-
1
-
-
0028220048
-
Synonymous codon usage in Drosophila melanogaster. Natural selection and translational accuracy
-
AKASHI, H., 1994 Synonymous codon usage in Drosophila melanogaster. Natural selection and translational accuracy. Genetics 136: 927-935.
-
(1994)
Genetics
, vol.136
, pp. 927-935
-
-
Akashi, H.1
-
2
-
-
0028797897
-
Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA
-
AKASHI, H., 1995 Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA. Genetics 139: 1067-1076.
-
(1995)
Genetics
, vol.139
, pp. 1067-1076
-
-
Akashi, H.1
-
3
-
-
0023057525
-
Diversity in G+C content at the third positions of codons in vertebrate genes and its cause
-
AOTA, S., and T. IKEMURA, 1986 Diversity in G+C content at the third positions of codons in vertebrate genes and its cause. Nucleic Acids Res. 14: 6345-6355.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 6345-6355
-
-
Aota, S.1
Ikemura, T.2
-
5
-
-
0022914759
-
Compositional constraints and genome evolution
-
BERNARDI, G., and G. BERNARDI, 1986 Compositional constraints and genome evolution. J. Mol. Evol. 24: 1-11.
-
(1986)
J. Mol. Evol.
, vol.24
, pp. 1-11
-
-
Bernardi, G.1
Bernardi, G.2
-
6
-
-
0023126266
-
Coevolution of codon usage and tRNA abundance
-
BULMER, M., 1987 Coevolution of codon usage and tRNA abundance. Nature 325: 728-730.
-
(1987)
Nature
, vol.325
, pp. 728-730
-
-
Bulmer, M.1
-
7
-
-
0025941139
-
The selection-mutation-drift theory of synonymous codon usage
-
BULMER, M., 1991 The selection-mutation-drift theory of synonymous codon usage. Genetics 129: 897-907.
-
(1991)
Genetics
, vol.129
, pp. 897-907
-
-
Bulmer, M.1
-
8
-
-
0018337789
-
Studies on tRNA adaptation, tRNA turnover, precursor tRNA and tRNA gene distribution in Bombix mori by using two-dimensional polyacrylmide gel electrophoresis
-
CHEVALLIER, A., and J. P. GAREL, 1979 Studies on tRNA adaptation, tRNA turnover, precursor tRNA and tRNA gene distribution in Bombix mori by using two-dimensional polyacrylmide gel electrophoresis. Biochemie 61: 245-262.
-
(1979)
Biochemie
, vol.61
, pp. 245-262
-
-
Chevallier, A.1
Garel, J.P.2
-
9
-
-
0029563023
-
A method for estimating the numbers of synonymous and nonsynonymous substitutions per site
-
COMERON, J. M., 1995 A method for estimating the numbers of synonymous and nonsynonymous substitutions per site. J. Mol. Evol. 41: 1152-1159.
-
(1995)
J. Mol. Evol.
, vol.41
, pp. 1152-1159
-
-
Comeron, J.M.1
-
10
-
-
0029914165
-
Synonymous substitutions in the Xdh gene of Drosophila: Heterogeneous distribution along the coding region
-
COMERON, J. M., and M. AGUADÉ, 1996 Synonymous substitutions in the Xdh gene of Drosophila: Heterogeneous distribution along the coding region. Genetics 144: 1053-1062.
-
(1996)
Genetics
, vol.144
, pp. 1053-1062
-
-
Comeron, J.M.1
Aguadé, M.2
-
11
-
-
0023192595
-
Correlation between molecular clock ticking, codon usage, fidelity of DNA repair, chromosome banding and chromatin compactness in germline cells
-
FILIPSKI, J., 1987 Correlation between molecular clock ticking, codon usage, fidelity of DNA repair, chromosome banding and chromatin compactness in germline cells. FEBS Lett. 217: 184-186.
-
(1987)
FEBS Lett.
, vol.217
, pp. 184-186
-
-
Filipski, J.1
-
12
-
-
0015162378
-
Rate of change of concomitantly variable codons
-
FITCH, W. M., 1971 Rate of change of concomitantly variable codons. J. Mol. Evol. 1: 84-96.
-
(1971)
J. Mol. Evol.
, vol.1
, pp. 84-96
-
-
Fitch, W.M.1
-
13
-
-
0000205114
-
The silkworm, a model for molecular and cellular biologist
-
GAREL, J. P., 1982 The silkworm, a model for molecular and cellular biologist. Trends Biochem. Sci. 7: 105-108.
-
(1982)
Trends Biochem. Sci.
, vol.7
, pp. 105-108
-
-
Garel, J.P.1
-
14
-
-
0022180868
-
Amino acid composition and the evolutionary rates of protein-coding genes
-
GRAUR, D., 1985 Amino acid composition and the evolutionary rates of protein-coding genes. J. Mol. Evol. 22: 53-63.
