-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang JH, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.H.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0029095440
-
Analytical solutions of the sinucleotide probability after and before random mutations
-
Arques DG, Michel CJ (1995) Analytical solutions of the sinucleotide probability after and before random mutations. J Theor Biol 175:533-544
-
(1995)
J Theor Biol
, vol.175
, pp. 533-544
-
-
Arques, D.G.1
Michel, C.J.2
-
4
-
-
0028873712
-
Nuclear DNA amounts in Angiosperms
-
Bennett MD, Leitch IJ (1995) Nuclear DNA amounts in Angiosperms. Ann Bot 76:113-176
-
(1995)
Ann Bot
, vol.76
, pp. 113-176
-
-
Bennett, M.D.1
Leitch, I.J.2
-
6
-
-
0033976643
-
Transposable element contributions to plant gene and genome evolution
-
Bennetzen JL (2000) Transposable element contributions to plant gene and genome evolution. Plant Mol Biol 42:251-269
-
(2000)
Plant Mol Biol
, vol.42
, pp. 251-269
-
-
Bennetzen, J.L.1
-
7
-
-
0026940433
-
Tourist - A large family of small inverted repeat elements frequently associated with maize genes
-
Bureau TE, Wessler SR (1992) Tourist - a large family of small inverted repeat elements frequently associated with maize genes. Plant Cell 4:1283-1294
-
(1992)
Plant Cell
, vol.4
, pp. 1283-1294
-
-
Bureau, T.E.1
Wessler, S.R.2
-
8
-
-
0028450046
-
Stowaway - A new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants
-
Bureau TE, Wessler SR (1994) Stowaway - a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants. Plant Cell 6:907-916
-
(1994)
Plant Cell
, vol.6
, pp. 907-916
-
-
Bureau, T.E.1
Wessler, S.R.2
-
10
-
-
0031772015
-
Comparative RFLP mapping of Triticum monococcum genes controlling vernalization requirement
-
Dubcovsky J, Lijavetzky D, Appendino L, Tranquilli G (1998) Comparative RFLP mapping of Triticum monococcum genes controlling vernalization requirement. Theor Appl Genet 97: 968-975
-
(1998)
Theor Appl Genet
, vol.97
, pp. 968-975
-
-
Dubcovsky, J.1
Lijavetzky, D.2
Appendino, L.3
Tranquilli, G.4
-
11
-
-
0035106055
-
Comparative sequence analysis of colinear barley and rice BACs
-
Dubcovsky J, Ramakrishna W, SanMiguel P, Busso C, Yan L, Shiloff B, Bennetzen J (2001) Comparative sequence analysis of colinear barley and rice BACs. Plant Physiol 125:1342-1353
-
(2001)
Plant Physiol
, vol.125
, pp. 1342-1353
-
-
Dubcovsky, J.1
Ramakrishna, W.2
SanMiguel, P.3
Busso, C.4
Yan, L.5
Shiloff, B.6
Bennetzen, J.7
-
12
-
-
0000765676
-
Distribution of nonstructural variation between wheat cultivars along chromosome arm 6Bp: Evidence from the linkage map and physical map of the arm
-
Dvorak J, Chen KC (1984) Distribution of nonstructural variation between wheat cultivars along chromosome arm 6Bp: evidence from the linkage map and physical map of the arm. Genetics 106:325-333
-
(1984)
Genetics
, vol.106
, pp. 325-333
-
-
Dvorak, J.1
Chen, K.C.2
-
13
-
-
0031978181
-
Base-calling of automated sequencer traces using PHRED. II. Error probabilities
-
Ewing B, Green P (1998) Base-calling of automated sequencer traces using PHRED. II. Error probabilities. Genome Res 8:186-194
-
(1998)
Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
14
-
-
0033977072
-
Saturation mapping of a gene-rich recombination hot spot region in wheat
-
Faris JD, Haen KM, Gill BS (2000) Saturation mapping of a gene-rich recombination hot spot region in wheat. Genetics 154: 823-835
