-
1
-
-
0031954925
-
Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms
-
Wallin, E., and von Heijne, G. (1998) Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms. Protein Sci. 7, 1029-1038
-
(1998)
Protein Sci
, vol.7
, pp. 1029-1038
-
-
Wallin, E.1
von Heijne, G.2
-
2
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model. Application to complete genomes
-
Krogh, A., Larsson, B., von Heijne, G., and Sonnhammer, E. (2001) Predicting transmembrane protein topology with a hidden Markov model. Application to complete genomes. J. Mol. Biol. 305, 567-580
-
(2001)
J. Mol. Biol
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.4
-
3
-
-
0037020329
-
Drug design strategies for targeting G-protein-coupled receptors
-
Klabunde, T., and Hessler, G. (2002) Drug design strategies for targeting G-protein-coupled receptors. Chembiochem 3, 928-944
-
(2002)
Chembiochem
, vol.3
, pp. 928-944
-
-
Klabunde, T.1
Hessler, G.2
-
4
-
-
33745894174
-
Rationalizing membrane protein overexpression
-
Wagner, S., Bader, M. L., Drew, D., and de Gier, J. W. (2006) Rationalizing membrane protein overexpression. Trends Biotechnol. 24, 364-371
-
(2006)
Trends Biotechnol
, vol.24
, pp. 364-371
-
-
Wagner, S.1
Bader, M.L.2
Drew, D.3
de Gier, J.W.4
-
5
-
-
33746813576
-
Understanding recombinant expression of membrane proteins
-
Grisshammer, R. (2006) Understanding recombinant expression of membrane proteins. Curr. Opin. Biotechnol. 17, 337-340
-
(2006)
Curr. Opin. Biotechnol
, vol.17
, pp. 337-340
-
-
Grisshammer, R.1
-
6
-
-
0037450542
-
Assembly and overexpression of membrane proteins in Escherichia coli
-
Drew, D., Fröderberg, L., Baars, L., and de Gier, J. W. (2003) Assembly and overexpression of membrane proteins in Escherichia coli. Biochim. Biophys. Acta 1610, 3-10
-
(2003)
Biochim. Biophys. Acta
, vol.1610
, pp. 3-10
-
-
Drew, D.1
Fröderberg, L.2
Baars, L.3
de Gier, J.W.4
-
7
-
-
23644458922
-
A scalable, GFP-based pipeline for membrane protein overexpression screening and purification
-
Drew, D., Slotboom, D. J., Friso, G., Reda, T., Genevaux, P., Rapp, M., Meindl-Beinker, N. M., Lambert, W., Lerch, M., Daley, D. O., Van Wijk, K. J., Hirst, J., Kunji, E., and De Gier, J. W. (2005) A scalable, GFP-based pipeline for membrane protein overexpression screening and purification. Protein Sci. 14, 2011-2017
-
(2005)
Protein Sci
, vol.14
, pp. 2011-2017
-
-
Drew, D.1
Slotboom, D.J.2
Friso, G.3
Reda, T.4
Genevaux, P.5
Rapp, M.6
Meindl-Beinker, N.M.7
Lambert, W.8
Lerch, M.9
Daley, D.O.10
Van Wijk, K.J.11
Hirst, J.12
Kunji, E.13
De Gier, J.W.14
-
8
-
-
33645454462
-
Optimization of membrane protein overexpression and purification using GFP fusions
-
Drew, D., Lerch, M., Kunji, E., Slotboom, D. J., and de Gier, J. W. (2006) Optimization of membrane protein overexpression and purification using GFP fusions. Nat. Methods 3, 303-313
-
(2006)
Nat. Methods
, vol.3
, pp. 303-313
-
-
Drew, D.1
Lerch, M.2
Kunji, E.3
Slotboom, D.J.4
de Gier, J.W.5
-
9
-
-
27144463438
-
Biogenesis of inner membrane proteins in Escherichia coli
-
Luirink, J., von Heijne, G., Houben, E., and de Gier, J. W. (2005) Biogenesis of inner membrane proteins in Escherichia coli. Annu. Rev. Microbiol. 59, 329-355
-
(2005)
Annu. Rev. Microbiol
, vol.59
, pp. 329-355
-
-
Luirink, J.1
von Heijne, G.2
Houben, E.3
de Gier, J.W.4
-
10
-
-
8844239874
-
SRP-mediated protein targeting: Structure and function revisited
-
Luirink, J., and Sinning, I. (2004) SRP-mediated protein targeting: structure and function revisited. Biochim. Biophys. Acta 1694, 17-35
-
(2004)
Biochim. Biophys. Acta
, vol.1694
, pp. 17-35
-
-
Luirink, J.1
Sinning, I.2
-
11
-
-
27844485836
-
Protein translocation by the Sec61/SecY channel
-
