메뉴 건너뛰기




Volumn 22, Issue 1, 2005, Pages 51-62

Patterns of polymorphism and divergence from noncoding sequences of Drosophila melanogaster and D. simulans: Evidence for nonequilibrium processes

Author keywords

Base composition; Divergence; Drosophila; Introns; Noncoding DNA; Polymorphism

Indexed keywords

ARTICLE; CONTROLLED STUDY; DNA BASE COMPOSITION; DROSOPHILA MELANOGASTER; DROSOPHILA SIMULANS; EXON; GENETIC POLYMORPHISM; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; INTRON; MAXIMUM LIKELIHOOD METHOD; NONHUMAN; NUCLEOTIDE SEQUENCE; PARSIMONY ANALYSIS; SPECIES COMPARISON;

EID: 10344256696     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msh269     Document Type: Article
Times cited : (40)

References (75)
  • 1
    • 0034708480 scopus 로고    scopus 로고
    • The genome sequence of Drosophila melanogaster
    • Adams, M. D., S. E. Celnicker, R. A. Holt, C. A. Evans, et al. 2000. The genome sequence of Drosophila melanogaster. Science 287:2185-2195.
    • (2000) Science , vol.287 , pp. 2185-2195
    • Adams, M.D.1    Celnicker, S.E.2    Holt, R.A.3    Evans, C.A.4
  • 2
    • 0028220048 scopus 로고
    • Synonymous codon usage in Drosophila melanogaster: Natural selection and translational accuracy
    • Akashi, H. 1994. Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy. Genetics 136:927-935.
    • (1994) Genetics , vol.136 , pp. 927-935
    • Akashi, H.1
  • 3
    • 0028797897 scopus 로고
    • Inferring weak selection from patterns of polymorphism and divergence at silent sites in Drosophila
    • _. 1995. Inferring weak selection from patterns of polymorphism and divergence at silent sites in Drosophila. Genetics 139:1067-1076.
    • (1995) Genetics , vol.139 , pp. 1067-1076
  • 4
    • 0029985179 scopus 로고    scopus 로고
    • Molecular evolution between Drosophilia melanogaster and D. simulans: Reduced codon bias, faster rates of amino acid substitution and larger proteins in D. melanogaster
    • _. 1996. Molecular evolution between Drosophilia melanogaster and D. simulans: reduced codon bias, faster rates of amino acid substitution and larger proteins in D. melanogaster. Genetics 144:1297-1307.
    • (1996) Genetics , vol.144 , pp. 1297-1307
  • 5
    • 0031303812 scopus 로고    scopus 로고
    • Distinguishing the effects of mutational biases and natural selection on DNA sequence variation
    • _. 1997. Distinguishing the effects of mutational biases and natural selection on DNA sequence variation. Genetics 147:1983-1987.
    • (1997) Genetics , vol.147 , pp. 1983-1987
  • 6
    • 0035107550 scopus 로고    scopus 로고
    • Contrasting patterns of X-linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans
    • Andolfatto, P. 2001. Contrasting patterns of X-linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans. Mol. Biol. Evol. 18:279-290.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 279-290
    • Andolfatto, P.1
  • 7
    • 0026091834 scopus 로고
    • Two expressed human genes sustain slightly more DNA damage after alkylating agent treatment than an inactive gene
    • Bartlett, J. D., A., Scicchitano, and S. H. Robison. 1991. Two expressed human genes sustain slightly more DNA damage after alkylating agent treatment than an inactive gene. Mutat. Res. 255:247-256.
    • (1991) Mutat. Res. , vol.255 , pp. 247-256
    • Bartlett, J.D.1    Scicchitano, A.2    Robison, S.H.3
  • 8
    • 0034938613 scopus 로고    scopus 로고
    • The frequency distribution of nucleotide variation in Drosophila simulans
    • _. 2001. The frequency distribution of nucleotide variation in Drosophila simulans. Mol. Biol. Evol. 18:1343-1352.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1343-1352
  • 9
    • 0026529344 scopus 로고
    • Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster
    • Begun, D. J., and C. F. Aquadro. 1992. Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356:519-520.
