Parasitism and the retrotransposon life cycle in plants: A hitchhiker's guide to the genome
10.1038/sj.hdy.6800903 16985508
Sabot F Schulman AH Parasitism and the retrotransposon life cycle in plants: A hitchhiker's guide to the genome Heredity 2006 97 381-388 10.1038/sj.hdy.6800903 16985508
Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis
186626 12097344 10.1101/gr.132102
Devos KM Brown JKM Bennetzen JL Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis Genome Res 2002 12 1075-1079 186626 12097344 10.1101/gr.132102
The wheat D-genome HMW-glutenin locus: BAC sequencing, gene distribution, and retrotransposon clusters
Anderson OD Rausch C Moullet O Lagudah ES The wheat D-genome HMW-glutenin locus: BAC sequencing, gene distribution, and retrotransposon clusters Funct Int Genomics 2003 3 56-68
Dynamics of the evolution of orthologous and paralogous portions of a complex locus region in two genomes of allopolyploid wheat
10.1023/B:PLAN.0000028768.21587.dc 15159634
Kong X-Y Gu YQ You FM Dubcovsky J Anderson OD Dynamics of the evolution of orthologous and paralogous portions of a complex locus region in two genomes of allopolyploid wheat Plant Mol Biol 2004 54 55-69 10.1023/ B:PLAN.0000028768.21587.dc 15159634
Sequencing of the Triticum monococcum Hardness locus reveals good microcolinearity with rice
10.1007/s00438-004-0991-y 15014981
Chantret N Cenci A Sabot F Anderson OD Dubcovsky J Sequencing of the Triticum monococcum Hardness locus reveals good microcolinearity with rice Mol Genet Genomics 2004 271 377-386 10.1007/s00438-004-0991-y 15014981
Molecular basis of evolutionary events that shaped the Hardness, Ha locus in diploid and polyploidy wheat species, Triticum and Aegilops
1087984 15749759 10.1105/tpc.104.029181
Chantret N Salse J Sabot F Rahman S Bellec A Laubin B Dubois I Dossat C Sourdille P Joudrier P Gautier MF Cattolico L Beckert M Aubourg S Weissenbach J Caboche M Bernard M Leroy P Chalhoub B Molecular basis of evolutionary events that shaped the Hardness, Ha locus in diploid and polyploidy wheat species, Triticum and Aegilops The Plant Cell 2005 17 1033-1045 1087984 15749759 10.1105/tpc.104.029181
Updating transposable element annotations from large wheat genomic sequences reveals diverse activities and gene association of elements
10.1007/s00438-005-0012-9 16034625
Sabot F Guyot R Wicker T Chantret N Salse J Laubin B Leroy P Sourdille P Chalhoub B Bernard M Updating transposable element annotations from large wheat genomic sequences reveals diverse activities and gene association of elements Mol Genet Genomics 2005 274 119-132 10.1007/ s00438-005-0012-9 16034625
Variability, recombination and mosaic evolution of the barley BARE-1 retrotransposon
10.1007/s00239-004-0168-7 16034651
Vicient CM Kalendar R Schulman AH Variability, recombination and mosaic evolution of the barley BARE-1 retrotransposon J Mol Evol 2005 61 275-291 10.1007/s00239-004-0168-7 16034651
LTR_STRUC: A novel search and identification program for LTR retrotransposons
10.1093/bioinformatics/btf878 12584121
McCarthy EM McDonald JF LTR_STRUC: A novel search and identification program for LTR retrotransposons Bioinformatics 2003 19 362-367 10.1093/ bioinformatics/btf878 12584121
The regulatory regions required for B' paramutation and expression are located far upstream of the maize b1 transcribed sequences
1462281 12399399
Stam M Belele C Ramakrishna W Dorweiler JE Bennetzen JL Chandler VL The regulatory regions required for B' paramutation and expression are located far upstream of the maize b1 transcribed sequences Genetics 2002 162 917-930 1462281 12399399
Advent of a new retrotransposon structure: The long form of the Veju elements
10.1007/s10709-005-7926-3 16247703
Sabot F Sourdille P Bernard M Advent of a new retrotransposon structure: the long form of the Veju elements Genetica 2005 125 325-335 10.1007/ s10709-005-7926-3 16247703
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
10.1016/0378-1119(95)00714-8 8566757
Sonnhammer EL Durbin R A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis Gene 1995 167 GC1-10 10.1016/0378-1119(95)00714-8 8566757
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
10.1093/nar/22.22.4673
Thompson JD Higgins DG Gibson TJ CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 1997 22 4673-4680 10.1093/nar/22.22.4673