Osborne, A. R., Rapoport, T. A., and van den Berg, B. (2005) Protein translocation by the Sec61/SecY channel. Annu. Rev. Cell Dev. Biol. 21, 529-550
-
(2005)
Annu. Rev. Cell Dev. Biol
, vol.21
, pp. 529-550
-
-
Osborne, A.R.1
Rapoport, T.A.2
van den Berg, B.3
-
12
-
-
0027473683
-
Sec dependent and sec independent assembly of E. coli inner membrane proteins: The topological rules depend on chain length
-
Andersson, H., and von Heijne, G. (1993) Sec dependent and sec independent assembly of E. coli inner membrane proteins: the topological rules depend on chain length. EMBO J. 12, 683-691
-
(1993)
EMBO J
, vol.12
, pp. 683-691
-
-
Andersson, H.1
von Heijne, G.2
-
13
-
-
2442585126
-
Role of YidC in folding of polytopic membrane proteins
-
Nagamori, S., Smirnova, I. N., and Kaback, H. R. (2004) Role of YidC in folding of polytopic membrane proteins. J. Cell Biol. 165, 53-62
-
(2004)
J. Cell Biol
, vol.165
, pp. 53-62
-
-
Nagamori, S.1
Smirnova, I.N.2
Kaback, H.R.3
-
14
-
-
15744397061
-
YidC - an evolutionary conserved device for the assembly of energy-transducing membrane protein complexes
-
van der Laan, M., Nouwen, N. P., and Driessen, A. J. (2005) YidC - an evolutionary conserved device for the assembly of energy-transducing membrane protein complexes. Curr. Opin. Microbiol. 8, 182-187
-
(2005)
Curr. Opin. Microbiol
, vol.8
, pp. 182-187
-
-
van der Laan, M.1
Nouwen, N.P.2
Driessen, A.J.3
-
15
-
-
0036809395
-
SecB, one small chaperone in the complex milieu of the cell
-
Randall, L. L., and Hardy, S. J. (2002) SecB, one small chaperone in the complex milieu of the cell. CMLS Cell. Mol. Life Sci. 59, 1617-1623
-
(2002)
CMLS Cell. Mol. Life Sci
, vol.59
, pp. 1617-1623
-
-
Randall, L.L.1
Hardy, S.J.2
-
16
-
-
0035477117
-
The Sec protein-translocation pathway
-
Mori, H., and Ito, K. (2001) The Sec protein-translocation pathway. Trends Microbiol. 9, 494-500
-
(2001)
Trends Microbiol
, vol.9
, pp. 494-500
-
-
Mori, H.1
Ito, K.2
-
17
-
-
0032079702
-
The Escherichia coli SRP and SecB targeting pathways converge at the translocon
-
Valent, Q. A., Scotti, P. A., High, S., de Gier, J. W., von Heijne, G., Lentzen, G., Wintermeyer, W., Oudega, B., and Luirink, J. (1998) The Escherichia coli SRP and SecB targeting pathways converge at the translocon. EMBO J. 17, 2504-2512
-
(1998)
EMBO J
, vol.17
, pp. 2504-2512
-
-
Valent, Q.A.1
Scotti, P.A.2
High, S.3
de Gier, J.W.4
von Heijne, G.5
Lentzen, G.6
Wintermeyer, W.7
Oudega, B.8
Luirink, J.9
-
18
-
-
33747058216
-
A camel passes through the eye of a needle: Protein unfolding activity of Clp ATPases
-
Zolkiewski, M. (2006) A camel passes through the eye of a needle: protein unfolding activity of Clp ATPases. Mol. Microbiol. 61, 1094-1100
-
(2006)
Mol. Microbiol
, vol.61
, pp. 1094-1100
-
-
Zolkiewski, M.1
-
19
-
-
25844456936
-
Proteolytic activity of HtpX, a membrane-bound and stress-controlled protease from Escherichia coli
-
Sakoh, M., Ito, K., and Akiyama, Y. (2005) Proteolytic activity of HtpX, a membrane-bound and stress-controlled protease from Escherichia coli. J. Biol. Chem. 280, 33305-33310
-
(2005)
J. Biol. Chem
, vol.280
, pp. 33305-33310
-
-
Sakoh, M.1
Ito, K.2
Akiyama, Y.3
-
20
-
-
25844525796
-
Cellular functions, mechanism of action, and regulation of FtsH protease
-
Ito, K., and Akiyama, Y. (2005) Cellular functions, mechanism of action, and regulation of FtsH protease. Annu. Rev. Microbiol. 59, 211-231
-
(2005)
Annu. Rev. Microbiol
, vol.59
, pp. 211-231
-
-
Ito, K.1
Akiyama, Y.2
-
21
-
-
0033015460
-
Rapid protein-folding assay using green fluorescent protein
-
Waldo, G. S., Standish, B. M., Berendzen, J., and Terwilliger, T. C. (1999) Rapid protein-folding assay using green fluorescent protein. Nat. Biotechnol. 17, 691-695
-
(1999)
Nat. Biotechnol
, vol.17
, pp. 691-695
