid R. S., Hecht M. H. De novo heme proteins from designed combinatorial libraries. Protein Sci. 6:1997;2512-2524.
-
(1997)
Protein Sci.
, vol.6
, pp. 2512-2524
-
-
Rojas, N.R.L.1
Kamtekar, S.2
Simons, C.T.3
McLean, J.E.4
Vogel, K.M.5
Spiro, T.G.6
Farid, R.S.7
Hecht, M.H.8
-
81
-
-
12644293826
-
The bi-loop, a new general four-stranded DNA motif
-
Salisbury S. A., Wilson S. E., Powell H. R., Kennard O., Lubini P., Sheldrick G. M., Escaja N., Alazzouzi E., Grandas A., Pedroso E. The bi-loop, a new general four-stranded DNA motif. Proc. Natl Acad. Sci. USA. 94:1997;5515-5518.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 5515-5518
-
-
Salisbury, S.A.1
Wilson, S.E.2
Powell, H.R.3
Kennard, O.4
Lubini, P.5
Sheldrick, G.M.6
Escaja, N.7
Alazzouzi, E.8
Grandas, A.9
Pedroso, E.10
-
82
-
-
0030930760
-
Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: Crystallographic evidence
-
Sawaya M. R., Kraut J. Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: crystallographic evidence. Biochemistry. 36:1997;11205-11215.
-
(1997)
Biochemistry
, vol.36
, pp. 11205-11215
-
-
Sawaya, M.R.1
Kraut, J.2
-
83
-
-
0027208112
-
Rotamers: To be or not to be? An analysis of amino acid side-chain conformations in globular proteins
-
Schrauber H., Eisenhaber F., Argos P. Rotamers: to be or not to be? An analysis of amino acid side-chain conformations in globular proteins. J. Mol. Biol. 230:1993;592-612.
-
(1993)
J. Mol. Biol.
, vol.230
, pp. 592-612
-
-
Schrauber, H.1
Eisenhaber, F.2
Argos, P.3
-
84
-
-
0030476765
-
Capturing the structure of a catalytic RNA intermediate: The hammerhead ribozyme
-
Scott W. G., Murray J. B., Arnold J. R. P., Stoddard B. L., Klug A. Capturing the structure of a catalytic RNA intermediate: the hammerhead ribozyme. Science. 274:1996;2065-2069.
-
(1996)
Science
, vol.274
, pp. 2065-2069
-
-
Scott, W.G.1
Murray, J.B.2
Arnold, J.R.P.3
Stoddard, B.L.4
Klug, A.5
-
86
-
-
0024742246
-
Theory of cooperative transitions in protein molecules. I. Why denaturation of globular protein is a 1st-order phase transition
-
Shakhnovich E. I., Finkelstein A. V. Theory of cooperative transitions in protein molecules. I. Why denaturation of globular protein is a 1st-order phase transition. Biopolymers. 28:1989;1667-1680.
-
(1989)
Biopolymers
, vol.28
, pp. 1667-1680
-
-
Shakhnovich, E.I.1
Finkelstein, A.V.2
-
88
-
-
0025005525
-
Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease
-
Shortle D., Stites W. E., Meeker A. K. Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease. Biochemistry. 29:1990;8033-8041.
-
(1990)
Biochemistry
, vol.29
, pp. 8033-8041
-
-
Shortle, D.1
Stites, W.E.2
Meeker, A.K.3
-
89
-
-
0015866154
-
Environment and exposure to solvent of protein atoms. Lysozyme and insulin
-
Shrake A., Rupley J. A. Environment and exposure to solvent of protein atoms. Lysozyme and insulin. J. Mol. Biol. 79:1973;351-371.
-
(1973)
J. Mol. Biol.
, vol.79
, pp. 351-371
-
-
Shrake, A.1
Rupley, J.A.2
-
90
-
-
0028955319
-
Greek key jellyroll protein motif design: Expression and characterization of a first-generation molecule
-
Smith D. D. S., Pratt K. A., Sumner I. G., Henneke C. M. Greek key jellyroll protein motif design: expression and characterization of a first-generation molecule. Protein Eng. 8:1995;13-20.