-
(2000)
Genetics
, vol.154
, pp. 823-835
-
-
Faris, J.D.1
Haen, K.M.2
Gill, B.S.3
-
15
-
-
0029812835
-
Substitution rate comparisons between grasses and palms - Synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene Rbcl
-
Gaut BS, Morton BR, McCaig BC, Clegg MT (1996) Substitution rate comparisons between grasses and palms - synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene Rbcl. Proc Natl Acad Sci USA 93:10274-10279
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 10274-10279
-
-
Gaut, B.S.1
Morton, B.R.2
McCaig, B.C.3
Clegg, M.T.4
-
16
-
-
0030030450
-
Identification and high-density mapping of gene-rich regions in chromosome group 5 of wheat
-
Gill KS, Gill BS, Endo TR, Boyko EV (1996a) Identification and high-density mapping of gene-rich regions in chromosome group 5 of wheat. Genetics 143:1001-1012
-
(1996)
Genetics
, vol.143
, pp. 1001-1012
-
-
Gill, K.S.1
Gill, B.S.2
Endo, T.R.3
Boyko, E.V.4
-
17
-
-
0030467769
-
Identification and high-density mapping of gene-rich regions in chromosome group 1 of wheat
-
Gill KS, Gill BS, Endo TR, Taylor T (1996b) Identification and high-density mapping of gene-rich regions in chromosome group 1 of wheat. Genetics 144:1883-1891
-
(1996)
Genetics
, vol.144
, pp. 1883-1891
-
-
Gill, K.S.1
Gill, B.S.2
Endo, T.R.3
Taylor, T.4
-
18
-
-
0031955116
-
CONSED: A graphical tool for sequencing finishing
-
Gordon D, Abajian C, Green P (1998) CONSED: a graphical tool for sequencing finishing. Genome Res 8:195-202
-
(1998)
Genome Res
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
19
-
-
0032766092
-
Phylogeny and transpositional activity of Ty1-copia group retrotransposons in cereal genomes
-
Gribbon BM, Pearce SR, Kalendar R, Schulman AH, Paulin L, Jack P, Kumar A, Flavell AJ (1999) Phylogeny and transpositional activity of Ty1-copia group retrotransposons in cereal genomes. Mol Gen Genet 261:883-891
-
(1999)
Mol Gen Genet
, vol.261
, pp. 883-891
-
-
Gribbon, B.M.1
Pearce, S.R.2
Kalendar, R.3
Schulman, A.H.4
Paulin, L.5
Jack, P.6
Kumar, A.7
Flavell, A.J.8
-
20
-
-
0019417156
-
Sequence specificity of methylation in higher plant DNA
-
Gruenbaum Y, Naveh-Many T, Cedar H, Razin A (1981) Sequence specificity of methylation in higher plant DNA. Nature 292:860-862
-
(1981)
Nature
, vol.292
, pp. 860-862
-
-
Gruenbaum, Y.1
Naveh-Many, T.2
Cedar, H.3
Razin, A.4
-
21
-
-
0034103860
-
Silencing of retrotransposons in Arabidopsis and reactivation by the ddm1 mutation
-
Hirochika H, Okamoto H, Kakutani T (2000) Silencing of retrotransposons in Arabidopsis and reactivation by the ddm1 mutation. Plant Cell 12:357-368
-
(2000)
Plant Cell
, vol.12
, pp. 357-368
-
-
Hirochika, H.1
Okamoto, H.2
Kakutani, T.3
-
22
-
-
0032977896
-
Comparative mapping of the wheat Vrn-1 region with the rice Hd-6 region
-
Kato K, Miura H, Sawada S (1999) Comparative mapping of the wheat Vrn-1 region with the rice Hd-6 region. Genome 42:204-209
-
(1999)
Genome
, vol.42
, pp. 204-209
-
-
Kato, K.1
Miura, H.2
Sawada, S.3
-
23
-
-
0019296687
-
A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
-
Kimura M (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
-
(1980)
J Mol Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
25
-
-
0037735147
-
-
Arizona State University, Tempe, Ariz
-
Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Arizona State University, Tempe, Ariz.