-
-
Waldo, G.S.1
Standish, B.M.2
Berendzen, J.3
Terwilliger, T.C.4
-
22
-
-
3142707454
-
The application of multi-parameter flow cytometry to monitor individual microbial cell physiological state
-
Hewitt, C. J., and Nebe-Von-Caron, G. (2004) The application of multi-parameter flow cytometry to monitor individual microbial cell physiological state. Adv. Biochem. Eng. Biotechnol. 89, 197-223
-
(2004)
Adv. Biochem. Eng. Biotechnol
, vol.89
, pp. 197-223
-
-
Hewitt, C.J.1
Nebe-Von-Caron, G.2
-
23
-
-
33645051465
-
DNA repair, a novel antibacterial target: Holliday junction-trapping peptides induce DNA damage and chromosome segregation defects
-
Gunderson, C. W., and Segall, A. M. (2006) DNA repair, a novel antibacterial target: Holliday junction-trapping peptides induce DNA damage and chromosome segregation defects. Mol. Microbiol. 59, 1129-1148
-
(2006)
Mol. Microbiol
, vol.59
, pp. 1129-1148
-
-
Gunderson, C.W.1
Segall, A.M.2
-
24
-
-
33744522928
-
Defining the role of the Escherichia coli chaperone SecB using comparative proteomics
-
Baars, L., Ytterberg, A. J., Drew, D., Wagner, S., Thilo, C., van Wijk, K. J., and de Gier, J. W. (2006) Defining the role of the Escherichia coli chaperone SecB using comparative proteomics. J. Biol. Chem. 281, 10024-10034
-
(2006)
J. Biol. Chem
, vol.281
, pp. 10024-10034
-
-
Baars, L.1
Ytterberg, A.J.2
Drew, D.3
Wagner, S.4
Thilo, C.5
van Wijk, K.J.6
de Gier, J.W.7
-
25
-
-
0041462889
-
Proteomic analysis of the Escherichia coli outer membrane
-
Molloy, M. P., Herbert, B. R., Slade, M. B., Rabilloud, T., Nouwens, A. S., Williams, K. L., and Gooley, A. A. (2000) Proteomic analysis of the Escherichia coli outer membrane. Eur. J. Biochem. 267, 2871-2881
-
(2000)
Eur. J. Biochem
, vol.267
, pp. 2871-2881
-
-
Molloy, M.P.1
Herbert, B.R.2
Slade, M.B.3
Rabilloud, T.4
Nouwens, A.S.5
Williams, K.L.6
Gooley, A.A.7
-
26
-
-
0000544299
-
A simplified ultrasensitive silver stain for detecting proteins in polyacrylamide gels
-
Oakley, B. R., Kirsch, D. R., and Morris, N. R. (1980) A simplified ultrasensitive silver stain for detecting proteins in polyacrylamide gels. Anal. Biochem. 105, 361-363
-
(1980)
Anal. Biochem
, vol.105
, pp. 361-363
-
-
Oakley, B.R.1
Kirsch, D.R.2
Morris, N.R.3
-
27
-
-
0029927505
-
Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels
-
Shevchenko, A., Wilm, M., Vorm, O., and Mann, M. (1996) Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal Chem. 68, 850-858
-
(1996)
Anal Chem
, vol.68
, pp. 850-858
-
-
Shevchenko, A.1
Wilm, M.2
Vorm, O.3
Mann, M.4
-
28
-
-
0035029482
-
Genetic dissection of the roles of chaperones and proteases in protein folding and degradation in the Escherichia coli cytosol
-
Tomoyasu, T., Mogk, A., Langen, H., Goloubinoff, P., and Bukau, B. (2001) Genetic dissection of the roles of chaperones and proteases in protein folding and degradation in the Escherichia coli cytosol. Mol. Microbiol. 40, 397-413
-
(2001)
Mol. Microbiol
, vol.40
, pp. 397-413
-
-
Tomoyasu, T.1
Mogk, A.2
Langen, H.3
Goloubinoff, P.4
Bukau, B.5
-
29
-
-
10344242448
-
New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy
-
Peltier, J. B., Ytterberg, A. J., Sun, Q., and van Wijk, K. J. (2004) New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. J. Biol. Chem. 279, 49367-49383
-
(2004)
J. Biol. Chem
, vol.279
, pp. 49367-49383
-
-
Peltier, J.B.1
Ytterberg, A.J.2
Sun, Q.3
van Wijk, K.J.4
-
30
-
-
33645518016
-
New Escherchia coli outer membrane proteins identified through prediction and experimental verification
-
Marani, P., Wagner, S., Baars, L., Genevaux, P., de Gier, J. W., Nilsson, I., Casadio, R., and von Heijne, G. (2006) New Escherchia coli outer membrane proteins identified through prediction and experimental verification. Protein Sci. 15, 884-889