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 53-63
-
-
Graur, D.1
-
15
-
-
0020363515
-
Preferential codon usage in prokaryotic genes: The optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes
-
GROSJEAN, H., and W. FIERS, 1982 Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes. Gene 18: 199-209.
-
(1982)
Gene
, vol.18
, pp. 199-209
-
-
Grosjean, H.1
Fiers, W.2
-
16
-
-
0021958933
-
Codon usage and tRNA content in unicellular and multicellular organisms
-
IKEMURA, T., 1985 Codon usage and tRNA content in unicellular and multicellular organisms. Mol. Biol. Evol. 2: 13-34.
-
(1985)
Mol. Biol. Evol.
, vol.2
, pp. 13-34
-
-
Ikemura, T.1
-
17
-
-
0000732090
-
Evolution of protein molecules
-
edited by H. N. MUNRO. Academic Press, New York
-
JUKES, T. H., and C. R. CANTOR, 1969 Evolution of protein molecules, pp. 21-132 in Mammalian Protein Metabolism III, edited by H. N. MUNRO. Academic Press, New York.
-
(1969)
Mammalian Protein Metabolism
, vol.3
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
18
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
KIMURA, M., 1980 A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
20
-
-
0028040734
-
The effects of mutation and natural selection on codon bias in the genes of Drosophila
-
KLIMAN, R. M., and J. HEY, 1994 The effects of mutation and natural selection on codon bias in the genes of Drosophila. Genetics 137: 1049-1056.
-
(1994)
Genetics
, vol.137
, pp. 1049-1056
-
-
Kliman, R.M.1
Hey, J.2
-
21
-
-
0002214201
-
The population and evolutionary genetics of codon bias
-
edited by R. SING and C. KRIMBAS. Columbia University Press, New York. in press
-
KREITMAN, M., and M. ANTEZANA, 1998 The population and evolutionary genetics of codon bias, in Evolutionary Genetics from Molecules to Morphology, edited by R. SING and C. KRIMBAS. Columbia University Press, New York. (in press).
-
(1998)
Evolutionary Genetics from Molecules to Morphology
-
-
Kreitman, M.1
Antezana, M.2
-
22
-
-
0021712452
-
Interaction of silent and replacement changes in eukaryotic coding sequences
-
LIPMAN, D. J., and W. J. WILBUR, 1985 Interaction of silent and replacement changes in eukaryotic coding sequences. J. Mol. Evol. 21: 161-167.
-
(1985)
J. Mol. Evol.
, vol.21
, pp. 161-167
-
-
Lipman, D.J.1
Wilbur, W.J.2
-
23
-
-
0028922906
-
Testing the covarion hypothesis of molecular evolution
-
MIYAMOTO, M. M., and W. M. FITCH, 1995 Testing the covarion hypothesis of molecular evolution. Mol. Biol. Evol. 12: 503-513.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 503-513
-
-
Miyamoto, M.M.1
Fitch, W.M.2
-
24
-
-
0026725308
-
Rates of synonymous substitution and base composition of nuclear genes in Drosophila
-
MORIYAMA, E. N., and T. GOJOBORI, 1992 Rates of synonymous substitution and base composition of nuclear genes in Drosophila. Genetics 130: 855-864.
-
(1992)
Genetics
, vol.130
, pp. 855-864
-
-
Moriyama, E.N.1
Gojobori, T.2
-
25
-
-
0027153966
-
Codon usage bias and base composition of nuclear genes in Drosophila
-
MORIYAMA, E. N., and D. L. HARTL, 1993 Codon usage bias and base composition of nuclear genes in Drosophila. Genetics 134: 847-858.
-
(1993)
Genetics
, vol.134
, pp. 847-858
-
-
Moriyama, E.N.1
Hartl, D.L.2
-
26
-
-
0028932702
-
Frequencies of synonymous substitutions in mammals are gene-specific and correlated with frequencies of nonsynonymous substitutions
-
MOUCHIROUD, D., C. GAUTIER and G. BERNARDI, 1995 Frequencies of synonymous substitutions in mammals are gene-specific and correlated with frequencies of nonsynonymous substitutions. J. Mol. Evol. 40: 107-113.
-
(1995)
J. Mol. Evol.
, vol.40
, pp. 107-113
-
-
Mouchiroud, D.1
Gautier, C.2
Bernardi, G.3
-
27
-
-
0029583490
-
Variation in synonymous substitution rates among mammalian genes and the correlation between synonymous and nonsynonymous divergences
-
OHTA, T., and Y. INA, 1995 Variation in synonymous substitution rates among mammalian genes and the correlation between synonymous and nonsynonymous divergences. J. Mol. Evol. 41: 717-720.