    • (1992) Nature , vol.356 , pp. 519-520
    • Begun, D.J.1    Aquadro, C.F.2
  • 10
    • 0029022711 scopus 로고
    • Molecular variation at the vermilion locus in geographically diverse populations of Drosophila melanogaster and Drosophila simulans
    • _. 1995. Molecular variation at the vermilion locus in geographically diverse populations of Drosophila melanogaster and Drosophila simulans. Genetics 140:1019-1032.
    • (1995) Genetics , vol.140 , pp. 1019-1032
  • 11
    • 0032731663 scopus 로고    scopus 로고
    • Is the fast/slow allozyme variation at the Adh locus of Drosophila melanogaster an ancient balanced polymorphism?
    • Begun, D. J., A. J. Betancourt, C. H. Langley, and W. Stephan. 1999. Is the fast/slow allozyme variation at the Adh locus of Drosophila melanogaster an ancient balanced polymorphism? Mol. Biol. Evol. 16:1816-1819.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1816-1819
    • Begun, D.J.1    Betancourt, A.J.2    Langley, C.H.3    Stephan, W.4
  • 12
    • 0034705169 scopus 로고    scopus 로고
    • Reduced X-linked nucleotide polymorphism in Drosophila simulans
    • Begun, D. J., and P. Whitley. 2000. Reduced X-linked nucleotide polymorphism in Drosophila simulans. Proc. Natl. Acad. Sci. USA 97:5960-5965.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 5960-5965
    • Begun, D.J.1    Whitley, P.2
  • 13
    • 0036964070 scopus 로고    scopus 로고
    • Molecular population genetics of Xdh and the evolution of base competition in Drosophila
    • _. 2003. Molecular population genetics of Xdh and the evolution of base competition in Drosophila. Genetics 162:1725-1735.
    • (2003) Genetics , vol.162 , pp. 1725-1735
  • 14
    • 0034536254 scopus 로고    scopus 로고
    • Molecular population genetics of male accessory gland proteins in Drosophila
    • Begun, D. J., P. Whitley, B. L. Todd, H. M. Waldrip-Dail, A. G. Clark. 2000. Molecular population genetics of male accessory gland proteins in Drosophila. Genetics 156:1879-1888.
    • (2000) Genetics , vol.156 , pp. 1879-1888
    • Begun, D.J.1    Whitley, P.2    Todd, B.L.3    Waldrip-Dail, H.M.4    Clark, A.G.5
  • 15
    • 0034883255 scopus 로고    scopus 로고
    • Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences
    • Bergman, C. M., and M. Kreitman. 2001. Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences. Genome Res. 11:1335-1345.
    • (2001) Genome Res. , vol.11 , pp. 1335-1345
    • Bergman, C.M.1    Kreitman, M.2
  • 16
    • 0026322339 scopus 로고
    • Lack of polymorphism on the Drosophila fourth chromosome resulting from selection
    • Berry, A. J., J. W. Ajioka, and M. Kreitman. 1991 Lack of polymorphism on the Drosophila fourth chromosome resulting from selection. Genetics 129:1111-1117.
    • (1991) Genetics , vol.129 , pp. 1111-1117
    • Berry, A.J.1    Ajioka, J.W.2    Kreitman, M.3
  • 17
    • 0030063546 scopus 로고    scopus 로고
    • Length variation and secondary structure of introns in the Mlcl gene in six species of Drosophila
    • Clark, A. G., B. G. Leicht, and S. V. Muse. 1996. Length variation and secondary structure of introns in the Mlcl gene in six species of Drosophila. Mol. Biol. Evol. 13:481-482.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 481-482
    • Clark, A.G.1    Leicht, B.G.2    Muse, S.V.3
  • 18
    • 0024616907 scopus 로고
    • Amino acid polymorphisms for esterase-6 in Drosophila melanogaster
    • Cooke, P. H., and J. G. Oakeshott. 1989. Amino acid polymorphisms for esterase-6 in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 86:1426-1430.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 1426-1430
    • Cooke, P.H.1    Oakeshott, J.G.2
  • 19
    • 0026670773 scopus 로고
    • Neither enhanced removal of cyclobutane pyrimidine dimers nor strand-specific repair is found after transcription induction of the beta 3- tubulin gene in a Drosophila embryonic cell line Kc
    • de Cock, J. G., E. C. Klink, W. Ferro, P. H. Lohman, and J. C. Eeken. 1992. Neither enhanced removal of cyclobutane pyrimidine dimers nor strand-specific repair is found after transcription induction of the beta 3- tubulin gene in a Drosophila embryonic cell line Kc. Mutat. Res. 293:11-20.