-
(2006)
Protein Sci
, vol.15
, pp. 884-889
-
-
Marani, P.1
Wagner, S.2
Baars, L.3
Genevaux, P.4
de Gier, J.W.5
Nilsson, I.6
Casadio, R.7
von Heijne, G.8
-
31
-
-
0026409298
-
Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form
-
Schagger, H., and von Jagow, G. (1991) Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form. Anal. Biochem. 199, 223-231
-
(1991)
Anal. Biochem
, vol.199
, pp. 223-231
-
-
Schagger, H.1
von Jagow, G.2
-
32
-
-
0023801174
-
Coomassie blue-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for direct visualization of polypeptides during electrophoresis
-
Schagger, H., Aquila, H., and Von Jagow, G. (1988) Coomassie blue-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for direct visualization of polypeptides during electrophoresis. Anal. Biochem. 173, 201-205
-
(1988)
Anal. Biochem
, vol.173
, pp. 201-205
-
-
Schagger, H.1
Aquila, H.2
Von Jagow, G.3
-
33
-
-
0023931883
-
Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G-250 and R-250
-
Neuhoff, V., Arold, N., Taube, D., and Ehrhardt, W. (1988) Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G-250 and R-250. Electrophoresis 9, 255-262
-
(1988)
Electrophoresis
, vol.9
, pp. 255-262
-
-
Neuhoff, V.1
Arold, N.2
Taube, D.3
Ehrhardt, W.4
-
34
-
-
0036007922
-
Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction
-
Peltier, J. B., Emanuelsson, O., Kalume, D. E., Ytterberg, J., Friso, G., Rudella, A., Liberles, D. A., Soderberg, L., Roepstorff, P., von Heijne, G., and van Wijk, K. J. (2002) Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. Plant Cell 14, 211-236
-
(2002)
Plant Cell
, vol.14
, pp. 211-236
-
-
Peltier, J.B.1
Emanuelsson, O.2
Kalume, D.E.3
Ytterberg, J.4
Friso, G.5
Rudella, A.6
Liberles, D.A.7
Soderberg, L.8
Roepstorff, P.9
von Heijne, G.10
van Wijk, K.J.11
-
35
-
-
1042279117
-
In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: New proteins, new functions, and a plastid proteome database
-
Friso, G., Giacomelli, L., Ytterberg, A. J., Peltier, J. B., Rudella, A., Sun, Q., and Wijk, K. J. (2004) In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Plant Cell 16, 478-499
-
(2004)
Plant Cell
, vol.16
, pp. 478-499
-
-
Friso, G.1
Giacomelli, L.2
Ytterberg, A.J.3
Peltier, J.B.4
Rudella, A.5
Sun, Q.6
Wijk, K.J.7
-
36
-
-
0345505686
-
Versatility of inner membrane protein biogenesis in Escherichia coli
-
Froderberg, L., Houben, E., Samuelson, J. C., Chen, M. Y., Park, S. K., Phillips, G. J., Dalbey, R., Luirink, J., and de Gier, J. W. L. (2003) Versatility of inner membrane protein biogenesis in Escherichia coli. Mol. Microbiol. 47, 1015-1027
-
(2003)
Mol. Microbiol
, vol.47
, pp. 1015-1027
-
-
Froderberg, L.1
Houben, E.2
Samuelson, J.C.3
Chen, M.Y.4
Park, S.K.5
Phillips, G.J.6
Dalbey, R.7
Luirink, J.8
de Gier, J.W.L.9
-
37
-
-
0035834426
-
SecDFyajC is not required for the maintenance of the proton motive force
-
Nouwen, N., van der Laan, M., and Driessen, A. J. (2001) SecDFyajC is not required for the maintenance of the proton motive force. FEBS Lett. 508, 103-106
-
(2001)
FEBS Lett
, vol.508
, pp. 103-106
-
-
Nouwen, N.1
van der Laan, M.2
Driessen, A.J.3
-
38
-
-
0037947833
-
A conserved function of YidC in the biogenesis of respiratory chain complexes
-
van der Laan, M., Urbanus, M. L., Ten Hagen-Jongman, C. M., Nouwen, N., Oudega, B., Harms, N., Driessen, A. J., and Luirink, J. (2003) A conserved function of YidC in the biogenesis of respiratory chain complexes. Proc. Natl. Acad. Sci. U. S. A. 100, 5801-5806
-
(2003)
Proc. Natl. Acad. Sci. U. S. A
, vol.100
, pp. 5801-5806
-
-
van der Laan, M.1
Urbanus, M.L.2
Ten Hagen-Jongman, C.M.3
Nouwen, N.4
Oudega, B.5
Harms, N.6
Driessen, A.J.7
Luirink, J.8
-
40
-
-
0029670330
-
