-
1
-
-
0343627965
-
SsrA-mediated tagging and proteolysis of LacI and its role in the regulation of lac operon
-
Abo T, Inada T, Ogawa K, Aiba H. 2000. SsrA-mediated tagging and proteolysis of LacI and its role in the regulation of lac operon. EMBO J. 19:3762-69
-
(2000)
EMBO J.
, vol.19
, pp. 3762-3769
-
-
Abo, T.1
Inada, T.2
Ogawa, K.3
Aiba, H.4
-
2
-
-
0035985042
-
SsrA-mediated protein tagging in the presence of miscoding drugs and its physiological role in Escherichia coli
-
Abo T, Ueda K, Sunohara T, Ogawa K, Aiba H. 2002. SsrA-mediated protein tagging in the presence of miscoding drugs and its physiological role in Escherichia coli. Genes Cells 7:629-38
-
(2002)
Genes Cells
, vol.7
, pp. 629-638
-
-
Abo, T.1
Ueda, K.2
Sunohara, T.3
Ogawa, K.4
Aiba, H.5
-
3
-
-
0031746834
-
New unstable variants of green flourescent protein for studies of transient gene expression in bacteria
-
Andersen JB, Sternberg C, Poulsen LK, Bjorn SP, Givskov M, Molin S. 1998. New unstable variants of green flourescent protein for studies of transient gene expression in bacteria. Appl. Environ. Microbiol. 64:2240-46
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 2240-2246
-
-
Andersen, J.B.1
Sternberg, C.2
Poulsen, L.K.3
Bjorn, S.P.4
Givskov, M.5
Molin, S.6
-
4
-
-
0029824009
-
10Sa RNA complements the temperature-sensitive phenotype caused by a mutation in the phosphoribosyl pyrophosphate synthetase (prs) gene in Escherichia coli
-
Ando H, Kitabatake M, Inokuchi H. 1996. 10Sa RNA complements the temperature-sensitive phenotype caused by a mutation in the phosphoribosyl pyrophosphate synthetase (prs) gene in Escherichia coli. Genes Genet. Syst. 71:47-50
-
(1996)
Genes Genet. Syst.
, vol.71
, pp. 47-50
-
-
Ando, H.1
Kitabatake, M.2
Inokuchi, H.3
-
5
-
-
0027551469
-
RNA processing in prokaryotic cells
-
Apirion D, Miczak A. 1993. RNA processing in prokaryotic cells. Bioessays 15:113-20
-
(1993)
Bioessays
, vol.15
, pp. 113-120
-
-
Apirion, D.1
Miczak, A.2
-
6
-
-
0030026177
-
A case for trans translation
-
Atkins JF, Gesteland RF. 1996. A case for trans translation. Nature 379:769-71
-
(1996)
Nature
, vol.379
, pp. 769-771
-
-
Atkins, J.F.1
Gesteland, R.F.2
-
7
-
-
0037029081
-
Functional evidence for D- and T-loop interactions in tmRNA
-
Barends S, Bjork K, Gultyaev AP, de Smit MH, Pleij CW, Kraal B. 2002. Functional evidence for D-and T-loop interactions in tmRNA. FEBS Lett. 514:78-83
-
(2002)
FEBS Lett.