-
(1995)
Protein Eng.
, vol.8
, pp. 13-20
-
-
Smith, D.D.S.1
Pratt, K.A.2
Sumner, I.G.3
Henneke, C.M.4
-
91
-
-
0030593029
-
Design of a monomeric 23-residue polypeptide with defined tertiary structure
-
Struthers M. D., Cheng R. P., Imperiali B. Design of a monomeric 23-residue polypeptide with defined tertiary structure. Science. 271:1996;342-345.
-
(1996)
Science
, vol.271
, pp. 342-345
-
-
Struthers, M.D.1
Cheng, R.P.2
Imperiali, B.3
-
92
-
-
0029870514
-
Crystal structure of a yeast TFIIA/TBP/DNA complex
-
Tan S., Hunziker Y., Sargent D. F., Richmond T. J. Crystal structure of a yeast TFIIA/TBP/DNA complex. Nature. 381:1996;127-134.
-
(1996)
Nature
, vol.381
, pp. 127-134
-
-
Tan, S.1
Hunziker, Y.2
Sargent, D.F.3
Richmond, T.J.4
-
93
-
-
0025906404
-
Three-dimensional structure of the elastase of Pseudomonasaeruginosa at 1.5- Å resolution
-
Thayer M. M., Flaherty K. M., McKay D. B. Three-dimensional structure of the elastase of Pseudomonasaeruginosa at 1.5- Å resolution. J. Biol. Chem. 266:1991;2864-2871.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 2864-2871
-
-
Thayer, M.M.1
Flaherty, K.M.2
McKay, D.B.3
-
94
-
-
0026179489
-
A new approach to the rapid determination of protein side chain conformations
-
Tuffery P., Etchebest C., Hazout S., Lavery R. A new approach to the rapid determination of protein side chain conformations. J. Biomol. Struct. Dynam. 8:1991;1267-1289.
-
(1991)
J. Biomol. Struct. Dynam.
, vol.8
, pp. 1267-1289
-
-
Tuffery, P.1
Etchebest, C.2
Hazout, S.3
Lavery, R.4
-
95
-
-
0142140800
-
Prediction of protein side-chain conformations: A study on the influence of backbone accuracy on conformation stability in the rotamer space
-
Tuffery P., Etchebest C., Hazout S. Prediction of protein side-chain conformations: a study on the influence of backbone accuracy on conformation stability in the rotamer space. Protein Eng. 10:1997;361-372.
-
(1997)
Protein Eng.
, vol.10
, pp. 361-372
-
-
Tuffery, P.1
Etchebest, C.2
Hazout, S.3
-
96
-
-
0030044773
-
The structure of r(UUCGCG) has a 5′-UU-overhang exhibiting Hoogsteen-like trans U·U base pairs
-
Wahl M. C., Rao S. T., Sundaralingam M. The structure of r(UUCGCG) has a 5′-UU-overhang exhibiting Hoogsteen-like trans U·U base pairs. Nature Struct. Biol. 3:1996;24-31.
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 24-31
-
-
Wahl, M.C.1
Rao, S.T.2
Sundaralingam, M.3
-
98
-
-
0033614004
-
Asparagine and glutamine: Using hydrogen atom contacts in the choice of sidechain amide orientation
-
Word J. M., Lovell S. C., Richardson J. S., Richardson D. C. Asparagine and glutamine: using hydrogen atom contacts in the choice of sidechain amide orientation. J. Mol. Biol. 285:1999;1735-1747.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1735-1747
-
-
Word, J.M.1
Lovell, S.C.2
Richardson, J.S.3
Richardson, D.C.4
-
99
-
-
0028332168
-
25form of crambin at 150 K refined to 1.05-Å resolution
-
25form of crambin at 150 K refined to 1.05-Å resolution. J. Biol. Chem. 269:1994;13956-13965.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 13956-13965
-
-
Yamano, A.1
Teeter, M.M.2
|