-
(1995)
J. Mol. Evol.
, vol.41
, pp. 717-720
-
-
Ohta, T.1
Ina, Y.2
-
28
-
-
0031017384
-
Site-directed mutations reveal long-range compensatory interactions in the Adh gene of Drosophila melanogaster
-
PARSH, J., S. TANDA and W. STEPHAN, 1997 Site-directed mutations reveal long-range compensatory interactions in the Adh gene of Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 94: 928-933.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 928-933
-
-
Parsh, J.1
Tanda, S.2
Stephan, W.3
-
29
-
-
0023274170
-
The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias
-
SHARP, P. M., and W.-H. LI, 1987 The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias. Mol. Biol. Evol. 4: 222-230.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 222-230
-
-
Sharp, P.M.1
Li, W.-H.2
-
30
-
-
0024591558
-
On the rate of DNA sequence evolution in Drosophila
-
SHARP, P. M., and W.-H. LI, 1989 On the rate of DNA sequence evolution in Drosophila. J. Mol. Evol. 28: 398-402.
-
(1989)
J. Mol. Evol.
, vol.28
, pp. 398-402
-
-
Sharp, P.M.1
Li, W.-H.2
-
31
-
-
0023046874
-
Codon usage in yeast: Cluster analysis clearly differentiates highly and lowly expressed genes
-
SHARP, P. M., T. M. F. TUOHY and K. R. MOSURSKI, 1986 Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes. Nucleic Acids Res. 14: 5125-5139.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 5125-5139
-
-
Sharp, P.M.1
Tuohy, T.M.F.2
Mosurski, K.R.3
-
32
-
-
0024116811
-
"Silent" sites in Drosophila genes are not neutral: Evidence of selection among synonymous codons
-
SHIELDS, D. C., P. M. SHARP, D. G. HIGGINS and F. WRIGHT, 1988 "Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons. Mol. Biol. Evol. 5: 704-716.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 704-716
-
-
Shields, D.C.1
Sharp, P.M.2
Higgins, D.G.3
Wright, F.4
-
34
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
-
THOMPSON, J. D., D. G. HIGGINS and T. J. GIBSON, 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
35
-
-
0024596324
-
Nucleic acid composition, codon usage, and rate of synonymous substitution in protein-coding genes
-
TICHER, A., and D. GRAUR, 1989 Nucleic acid composition, codon usage, and rate of synonymous substitution in protein-coding genes. J. Mol. Evol. 28: 286-298.
-
(1989)
J. Mol. Evol.
, vol.28
, pp. 286-298
-
-
Ticher, A.1
Graur, D.2
-
36
-
-
0029946596
-
Evolutionary changes in the expression pattern of a developmentally essential gene in three Drosophila species
-
WANG, D., J. L. MARSH and F. J. AYALA, 1996 Evolutionary changes in the expression pattern of a developmentally essential gene in three Drosophila species. Proc. Natl. Acad. Sci. USA 93: 7103-7107.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 7103-7107
-
-
Wang, D.1
Marsh, J.L.2
Ayala, F.J.3
-
37
-
-
0029917485
-
Nucleotide variation at the Gpdh locus in the genus Drosophila
-
WELLS, R. S., 1996 Nucleotide variation at the Gpdh locus in the genus Drosophila. Genetics 143: 375-384.
-
(1996)
Genetics
, vol.143
, pp. 375-384
-
-
Wells, R.S.1
-
38
-
-
0015787150
-
Analysis of tRNAs during the development of Drosophila
-
WHITE, B. N., G. M. TENER, J. HOLDEN and D. T. SUZUKI, 1973 Analysis of tRNAs during the development of Drosophila. Dev. Biol. 33: 185-195.
-
(1973)
Dev. Biol.
, vol.33
, pp. 185-195
-
-
White, B.N.1
Tener, G.M.2
Holden, J.3
Suzuki, D.T.4
-
39
-
-
0027422858
-
Mammalian gene evolution: Nucleotide sequence divergence between mouse and rat
-
WOLFE, K. H., and P. M. SHARP, 1993 Mammalian gene evolution: Nucleotide sequence divergence between mouse and rat. J. Mol. Evol. 37: 441-456.
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 441-456
-
-
Wolfe, K.H.1
Sharp, P.M.2
-
40
-
-
0024497416
-
Mutation rates differ among regions of the mammalian genome
-
WOLFE, K. H., P. M. SHARP and W.-H. LI, 1989 Mutation rates differ among regions of the mammalian genome. Nature 337: 283-285.
-
(1989)
Nature
, vol.337
, pp. 283-285
-
-
Wolfe, K.H.1
Sharp, P.M.2
Li, W.-H.3
-
41
-
-
7344250636
-
The molecular clock revisited: The rate of synonymous vs. replacement change in Drosophila
-
ZENG, L.-W., J. M. COMERON, B. CHEN and M. KREITMAN, 1998 The molecular clock revisited: the rate of synonymous vs. replacement change in Drosophila. Genetica 102/103: 369-382.
-
(1998)
Genetica
, vol.102-103
, pp. 369-382
-
-
Zeng, L.-W.1
Comeron, J.M.2
Chen, B.3
Kreitman, M.4
|