, vol.514
, pp. 78-83
-
-
Barends, S.1
Bjork, K.2
Gultyaev, A.P.3
De Smit, M.H.4
Pleij, C.W.5
Kraal, B.6
-
8
-
-
0034646235
-
Kinetic parameters for tmRNA binding to alanyl-tRNA synthetase and elongation factor Tu from Escherichia coli
-
Barends S, Wower J, Kraal B. 2000. Kinetic parameters for tmRNA binding to alanyl-tRNA synthetase and elongation factor Tu from Escherichia coli. Biochemistry 39:2652-58
-
(2000)
Biochemistry
, vol.39
, pp. 2652-2658
-
-
Barends, S.1
Wower, J.2
Kraal, B.3
-
10
-
-
0032539906
-
RNA components of Escherichia coli degradosome: Evidence for rRNA decay
-
Bessarab DA, Kaberdin VR, Wei CL, Liou GG, Lin-Chao S. 1998. RNA components of Escherichia coli degradosome: evidence for rRNA decay. Proc. Natl. Acad. Sci. USA 95:3157-61
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 3157-3161
-
-
Bessarab, D.A.1
Kaberdin, V.R.2
Wei, C.L.3
Liou, G.G.4
Lin-Chao, S.5
-
11
-
-
0036703022
-
Ribosomal protein S1 induces a conformational change of tmRNA; more than one protein S1 per molecule of tmRNA
-
Bordeau V, Felden B. 2002. Ribosomal protein S1 induces a conformational change of tmRNA; more than one protein S1 per molecule of tmRNA. Biochimie 84:723-29
-
(2002)
Biochimie
, vol.84
, pp. 723-729
-
-
Bordeau, V.1
Felden, B.2
-
12
-
-
0036549769
-
The Escherichia coli RNA degradosome: Structure, function and relationship in other ribonucleolytic multienzyme complexes
-
Carpousis AJ. 2002. The Escherichia coli RNA degradosome: structure, function and relationship in other ribonucleolytic multienzyme complexes. Biochem. Soc. Trans. 30:150-55
-
(2002)
Biochem. Soc. Trans.
, vol.30
, pp. 150-155
-
-
Carpousis, A.J.1
-
13
-
-
0024398325
-
The gene for a small stable RNA (10Sa RNA) of Escherichia coli
-
Chauhan AK, Apirion D. 1989. The gene for a small stable RNA (10Sa RNA) of Escherichia coli. Mol. Microbiol. 3:1481-85
-
(1989)
Mol. Microbiol.
, vol.3
, pp. 1481-1485
-
-
Chauhan, A.K.1
Apirion, D.2
-
14
-
-
0037077311
-
Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II
-
Cheng ZF, Deutscher MP. 2002. Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II. J. Biol. Chem. 277:21624-29
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 21624-21629
-
-
Cheng, Z.F.1
Deutscher, M.P.2
-
15
-
-
0036364355
-
Competition between SsrA tagging and translational termination at weak stop codons in Escherichia coli
-
Collier J, Binet E, Bouloc P. 2002. Competition between SsrA tagging and translational termination at weak stop codons in Escherichia coli. Mol. Microbiol. 45:745-54
-
(2002)
Mol. Microbiol.
, vol.45
, pp. 745-754
-
-
Collier, J.1
Binet, E.2
Bouloc, P.3
-
16
-
-
0242711838
-
-
Deleted in proof
-
Deleted in proof
-
-
-
-
17
-
-
0035674317
-
Increased sensitivity to protein synthesis inhibitors in cells lacking tmRNA
-
de la Cruz J, Vioque A. 2001. Increased sensitivity to protein synthesis inhibitors in cells lacking tmRNA. Rna 7:1708-16
-
(2001)
Rna
, vol.7
, pp. 1708-1716
-
-
De La Cruz, J.1
Vioque, A.2
-
18
-
-
0037007224
-
Structure of small protein B: The protein component of the tmRNA-SmpB system for ribosome rescue
-
Dong G, Nowakowski J, Hoffman DW. 2002. Structure of small protein B: the protein component of the tmRNA-SmpB system for ribosome rescue. EMBO J. 21:1845-54
-
(2002)
EMBO J.
, vol.21
, pp. 1845-1854
-
-
Dong, G.1
Nowakowski, J.2
Hoffman, D.W.3
-
19
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Elowitz MB, Leibler S. 2000. A synthetic oscillatory network of transcriptional regulators. Nature 403:335-38
-
(2000)
Nature
, vol.403
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
20
-
-
0032101712
-
Presence and location of modified nucleotides in Escherichia coli tmRNA: Structural mimicry with tRNA acceptor branches
-
Felden B, Hanawa K, Atkins JF, Himeno H, Muto A, et al. 1998. Presence and location of modified nucleotides in Escherichia coli tmRNA: structural mimicry with tRNA acceptor branches. EMBO J. 17:3188-96
-
(1998)
EMBO J.