    • (1992) Mutat. Res. , vol.293 , pp. 11-20
    • De Cock, J.G.1    Klink, E.C.2    Ferro, W.3    Lohman, P.H.4    Eeken, J.C.5
  • 20
    • 0027304241 scopus 로고
    • Evidence for adaptive evolution of the G6pd gene in the Drosophila melanogaster and Drosophila simulans lineages
    • Eanes, W. F., M. Kirchner, and J. Yoon. 1993. Evidence for adaptive evolution of the G6pd gene in the Drosophila melanogaster and Drosophila simulans lineages. Proc. Natl. Acad. Sci. USA 90:7475-7479.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 7475-7479
    • Eanes, W.F.1    Kirchner, M.2    Yoon, J.3
  • 21
    • 0029910046 scopus 로고    scopus 로고
    • Historical selection, amino acid polymorphism and lineage-specific divergence at the G6pd locus in Drosophila melanogaster and D. simulans
    • Eanes, W. F., M. Kirchner, J. Yoon, C. H. Biermann, I. N. Wang, M. A. McCartney, and B. C. Verrelli. 1996. Historical selection, amino acid polymorphism and lineage-specific divergence at the G6pd locus in Drosophila melanogaster and D. simulans. Genetics 144:1027-1041.
    • (1996) Genetics , vol.144 , pp. 1027-1041
    • Eanes, W.F.1    Kirchner, M.2    Yoon, J.3    Biermann, C.H.4    Wang, I.N.5    McCartney, M.A.6    Verrelli, B.C.7
  • 22
    • 0023472043 scopus 로고
    • The spontaneous mutation rate in Drosophila simulans
    • Eeken, J. C., A. W. de Jong, and M. M. Green. 1987. The spontaneous mutation rate in Drosophila simulans. Mutat. Res. 192:259-262.
    • (1987) Mutat. Res. , vol.192 , pp. 259-262
    • Eeken, J.C.1    De Jong, A.W.2    Green, M.M.3
  • 23
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing, B., and P. Green. 1998. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8:186-194.
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 24
    • 0031955518 scopus 로고    scopus 로고
    • Basecalling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing, B., L. Hillier, M. C. Wendl, and P. Green. 1998. Basecalling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8:175-185.
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 25
    • 0027183991 scopus 로고
    • Recombination and mammalian genome evolution
    • Eyre-Walker, A. 1993. Recombination and mammalian genome evolution. Proc. R. Soc. Lond. B Biol. Sci. 252:237-243.
    • (1993) Proc. R. Soc. Lond. B Biol. Sci. , vol.252 , pp. 237-243
    • Eyre-Walker, A.1
  • 26
    • 0031303811 scopus 로고    scopus 로고
    • Differentiating between selection and mutation bias
    • _. 1997. Differentiating between selection and mutation bias. Genetics 147:1983-1987.
    • (1997) Genetics , vol.147 , pp. 1983-1987
  • 27
    • 0033018384 scopus 로고    scopus 로고
    • Evidence of selection on silent base composition in mammals: Potential implications for the evolution of isochores and junk DNA
    • _. 1999. Evidence of selection on silent base composition in mammals: potential implications for the evolution of isochores and junk DNA. Genetics 152:675-683.
    • (1999) Genetics , vol.152 , pp. 675-683
  • 29
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • Gordon, D., C. Abajian, and P. Green. 1998. Consed: a graphical tool for sequence finishing. Genome Res. 8:195-202.
    • (1998) Genome Res. , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 30
    • 0037380022 scopus 로고    scopus 로고
    • Transcription-associated mutational asymmetry in mammalian evolution
    • Green, P., B. Ewing, W. Miller, P. J. Thomas, and E. D. Green, NISC Comparative Sequencing Program. 2003. Transcription-associated mutational asymmetry in mammalian evolution. Nat. Genet. 33:514-517.