-
(2001)
MEGA2: Molecular Evolutionary Genetics Analysis Software
-
-
Kumar, S.1
Tamura, K.2
Jakobsen, I.B.3
Nei, M.4
-
27
-
-
0033493289
-
Construction and characterization of a bacterial artificial chromosome (BAC) library for the a genome of wheat
-
Lijavetzky D, Muzzi G, Wicker T, Keller B, Wing R, Dubcovsky J (1999) Construction and characterization of a bacterial artificial chromosome (BAC) library for the A genome of wheat. Genome 42:1176-1182
-
(1999)
Genome
, vol.42
, pp. 1176-1182
-
-
Lijavetzky, D.1
Muzzi, G.2
Wicker, T.3
Keller, B.4
Wing, R.5
Dubcovsky, J.6
-
28
-
-
0002657563
-
Max efficiency DH10B: A host for cloning methylated DNA
-
Lorow D, Jessee J (1990) Max efficiency DH10B: a host for cloning methylated DNA. Focus 12:19
-
(1990)
Focus
, vol.12
, pp. 19
-
-
Lorow, D.1
Jessee, J.2
-
29
-
-
0000345232
-
Physical distribution of recombination in B-genome chromosomes of tetraploid wheat
-
Lukaszewski AJ, Curtis CA (1993) Physical distribution of recombination in B-genome chromosomes of tetraploid wheat. Theor Appl Genet 84:121-127
-
(1993)
Theor Appl Genet
, vol.84
, pp. 121-127
-
-
Lukaszewski, A.J.1
Curtis, C.A.2
-
30
-
-
0021759169
-
Doublet frequencies in evolutionary distinct groups
-
Nussinov R (1984) Doublet frequencies in evolutionary distinct groups. Nucleic Acids Res 12:1749-1763
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 1749-1763
-
-
Nussinov, R.1
-
31
-
-
2642665514
-
A contiguous 60 kb genomic stretch from barley reveals molecular evidence for gene islands in a monocot genome
-
Panstruga R, Buschges R, Piffanelli P, SchulzeLefert P (1998) A contiguous 60 kb genomic stretch from barley reveals molecular evidence for gene islands in a monocot genome. Nucleic Acids Res 26:1056-1062
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1056-1062
-
-
Panstruga, R.1
Buschges, R.2
Piffanelli, P.3
Schulzelefert, P.4
-
32
-
-
0032413101
-
Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons
-
SanMiguel P, Bennetzen JE (1998) Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons. Ann Bot 82:37-44
-
(1998)
Ann Bot
, vol.82
, pp. 37-44
-
-
SanMiguel, P.1
Bennetzen, J.E.2
-
33
-
-
0013630297
-
Nested retrotransposons in the intergenic regions of the maize genome
-
SanMiguel P, Tikhonov A, Jin Y-K, Motchoulskaia N, Zakharov D, Melake-Berhan A, Springer PS, Edwards KJ, Lee M, Avramova Z, Bennetzen JL (1996) Nested retrotransposons in the intergenic regions of the maize genome. Science 274:765-768
-
(1996)
Science
, vol.274
, pp. 765-768
-
-
SanMiguel, P.1
Tikhonov, A.2
Jin, Y.-K.3
Motchoulskaia, N.4
Zakharov, D.5
Melake-Berhan, A.6
Springer, P.S.7
Edwards, K.J.8
Lee, M.9
Avramova, Z.10
Bennetzen, J.L.11
-
34
-
-
0031707062
-
The paleontology of intergene retrotransposons of maize
-
SanMiguel P, Gaut BS, Tikhonov A, Nakajima Y, Bennetzen JL (1998) The paleontology of intergene retrotransposons of maize. Nat Genet 20:43-45
-
(1998)
Nat Genet
, vol.20
, pp. 43-45
-
-
SanMiguel, P.1
Gaut, B.S.2
Tikhonov, A.3
Nakajima, Y.4
Bennetzen, J.L.5
-
35
-
-
0031875293
-
Comparative mapping of the wheat chromosome 5A Vrn-A1 region with rice and its relationship to QTL for flowering time
-
Sarma RN, Gill BS, Sasaki T, Galiba G, Sutka J, Laurie DA, Snape JW (1998) Comparative mapping of the wheat chromosome 5A Vrn-A1 region with rice and its relationship to QTL for flowering time. Theor Appl Genet 97:103-109
-
(1998)
Theor Appl Genet
, vol.97
, pp. 103-109
-
-
Sarma, R.N.1
Gill, B.S.2
Sasaki, T.3
Galiba, G.4
Sutka, J.5
Laurie, D.A.6
Snape, J.W.7
-
36
-
-
0004282518
-
-
SAS Institute, Cary, N. Y.
-
SAS Institute (2001) SAS user's guide, version 8. SAS Institute, Cary, N. Y.