Improved green fluorescent protein by molecular evolution using DNA shuffling
-
Crameri, A., Whitehom, E. A., Tate, E., and Stemmer, W. P. (1996) Improved green fluorescent protein by molecular evolution using DNA shuffling. Nat. Biotechnol. 14, 315-319
-
(1996)
Nat. Biotechnol
, vol.14
, pp. 315-319
-
-
Crameri, A.1
Whitehom, E.A.2
Tate, E.3
Stemmer, W.P.4
-
41
-
-
0032515148
-
Membrane topology of the 60-kDa Oxa1p homologue from Escherichia coli
-
Saaf, A., Monne, M., de Gier, J. W., and von Heijne, G. (1998) Membrane topology of the 60-kDa Oxa1p homologue from Escherichia coli. J. Biol. Chem. 273, 30415-30418
-
(1998)
J. Biol. Chem
, vol.273
, pp. 30415-30418
-
-
Saaf, A.1
Monne, M.2
de Gier, J.W.3
von Heijne, G.4
-
42
-
-
0037022611
-
Rapid topology mapping of Escherichia coli inner-membrane proteins by prediction and PhoA/GFP fusion analysis
-
Drew, D., Sjöstrand, D., Nilsson, J., Urbig, T., Chin, C. N., de Gier, J. W., and von Heijne, G. (2002) Rapid topology mapping of Escherichia coli inner-membrane proteins by prediction and PhoA/GFP fusion analysis. Proc. Natl. Acad. Sci. U. S. A. 99, 2690 -2695
-
(2002)
Proc. Natl. Acad. Sci. U. S. A
, vol.99
, pp. 2690-2695
-
-
Drew, D.1
Sjöstrand, D.2
Nilsson, J.3
Urbig, T.4
Chin, C.N.5
de Gier, J.W.6
von Heijne, G.7
-
43
-
-
0024442722
-
Control of topology and mode of assembly of a polytopic membrane protein by positively charged residues
-
von Heijne, G. (1989) Control of topology and mode of assembly of a polytopic membrane protein by positively charged residues. Nature 341, 456-458
-
(1989)
Nature
, vol.341
, pp. 456-458
-
-
von Heijne, G.1
-
44
-
-
1542676909
-
Defining the regions of Escherichia coli YidC that contribute to activity
-
Jiang, F., Chen, M., Yi, L., de Gier, J. W., Kuhn, A., and Dalbey, R. E. (2003) Defining the regions of Escherichia coli YidC that contribute to activity. J. Biol. Chem. 278, 48965-48972
-
(2003)
J. Biol. Chem
, vol.278
, pp. 48965-48972
-
-
Jiang, F.1
Chen, M.2
Yi, L.3
de Gier, J.W.4
Kuhn, A.5
Dalbey, R.E.6
-
45
-
-
1842506046
-
Control of SecA and SecM translation by protein secretion
-
Nakatogawa, H., Muralkami, A., and Ito, K. (2004) Control of SecA and SecM translation by protein secretion. Curr. Opin. Microbiol. 7, 145-150
-
(2004)
Curr. Opin. Microbiol
, vol.7
, pp. 145-150
-
-
Nakatogawa, H.1
Muralkami, A.2
Ito, K.3
-
46
-
-
0142125283
-
Small heat shock proteins, ClpB and the DnaK system form a functional triad in reversing protein aggregation
-
Mogk, A., Deuerling, E., Vorderwulbecke, S., Vierling, E., and Bukau, B. (2003) Small heat shock proteins, ClpB and the DnaK system form a functional triad in reversing protein aggregation. Mol. Microbiol. 50, 585-595
-
(2003)
Mol. Microbiol
, vol.50
, pp. 585-595
-
-
Mogk, A.1
Deuerling, E.2
Vorderwulbecke, S.3
Vierling, E.4
Bukau, B.5
-
47
-
-
0037890192
-
The heat shock response of Escherichia coli
-
Arsene, F., Tomoyasu, T., and Bukau, B. (2000) The heat shock response of Escherichia coli. Int. J. Food Microbiol. 55, 3-9
-
(2000)
Int. J. Food Microbiol
, vol.55
, pp. 3-9
-
-
Arsene, F.1
Tomoyasu, T.2
Bukau, B.3
-
48
-
-
0024709959
-
Induction of a heat shock-like response by unfolded protein in Escherichia coli: Dependence on protein level not protein degradation
-
Parsell, D. A., and Sauer, R. T. (1989) Induction of a heat shock-like response by unfolded protein in Escherichia coli: dependence on protein level not protein degradation. Genes Dev. 3, 1226-1232
-
(1989)
Genes Dev
, vol.3
, pp. 1226-1232
-
-
Parsell, D.A.1
Sauer, R.T.2
-
49
-
-
2942755215
-
Stress induced by recombinant protein production in Escherichia coli
-
Hoffmann, F., and Rinas, U. (2004) Stress induced by recombinant protein production in Escherichia coli. Adv. Biochem. Eng. Biotechnol. 89, 73-92
-
(2004)