, vol.17
, pp. 3188-3196
-
-
Felden, B.1
Hanawa, K.2
Atkins, J.F.3
Himeno, H.4
Muto, A.5
-
21
-
-
0030436199
-
Structural organization of Escherichia coli tmRNA
-
Felden B, Himeno H, Muto A, Atkins JF, Gesteland RF. 1996. Structural organization of Escherichia coli tmRNA. Biochimie 78:979-83
-
(1996)
Biochimie
, vol.78
, pp. 979-983
-
-
Felden, B.1
Himeno, H.2
Muto, A.3
Atkins, J.F.4
Gesteland, R.F.5
-
22
-
-
0031014984
-
Probing the structure of the Escherichia coli 10Sa RNA (tmRNA)
-
Felden B, Himeno H, Muto A, McCutcheon JP, Atkins JF, Gesteland RF. 1997. Probing the structure of the Escherichia coli 10Sa RNA (tmRNA). Rna 3:89-103
-
(1997)
Rna
, vol.3
, pp. 89-103
-
-
Felden, B.1
Himeno, H.2
Muto, A.3
McCutcheon, J.P.4
Atkins, J.F.5
Gesteland, R.F.6
-
23
-
-
0035845498
-
Overlapping recognition determinants within the ssrA degradation tag allow modulation of proteolysis
-
Flynn JM, Levchenko I, Seidel M, Wickner SH, Sauer RT, Baker TA. 2001. Overlapping recognition determinants within the ssrA degradation tag allow modulation of proteolysis. Proc. Natl. Acad. Sci. USA 98:10584-89
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 10584-10589
-
-
Flynn, J.M.1
Levchenko, I.2
Seidel, M.3
Wickner, S.H.4
Sauer, R.T.5
Baker, T.A.6
-
24
-
-
0242627802
-
-
Deleted in proof
-
Deleted in proof
-
-
-
-
25
-
-
0036210660
-
Detection of tmRNA-mediated trans-translation products in Bacillus subtilis
-
Fujihara A, Tomatsu H, Inagaki S, Tadaki T, Ushida C, et al. 2002. Detection of tmRNA-mediated trans-translation products in Bacillus subtilis. Genes Cells 7:343-50
-
(2002)
Genes Cells
, vol.7
, pp. 343-350
-
-
Fujihara, A.1
Tomatsu, H.2
Inagaki, S.3
Tadaki, T.4
Ushida, C.5
-
27
-
-
0035171382
-
Emerging views on tmRNA-mediated protein tagging and ribosome rescue
-
Gillet R, Felden B. 2001. Emerging views on tmRNA-mediated protein tagging and ribosome rescue. Mol. Microbiol. 42:879-85
-
(2001)
Mol. Microbiol.
, vol.42
, pp. 879-885
-
-
Gillet, R.1
Felden, B.2
-
28
-
-
0035355198
-
Transfer RNA(A1a) recognizes transfer-messenger RNA with specificity; a functional complex prior to entering the ribosome?
-
Gillet R, Felden B. 2001. Transfer RNA(A1a) recognizes transfer-messenger RNA with specificity; a functional complex prior to entering the ribosome? EMBO J. 20:2966-76
-
(2001)
EMBO J.
, vol.20
, pp. 2966-2976
-
-
Gillet, R.1
Felden, B.2
-
29
-
-
0037112006
-
Stealth regulation: Biological circuits with small RNA switches
-
Gottesman S. 2002. Stealth regulation: biological circuits with small RNA switches. Genes Dev. 16:2829-42
-
(2002)
Genes Dev.
, vol.16
, pp. 2829-2842
-
-
Gottesman, S.1
-
30
-
-
0032079329
-
The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system
-
Gottesman S, Roche E, Zhou Y, Sauer RT. 1998. The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system. Genes Dev. 12:1338-47
-
(1998)
Genes Dev.