-
(2001)
SAS User's Guide, Version 8
-
-
-
37
-
-
0033852426
-
A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion
-
Shirasu K, Schulman AH, Lahaye T, Schulze-Lefert P (2000) A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion. Genome Res 10:908-915
-
(2000)
Genome Res
, vol.10
, pp. 908-915
-
-
Shirasu, K.1
Schulman, A.H.2
Lahaye, T.3
Schulze-Lefert, P.4
-
38
-
-
0029084897
-
DNA methylation associated with repeat-induced point mutation in Neurospora Crassa
-
Singer MJ, Marcotte BA, Selker EU (1995) DNA methylation associated with repeat-induced point mutation in Neurospora Crassa. Mol Cell Biol 15:5586-5597
-
(1995)
Mol Cell Biol
, vol.15
, pp. 5586-5597
-
-
Singer, M.J.1
Marcotte, B.A.2
Selker, E.U.3
-
39
-
-
0034100468
-
Highly recombinogenic regions at seed storage protein loci on chromosome IDS of Aegilops tauschii, the D-genome donor of wheat
-
Spielmeyer W, Moullet O, Laroche A, Lagudah ES (2000) Highly recombinogenic regions at seed storage protein loci on chromosome IDS of Aegilops tauschii, the D-genome donor of wheat. Genetics 155:361-367
-
(2000)
Genetics
, vol.155
, pp. 361-367
-
-
Spielmeyer, W.1
Moullet, O.2
Laroche, A.3
Lagudah, E.S.4
-
40
-
-
0034700133
-
Subgenome chromosome walking in wheat: A 450-kb physical contig in Triticum monococcum L. spans the Lr10 resistance locus in hexaploid wheat (Triticum aestivum L.)
-
Stein N, Feuillet C, Wicker T, Schlagenhauf E, Keller B (2000) Subgenome chromosome walking in wheat: a 450-kb physical contig in Triticum monococcum L. spans the Lr10 resistance locus in hexaploid wheat (Triticum aestivum L.). Proc Natl Acad Sci USA 97:13436-13441
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 13436-13441
-
-
Stein, N.1
Feuillet, C.2
Wicker, T.3
Schlagenhauf, E.4
Keller, B.5
-
41
-
-
0032806690
-
Physical mapping of the Vrn-A1 and Fr1 genes on chromosome 5A of wheat using deletion lines
-
Sutka J, Galiba G, Vagujfalvi A, Gill BS, Snape JW (1999) Physical mapping of the Vrn-A1 and Fr1 genes on chromosome 5A of wheat using deletion lines. Theor Appl Genet 99:199-202
-
(1999)
Theor Appl Genet
, vol.99
, pp. 199-202
-
-
Sutka, J.1
Galiba, G.2
Vagujfalvi, A.3
Gill, B.S.4
Snape, J.W.5
-
42
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
43
-
-
0033594895
-
Colinearity and its exceptions in orthologous adh regions of maize and sorghum
-
Tikhonov AP, SanMiguel PJ, Nakajima Y, Gorenstein NM, Bennetzen JL, Avramova Z (1999) Colinearity and its exceptions in orthologous adh regions of maize and sorghum. Proc Natl Acad Sci USA 96:7409-7414
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 7409-7414
-
-
Tikhonov, A.P.1
SanMiguel, P.J.2
Nakajima, Y.3
Gorenstein, N.M.4
Bennetzen, J.L.5
Avramova, Z.6
-
44
-
-
0034944487
-
Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution
-
Wicker T, Stein N, Albar L, Feuillet C, Schlagenhauf E, Keller B (2001) Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution. Plant J 26:307-316
-
(2001)
Plant J
, vol.26
, pp. 307-316
-
-
Wicker, T.1
Stein, N.2
Albar, L.3
Feuillet, C.4
Schlagenhauf, E.5
Keller, B.6
-
45
-
-
0035923510
-
Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes
-
Witte CP, Le QH, Bureau T, Kumar A (2001) Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes. Proc Natl Acad Sci USA 98:13778-13783
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 13778-13783
-
-
Witte, C.P.1
Le, Q.H.2
Bureau, T.3
Kumar, A.4
-
46
-
-
0024712231
-
Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data
-
Wolfe KH, Gouy M, Yang YW, Sharp PM, Li WH (1989) Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc Natl Acad Sci USA 86:6201-6205
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 6201-6205
-
-
Wolfe, K.H.1
Gouy, M.2
Yang, Y.W.3
Sharp, P.M.4
Li, W.H.5
-
47
-
-
0029556714
-
Meiotic recombination break points resolve at high rates at the 5 end of a maize coding sequence
-
Xu XJ, Hsia AP, Zhang L, Nikolau BJ, Schnable PS (1995) Meiotic recombination break points resolve at high rates at the 5 end of a maize coding sequence. Plant Cell 7:2151-2152
-
(1995)
Plant Cell
, vol.7
, pp. 2151-2152
-
-
Xu, X.J.1
Hsia, A.P.2
Zhang, L.3
Nikolau, B.J.4
Schnable, P.S.5
|