Adv. Biochem. Eng. Biotechnol
, vol.89
, pp. 73-92
-
-
Hoffmann, F.1
Rinas, U.2
-
50
-
-
0022344755
-
Production of abnormal proteins in E. coli stimulates transcription of Ion and other heat shock genes
-
Goff, S. A., and Goldberg, A. L. (1985) Production of abnormal proteins in E. coli stimulates transcription of Ion and other heat shock genes. Cell 41, 587-595
-
(1985)
Cell
, vol.41
, pp. 587-595
-
-
Goff, S.A.1
Goldberg, A.L.2
-
51
-
-
33745618956
-
Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress
-
Nonaka, G., Blankschien, M., Herman, C., Gross, C. A., and Rhodius, V. A. (2006) Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress. Genes Dev. 20, 1776-1789
-
(2006)
Genes Dev
, vol.20
, pp. 1776-1789
-
-
Nonaka, G.1
Blankschien, M.2
Herman, C.3
Gross, C.A.4
Rhodius, V.A.5
-
52
-
-
26644440190
-
Proteomic profiling of Escherichia coli proteins under high cell density fed-batch cultivation with overexpression of phosphogluconolactonase
-
Wang, Y., Wu, S. L., Hancock, W. S., Trala, R., Kessler, M., Taylor, A. H., Patel, P. S., and Aon, J. C. (2005) Proteomic profiling of Escherichia coli proteins under high cell density fed-batch cultivation with overexpression of phosphogluconolactonase. Biotechnol. Prog. 21, 1401-1411
-
(2005)
Biotechnol. Prog
, vol.21
, pp. 1401-1411
-
-
Wang, Y.1
Wu, S.L.2
Hancock, W.S.3
Trala, R.4
Kessler, M.5
Taylor, A.H.6
Patel, P.S.7
Aon, J.C.8
-
53
-
-
9244251544
-
Structural similarity of YbeD protein from Escherichia coli to allosteric regulatory domains
-
Kozlov, G., Elias, D., Semesi, A., Yee, A., Cygler, M., and Gehring, K. (2004) Structural similarity of YbeD protein from Escherichia coli to allosteric regulatory domains. J. Bacteriol. 186, 8083-8088
-
(2004)
J. Bacteriol
, vol.186
, pp. 8083-8088
-
-
Kozlov, G.1
Elias, D.2
Semesi, A.3
Yee, A.4
Cygler, M.5
Gehring, K.6
-
54
-
-
13444301472
-
PSORTdb: A protein subcellular localization database for bacteria
-
Rey, S., Acab, M., Gardy, J. L., Laird, M. R., deFays, K., Lambert, C., and Brinkman, F. S. (2005) PSORTdb: a protein subcellular localization database for bacteria. Nucleic Acids Res. 33, D164-D168
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Rey, S.1
Acab, M.2
Gardy, J.L.3
Laird, M.R.4
deFays, K.5
Lambert, C.6
Brinkman, F.S.7
-
55
-
-
0033573135
-
Identification of thermolabile Escherichia coli proteins: Prevention and reversion of aggregation by DnaK and ClpB
-
Mogk, A., Tomoyasu, T., Goloubinoff, P., Rudiger, S., Roder, D., Langen, H., and Bukau, B. (1999) Identification of thermolabile Escherichia coli proteins: prevention and reversion of aggregation by DnaK and ClpB. EMBO J. 18, 6934-6949
-
(1999)
EMBO J
, vol.18
, pp. 6934-6949
-
-
Mogk, A.1
Tomoyasu, T.2
Goloubinoff, P.3
Rudiger, S.4
Roder, D.5
Langen, H.6
Bukau, B.7
-
56
-
-
22744447508
-
Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli
-
Kerner, M. J., Naylor, D. J., Ishihama, Y., Maier, T., Chang, H. C., Stines, A. P., Georgopoulos, C., Frishman, D., Hayer-Harti, M., Mann, M., and Harti, F. U. (2005) Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli. Cell 122, 209-220
-
(2005)
Cell
, vol.122
, pp. 209-220
-
-
Kerner, M.J.1
Naylor, D.J.2
Ishihama, Y.3
Maier, T.4
Chang, H.C.5
Stines, A.P.6
Georgopoulos, C.7
Frishman, D.8
Hayer-Harti, M.9
Mann, M.10
Harti, F.U.11
-
57
-
-
27144431766
-
Protein complexes of the Escherichia coli cell envelope
-
Stenberg, F., Chovanec, P., Maslen, S. L., Robinson, C. V., Ilag, L. L., von Heijne, G., and Daley, D. O. (2005) Protein complexes of the Escherichia coli cell envelope. J. Biol. Chem. 280, 34409-34419
-
(2005)
J. Biol. Chem
, vol.280
, pp. 34409-34419
-
-
Stenberg, F.1
Chovanec, P.2
Maslen, S.L.3
Robinson, C.V.4
Ilag, L.L.5
von Heijne, G.6
Daley, D.O.7
-
58
-
-