    • (2003) Nat. Genet. , vol.33 , pp. 514-517
    • Green, P.1    Ewing, B.2    Miller, W.3    Thomas, P.J.4    Green, E.D.5
  • 31
    • 1242296827 scopus 로고    scopus 로고
    • Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila
    • Halligan, D. L., A. Eyre-Walker, P. Andolfatto, and P. D. Keightley. 2004. Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila. Genome Res. 14:273-279.
    • (2004) Genome Res. , vol.14 , pp. 273-279
    • Halligan, D.L.1    Eyre-Walker, A.2    Andolfatto, P.3    Keightley, P.D.4
  • 32
    • 0030455821 scopus 로고    scopus 로고
    • Contrasting histories of three gene regions associated with In(3L)Payne of Drosophila melanogaster
    • Hasson, E. and W. F. Eanes. 1996. Contrasting histories of three gene regions associated with In(3L)Payne of Drosophila melanogaster. Genetics 144:1565-1575.
    • (1996) Genetics , vol.144 , pp. 1565-1575
    • Hasson, E.1    Eanes, W.F.2
  • 33
    • 0031843062 scopus 로고    scopus 로고
    • Nucleotide variation in the triosephosphate isomerase (Tpi) locus of Drosophila
    • Hasson, E., I. N. Wang, L. W. Zeng, M. Kreitman, and W. F. Eanes. 1998. Nucleotide variation in the triosephosphate isomerase (Tpi) locus of Drosophila. Mol. Biol. Evol. 15:756-769.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 756-769
    • Hasson, E.1    Wang, I.N.2    Zeng, L.W.3    Kreitman, M.4    Eanes, W.F.5
  • 34
    • 77956890234 scopus 로고
    • Monte Carlo sampling methods using Markov chains and their applications
    • Hastings, W. K. 1970. Monte Carlo sampling methods using Markov chains and their applications. Biometrika 57:97-109.
    • (1970) Biometrika , vol.57 , pp. 97-109
    • Hastings, W.K.1
  • 35
    • 0000586830 scopus 로고
    • Using hitchhiking genes to study adaptation and divergence during speciation with the Drosophila melanogaster complex
    • Hilton, H., R. M. Kliman, and J. Hey. 1994. Using hitchhiking genes to study adaptation and divergence during speciation with the Drosophila melanogaster complex. Evolution 48:1900-1913.
    • (1994) Evolution , vol.48 , pp. 1900-1913
    • Hilton, H.1    Kliman, R.M.2    Hey, J.3
  • 36
    • 0026890665 scopus 로고
    • Chromosome bands, their chromatin flavors and their functional features
    • Holmquist, G. P. 1992. Chromosome bands, their chromatin flavors and their functional features. Am. J. Hum. Genet. 51:17-37.
    • (1992) Am. J. Hum. Genet. , vol.51 , pp. 17-37
    • Holmquist, G.P.1
  • 37
    • 0023339852 scopus 로고
    • A test of the neutral molecular evolution based on nucleotide data
    • Hudson, R. R., M. Kreitman, and M. Aguade. 1987. A test of the neutral molecular evolution based on nucleotide data. Genetics 116:153-159.
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.1    Kreitman, M.2    Aguade, M.3
  • 38
    • 0024372736 scopus 로고
    • The "hitchhiking effect" revisited
    • Kaplan, N. L., R. R. Hudson, and C. H. Langley. 1989. The "hitchhiking effect" revisited. Genetics 123:887-899.
    • (1989) Genetics , vol.123 , pp. 887-899
    • Kaplan, N.L.1    Hudson, R.R.2    Langley, C.H.3
  • 39
    • 0027863993 scopus 로고
    • Conservation and change in structural and 5' flanking sequences of esterase 6 in sibling Drosophila species
    • Karotam, J., A. C. Delves, and J. G. Oakeshott. 1993. Conservation and change in structural and 5' flanking sequences of esterase 6 in sibling Drosophila species. Genetica 90:11-28.
    • (1993) Genetica , vol.90 , pp. 11-28
    • Karotam, J.1    Delves, A.C.2    Oakeshott, J.G.3
  • 40
    • 0346991744 scopus 로고    scopus 로고
    • A microsatellite variability screen for positive selection associated with the "out of Africa" habitat expansion of Drosophila melanogaster
    • Kauer, M. O., D. Dieringer, and C. Schlotterer. 2003. A microsatellite variability screen for positive selection associated with the "out of Africa" habitat expansion of Drosophila melanogaster. Genetics 165:1137-1148.