33748346853
-
A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis
-
Lasserre, J. P., Beyne, E., Pyndiah, S., Lapaillerie, D., Claverol, S., and Bonneu, M. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27, 3306-3321
-
(2006)
Electrophoresis
, vol.27
, pp. 3306-3321
-
-
Lasserre, J.P.1
Beyne, E.2
Pyndiah, S.3
Lapaillerie, D.4
Claverol, S.5
Bonneu, M.6
-
59
-
-
0035105116
-
Secretion monitor, SecM, undergoes self-translation arrest in the cytosol
-
Nakatogawa, H., and Ito, K. (2001) Secretion monitor, SecM, undergoes self-translation arrest in the cytosol. Mol. Cell 7, 185-192
-
(2001)
Mol. Cell
, vol.7
, pp. 185-192
-
-
Nakatogawa, H.1
Ito, K.2
-
60
-
-
0037040411
-
The ribosomal exit tunnel functions as a discriminating gate
-
Nakatogawa, H., and Ito, K. (2002) The ribosomal exit tunnel functions as a discriminating gate. Cell 108, 629-636
-
(2002)
Cell
, vol.108
, pp. 629-636
-
-
Nakatogawa, H.1
Ito, K.2
-
61
-
-
0026558591
-
Association of the halobacterial 7S RNA to the polysome correlates with expression of the membrane protein bacterioopsin
-
Gropp, R., Gropp, F., and Betlach, M. C. (1992) Association of the halobacterial 7S RNA to the polysome correlates with expression of the membrane protein bacterioopsin. Proc. Natl. Acad. Sci. U. S. A. 89, 1204-1208
-
(1992)
Proc. Natl. Acad. Sci. U. S. A
, vol.89
, pp. 1204-1208
-
-
Gropp, R.1
Gropp, F.2
Betlach, M.C.3
-
62
-
-
33749238059
-
Quantitative profiling of the membrane proteome in a halophilic archaeon
-
Bisle, B., Schmidt, A., Scheibe, B., Klein, C., Tebbe, A., Kellermann, J., Siedler, F., Pfeiffer, F., Lottspeich, F., and Oesterhelt, D. (2006) Quantitative profiling of the membrane proteome in a halophilic archaeon. Mol. Cell. Proteomics 5, 1543-1558
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 1543-1558
-
-
Bisle, B.1
Schmidt, A.2
Scheibe, B.3
Klein, C.4
Tebbe, A.5
Kellermann, J.6
Siedler, F.7
Pfeiffer, F.8
Lottspeich, F.9
Oesterhelt, D.10
-
63
-
-
15744389448
-
Sensing external stress: Watchdogs of the Escherichia coli cell envelope
-
Ruiz, N., and Silhavy, T. J. (2005) Sensing external stress: watchdogs of the Escherichia coli cell envelope. Curr. Opin. Microbiol. 8, 122-126
-
(2005)
Curr. Opin. Microbiol
, vol.8
, pp. 122-126
-
-
Ruiz, N.1
Silhavy, T.J.2
-
64
-
-
33646851752
-
Pushing the envelope: Extracytoplasmic stress responses in bacterial pathogens
-
Rowley, G., Spector, M., Kormanec, J., and Roberts, M. (2006) Pushing the envelope: extracytoplasmic stress responses in bacterial pathogens. Nat. Rev. Microbiol. 4, 383-394
-
(2006)
Nat. Rev. Microbiol
, vol.4
, pp. 383-394
-
-
Rowley, G.1
Spector, M.2
Kormanec, J.3
Roberts, M.4
-
65
-
-
0030593468
-
Over-production of proteins in Escherichia coli: Mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels
-
Miroux, B., and Walker, J. E. (1996) Over-production of proteins in Escherichia coli: Mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels. J. Mol. Biol. 260, 289-298
-
(1996)
J. Mol. Biol
, vol.260
, pp. 289-298
-
-
Miroux, B.1
Walker, J.E.2
-
66
-
-
5044235541
-
Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins
-
Fernandez-Escamilla, A. M., Rousseau, F., Schymkowitz, J., and Serrano, L. (2004) Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins. Nat. Biotechnol. 22, 1302-1306
-
(2004)
Nat. Biotechnol
, vol.22
, pp. 1302-1306
-
-
Fernandez-Escamilla, A.M.1
Rousseau, F.2
Schymkowitz, J.3
Serrano, L.4
-
67
-
-
18244398660
-
Localization of chaperones DnaK and GroEL in bacterial inclusion bodies
-
Carrio, M. M., and Villaverde, A. (2005) Localization of chaperones DnaK and GroEL in bacterial inclusion bodies. J. Bacteriol. 187, 3599-3601
-
(2005)
J. Bacteriol
, vol.187
, pp. 3599-3601
-
-
Carrio, M.M.1
Villaverde, A.2
-
68
-
-
0037468523
-