    • (2003) Genetics , vol.165 , pp. 1137-1148
    • Kauer, M.O.1    Dieringer, D.2    Schlotterer, C.3
  • 41
    • 3142695506 scopus 로고    scopus 로고
    • Molecular population genetics of male accessory gland proteins in the Drosophila simulans complex
    • Kern, A. D., C. D. Jones, and D. J. Begun. 2004. Molecular population genetics of male accessory gland proteins in the Drosophila simulans complex. Genetics 167:725-735.
    • (2004) Genetics , vol.167 , pp. 725-735
    • Kern, A.D.1    Jones, C.D.2    Begun, D.J.3
  • 43
    • 0027383354 scopus 로고
    • Reduced natural selection associated with low recombination in Drosophila melanogaster
    • Kliman, R. M., and J. Hey. 1993. Reduced natural selection associated with low recombination in Drosophila melanogaster. Mol. Biol. Evol. 10:1239-1258.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1239-1258
    • Kliman, R.M.1    Hey, J.2
  • 45
    • 0029063189 scopus 로고
    • Interplay between chromatin structure and transcription
    • Kornberg, R. D., and Y. Lorch. 1995. Interplay between chromatin structure and transcription. Curr. Opin. Cell. Biol. 7:371-375.
    • (1995) Curr. Opin. Cell. Biol. , vol.7 , pp. 371-375
    • Kornberg, R.D.1    Lorch, Y.2
  • 46
    • 0020560127 scopus 로고
    • Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster
    • Kreitman, M. 1983. Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster. Nature 304:412-417.
    • (1983) Nature , vol.304 , pp. 412-417
    • Kreitman, M.1
  • 47
    • 0027450803 scopus 로고
    • Lack of correlation between interspecific divergence and intraspecific polymorphism at the suppressor of forked region in Drosophila melanogaster and Drosophila simulans
    • Langley, C. H., J. MacDonald, N. Miyashita, and M. Aguadé. 1993. Lack of correlation between interspecific divergence and intraspecific polymorphism at the suppressor of forked region in Drosophila melanogaster and Drosophila simulans. Proc. Natl. Acad. Sci. USA 90:1800-1803.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 1800-1803
    • Langley, C.H.1    MacDonald, J.2    Miyashita, N.3    Aguadé, M.4
  • 48
    • 0028799521 scopus 로고
    • Constraints on intron evolution in the gene encoding the myosin alkali light chain in Drosophila
    • Leicht, B. G., S. V. Muse, and A. G. Clark. 1995. Constraints on intron evolution in the gene encoding the myosin alkali light chain in Drosophila. Genetics 139:299-308.
    • (1995) Genetics , vol.139 , pp. 299-308
    • Leicht, B.G.1    Muse, S.V.2    Clark, A.G.3
  • 49
    • 0026680209 scopus 로고
    • Efficient protection against oxidative damage in chromatin
    • Ljungman, M., and P. C. Hanawalt. 1992. Efficient protection against oxidative damage in chromatin. Mol. Carcinogen. 5:264-269.
    • (1992) Mol. Carcinogen. , vol.5 , pp. 264-269
    • Ljungman, M.1    Hanawalt, P.C.2
  • 50
    • 0042887665 scopus 로고    scopus 로고
    • Dependence of mutational asymmetry on gene-expression levels in the human genome
    • Majewski, J. 2003. Dependence of mutational asymmetry on gene-expression levels in the human genome. Am. J. Hum. Genet. 73:688-692.
    • (2003) Am. J. Hum. Genet. , vol.73 , pp. 688-692
    • Majewski, J.1
  • 51
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • Camb.
    • Maynard Smith, J., and J. Haigh. 1974. The hitch-hiking effect of a favourable gene. Genet. Res., Camb. 23:23-35.
    • (1974) Genet. Res. , vol.23 , pp. 23-35
    • Maynard Smith, J.1    Haigh, J.2
  • 52
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald, J. H., and M. Kreitman. 1991. Adaptive protein evolution at the Adh locus in Drosophila. Nature 351:652-654.
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 53
    • 0035157374 scopus 로고    scopus 로고
    • Inferring parameters of mutation, selection and demography from patterns of synonymous site evolution in Drosophila
    • McVean, G., and J. Vieira. 2001. Inferring parameters of mutation, selection and demography from patterns of synonymous site evolution in Drosophila. Genetics 157:245-257.
    • (2001) Genetics , vol.157 , pp. 245-257
    • McVean, G.1    Vieira, J.2
  • 55
    • 0032945593 scopus 로고    scopus 로고
    • DIALIGN 2: Improvement of the segment-to-segment approach to multiple sequence alignment
    • Morgenstern, B. 1999. DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. Bioinformatics 15:211-218.
    • (1999) Bioinformatics , vol.15 , pp. 211-218
    • Morgenstern, B.1
  • 56
    • 0030034357 scopus 로고    scopus 로고
    • Intraspecific nuclear DNA variation in Drosophila
    • Moriyama, E. N., and J. R. Powell. 1996. Intraspecific nuclear DNA variation in Drosophila. Mol. Biol. Evol. 13:261-277.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 261-277
    • Moriyama, E.N.1    Powell, J.R.2
  • 57
    • 0034754533 scopus 로고    scopus 로고
    • Patterns of DNA sequence variation suggest the recent action of positive selection in the janus-ocnus region of Drosophila simulans
    • Parsch, J., C. D. Meiklejohn, and D. L. Hartl. 2001. Patterns of DNA sequence variation suggest the recent action of positive selection in the janus-ocnus region of Drosophila simulans. Genetics 159:647-657.
    • (2001) Genetics , vol.159 , pp. 647-657
    • Parsch, J.1    Meiklejohn, C.D.2    Hartl, D.L.3
  • 58
    • 0347361692 scopus 로고    scopus 로고
    • Selective constraints on intron evolution in Drosophila
    • Parsch, J. 2003. Selective constraints on intron evolution in Drosophila. Genetics 165:1843-1851.
    • (2003) Genetics , vol.165 , pp. 1843-1851
    • Parsch, J.1
  • 59
    • 0343593596 scopus 로고
    • On the past history of an allele now known to have frequency P
    • Sawyer, S. 1977. On the past history of an allele now known to have frequency P. J. Appl. Prob. 14:439-450.
    • (1977) J. Appl. Prob. , vol.14 , pp. 439-450
    • Sawyer, S.1
  • 60
    • 0030928758 scopus 로고    scopus 로고
    • A screen for fast evolving genes from Drosophila
    • Schmid, K. J., and D. Tautz. 1997. A screen for fast evolving genes from Drosophila. Proc. Natl. Acad. Sci. USA 94:9746-9750.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 9746-9750
    • Schmid, K.J.1    Tautz, D.2
  • 61
    • 0034718541 scopus 로고    scopus 로고
    • Adaptive evolution of a candidate gene for aging in Drosophila
    • Schmidt, P. S., D. D. Duvernell, and W. F. Eanes. 2000. Adaptive evolution of a candidate gene for aging in Drosophila. Proc. Natl. Acad. Sci. USA 97:10861-10865.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 10861-10865
    • Schmidt, P.S.1    Duvernell, D.D.2    Eanes, W.F.3
  • 62
    • 0041317004 scopus 로고    scopus 로고
    • Natural selection drives Drosophila immune system evolution
    • Schlenke, T. A., and D. J. Begun. 2003. Natural selection drives Drosophila immune system evolution. Genetics 164:1471-1480.
    • (2003) Genetics , vol.164 , pp. 1471-1480
    • Schlenke, T.A.1    Begun, D.J.2
  • 63
    • 0034710295 scopus 로고    scopus 로고
    • DNA repair in Drosophila: Insights from the Drosophila genome sequence
    • Sekelsky, J. J., M. H. Brodsky, and K. C. Burtis. 2000. DNA repair in Drosophila: insights from the Drosophila genome sequence. J. Cell. Biol. 150:F31-36.
    • (2000) J. Cell. Biol. , vol.150
    • Sekelsky, J.J.1    Brodsky, M.H.2    Burtis, K.C.3
  • 64
    • 0027218267 scopus 로고
    • Directional mutation pressure, mutator mutations, and dynamics of molecular evolution
    • Sueoka, N. 1993. Directional mutation pressure, mutator mutations, and dynamics of molecular evolution. J. Mol. Evol. 37:137-153.