Role of molecular chaperones in inclusion body formation
-
Carrio, M. M., and Villaverde, A. (2003) Role of molecular chaperones in inclusion body formation. FEBS Lett. 537, 215-221
-
(2003)
FEBS Lett
, vol.537
, pp. 215-221
-
-
Carrio, M.M.1
Villaverde, A.2
-
69
-
-
8844251486
-
Thermotolerance requires refolding of aggregated proteins by substrate translocation through the central pore of ClpB
-
Weibezahn, J., Tessarz, P., Schlieker, C., Zahn, R., Maglica, Z., Lee, S., Zentgraf, H., Weber-Ban, E. U., Dougan, D. A., Tsai, F. T., Mogk, A., and Bukau, B. (2004) Thermotolerance requires refolding of aggregated proteins by substrate translocation through the central pore of ClpB. Cell 119, 653-665
-
(2004)
Cell
, vol.119
, pp. 653-665
-
-
Weibezahn, J.1
Tessarz, P.2
Schlieker, C.3
Zahn, R.4
Maglica, Z.5
Lee, S.6
Zentgraf, H.7
Weber-Ban, E.U.8
Dougan, D.A.9
Tsai, F.T.10
Mogk, A.11
Bukau, B.12
-
70
-
-
31544450286
-
-
Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., Datsenko, K. A., Tomita, M., Wanner, B. L., and Mori, H. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2, 2006.0008
-
Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., Datsenko, K. A., Tomita, M., Wanner, B. L., and Mori, H. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2, 2006.0008
-
-
-
-
71
-
-
0242523959
-
A salvage pathway for protein structures: TmRNA and trans-translation
-
Withey, J. H., and Friedman, D. I. (2003) A salvage pathway for protein structures: tmRNA and trans-translation. Annu. Rev. Microbiol. 57, 101-123
-
(2003)
Annu. Rev. Microbiol
, vol.57
, pp. 101-123
-
-
Withey, J.H.1
Friedman, D.I.2
-
73
-
-
1842529555
-
Probing the ArcA-P modulon of Escherichia coil by whole genome transcriptional analysis and sequence recognition profiling
-
Liu, X., and De Wulf, P. (2004) Probing the ArcA-P modulon of Escherichia coil by whole genome transcriptional analysis and sequence recognition profiling. J. Biol. Chem. 279, 12588-12597
-
(2004)
J. Biol. Chem
, vol.279
, pp. 12588-12597
-
-
Liu, X.1
De Wulf, P.2
-
74
-
-
0030928663
-
SpoVM, a small protein essential to development in Bacillus subtilis, interacts with the ATP-dependent protease FtsH
-
Cutting, S., Anderson, M., Lysenko, E., Page, A., Tomoyasu, T., Tatematsu, K., Tatsuta, T., Kroos, L., and Ogura, T. (1997) SpoVM, a small protein essential to development in Bacillus subtilis, interacts with the ATP-dependent protease FtsH. J. Bacteriol. 179, 5534-5542
-
(1997)
J. Bacteriol
, vol.179
, pp. 5534-5542
-
-
Cutting, S.1
Anderson, M.2
Lysenko, E.3
Page, A.4
Tomoyasu, T.5
Tatematsu, K.6
Tatsuta, T.7
Kroos, L.8
Ogura, T.9
-
75
-
-
17444381980
-
Identification of a multicomponent complex required for outer membrane biogenesis in Escherichia coli
-
Wu, T., Malinverni, J., Ruiz, N., Kim, S., Silhavy, T. J., and Kahne, D. (2005) Identification of a multicomponent complex required for outer membrane biogenesis in Escherichia coli. Cell 121, 235-245
-
(2005)
Cell
, vol.121
, pp. 235-245
-
-
Wu, T.1
Malinverni, J.2
Ruiz, N.3
Kim, S.4
Silhavy, T.J.5
Kahne, D.6
-
76
-
-
0033617146
-
A temperature-dependent switch from chaperone to protease in a widely conserved heat shock protein
-
Spiess, C., Beil, A., and Ehrmann, M. (1999) A temperature-dependent switch from chaperone to protease in a widely conserved heat shock protein. Cell 97, 339-347
-
(1999)
Cell
, vol.97
, pp. 339-347
-
-
Spiess, C.1
Beil, A.2
Ehrmann, M.3
-
77
-
-
0025933503
-
Expert system for predicting localization sites in Gram-negative bacteria
-
Nakai, K., and Kanehisa, M. (1991) Expert system for predicting localization sites in Gram-negative bacteria. Proteins: Struct. Funct. Genet. 11, 95-110
-
(1991)
Proteins: Struct. Funct. Genet
, vol.11
, pp. 95-110
-
-
Nakai, K.1
Kanehisa, M.2
|