    • (1993) J. Mol. Evol. , vol.37 , pp. 137-153
    • Sueoka, N.1
  • 65
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima, F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 66
    • 0031777618 scopus 로고    scopus 로고
    • Rate variation of DNA sequence evolution in the Drosophila lineages
    • Takano, T. S. 1998. Rate variation of DNA sequence evolution in the Drosophila lineages. Genetics 149:959-970.
    • (1998) Genetics , vol.149 , pp. 959-970
    • Takano, T.S.1
  • 67
    • 0035058768 scopus 로고    scopus 로고
    • Local changes in the GC/AT substitution biases and in crossover frequencies on Drosophila chromosomes
    • _. 2001. Local changes in the GC/AT substitution biases and in crossover frequencies on Drosophila chromosomes. Mol. Biol. Evol. 18:606-619.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 606-619
  • 68
    • 0002671410 scopus 로고
    • Some probabilistic and statistical problems on the analysis of sequences
    • Tavaré, S. 1986. Some probabilistic and statistical problems on the analysis of sequences. Lect. Math. Life Sci. 17:368-376.
    • (1986) Lect. Math. Life Sci. , vol.17 , pp. 368-376
    • Tavaré, S.1
  • 69
    • 0025094423 scopus 로고
    • Molecular evolution in the Drosophila yakuba period locus
    • Thackeray, J. R., and C. P. Kyriacou. 1990. Molecular evolution in the Drosophila yakuba period locus. J. Mol. Evol. 31:389-401.
    • (1990) J. Mol. Evol. , vol.31 , pp. 389-401
    • Thackeray, J.R.1    Kyriacou, C.P.2
  • 70
    • 0027968068 scopus 로고
    • Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:383-402.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 383-402
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 71
    • 0030995101 scopus 로고    scopus 로고
    • The repair of UV-induced cyclobutane pyrimidine dimers in the individual genes Gart, Notch, and white from isolated brain tissue of Drosophila melanogaster
    • van der Helm, P. J., E. C. Klink, P. H. Lohman, and J. C. Eeken. 1997. The repair of UV-induced cyclobutane pyrimidine dimers in the individual genes Gart, Notch, and white from isolated brain tissue of Drosophila melanogaster. Mutat. Res. 383:113-124.
    • (1997) Mutat. Res. , vol.383 , pp. 113-124
    • Van Der Helm, P.J.1    Klink, E.C.2    Lohman, P.H.3    Eeken, J.C.4
  • 72
    • 0034533940 scopus 로고    scopus 로고
    • Extensive amino acid polymorphism at the pgm locus is consistent with adaptive protein evolution in Drosophila melanogaster
    • Verrelli, B. C., and W. F. Eanes. 2000. Extensive amino acid polymorphism at the pgm locus is consistent with adaptive protein evolution in Drosophila melanogaster. Genetics 156:1737-1752.
    • (2000) Genetics , vol.156 , pp. 1737-1752
    • Verrelli, B.C.1    Eanes, W.F.2
  • 73
    • 0036493276 scopus 로고    scopus 로고
    • Analysis of similarity within 142 pairs of orthologous intergenic regions of Caenorhabditis elegans and Caenorhabditis briggsae
    • Webb, C. T., S. A. Shabalina, A. Y. Ogurtsov, and A. S. Kondrashov. 2002. Analysis of similarity within 142 pairs of orthologous intergenic regions of Caenorhabditis elegans and Caenorhabditis briggsae. Nucleic Acids Res. 30:1233-1239.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1233-1239
    • Webb, C.T.1    Shabalina, S.A.2    Ogurtsov, A.Y.3    Kondrashov, A.S.4
  • 74
    • 0028820333 scopus 로고
    • A new method of inference of ancestral nucleotide and amino acid sequences
    • Yang, Z., S. Kumar, and M. Nei. 1995. A new method of inference of ancestral nucleotide and amino acid sequences. Genetics 141:1641-1650.
    • (1995) Genetics , vol.141 , pp. 1641-1650
    • Yang, Z.1    Kumar, S.2    Nei, M.3
  • 75
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang, Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:555-556.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.