, vol.12
, pp. 1338-1347
-
-
Gottesman, S.1
Roche, E.2
Zhou, Y.3
Sauer, R.T.4
-
31
-
-
0033368475
-
Messenger RNA stability and its role in control of gene expression in bacteria and phages
-
Grunberg-Manago M. 1999. Messenger RNA stability and its role in control of gene expression in bacteria and phages. Annu. Rev. Genet. 33:193-227
-
(1999)
Annu. Rev. Genet.
, vol.33
, pp. 193-227
-
-
Grunberg-Manago, M.1
-
33
-
-
0035890475
-
Importance of the conserved nucleotides around the tRNA-like structure of Escherichia coli transfer-messenger RNA for protein tagging
-
Hanawa-Suetsugu K, Bordeau V, Himeno H, Muto A, Felden B. 2001. Importance of the conserved nucleotides around the tRNA-like structure of Escherichia coli transfer-messenger RNA for protein tagging. Nucleic Acids Res. 29:4663-73
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 4663-4673
-
-
Hanawa-Suetsugu, K.1
Bordeau, V.2
Himeno, H.3
Muto, A.4
Felden, B.5
-
34
-
-
0037072794
-
Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination
-
Hayes CS, Bose B, Sauer RT. 2002. Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination. J. Biol. Chem. 277:33825-32
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 33825-33832
-
-
Hayes, C.S.1
Bose, B.2
Sauer, R.T.3
-
35
-
-
0037133638
-
Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli
-
Hayes CS, Bose B, Sauer RT. 2002. Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli. Proc. Natl. Acad. Sci. USA 99:3440-45
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 3440-3445
-
-
Hayes, C.S.1
Bose, B.2
Sauer, R.T.3
-
36
-
-
2642666491
-
Degradation of carboxy-terminal-tagged cytoplasmic proteins by the Escherichia coli protease HflB (FtsH)
-
Herman C, Thevenet D, Bouloc P, Walker GC, D'Ari R. 1998. Degradation of carboxy-terminal-tagged cytoplasmic proteins by the Escherichia coli protease HflB (FtsH). Genes Dev. 12:1348-55
-
(1998)
Genes Dev.
, vol.12
, pp. 1348-1355
-
-
Herman, C.1
Thevenet, D.2
Bouloc, P.3
Walker, G.C.4
D'Ari, R.5
-
37
-
-
0032511223
-
A nickel complex cleaves uridine in folded RNA structures: Application to E. coli tmRNA and related engineered molecules
-
Hickerson RP, Watkins-Sims CD, Burrows CJ, Atkins JF, Gesteland RF, Felden B. 1998. A nickel complex cleaves uridine in folded RNA structures: application to E. coli tmRNA and related engineered molecules. J. Mol. Biol. 279:577-87
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 577-587
-
-
Hickerson, R.P.1
Watkins-Sims, C.D.2
Burrows, C.J.3
Atkins, J.F.4
Gesteland, R.F.5
Felden, B.6
-
38
-
-
0031584271
-
In vitro trans translation mediated by alanine-charged 10Sa RNA
-
Himeno H, Sato M, Tadaki T, Fukushima M, Ushida C, Muto A. 1997. In vitro trans translation mediated by alanine-charged 10Sa RNA. J. Mol. Biol. 268:803-8
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 803-808
-
-
Himeno, H.1
Sato, M.2
Tadaki, T.3
Fukushima, M.4
Ushida, C.5
Muto, A.6
-
39
-
-
0034161440
-
Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability
-
Huang C, Wolfgang MC, Withey J, Koomey M, Friedman DI. 2000. Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability. EMBO J. 19:1098-107
-
(2000)
EMBO J.
, vol.19
, pp. 1098-1107
-
-
Huang, C.1
Wolfgang, M.C.2
Withey, J.3
Koomey, M.4
Friedman, D.I.5
-
40
-
-
0037051891
-
Trans-translation mediated by Bacillus subtilis tmRNA
-
Ito K, Tadaki T, Lee S, Takada K, Muto A, Himeno H. 2002. Trans-translation mediated by Bacillus subtilis tmRNA. FEBS Lett. 516:245-52
-
(2002)
FEBS Lett.
, vol.516
, pp. 245-252
-
-
Ito, K.1
Tadaki, T.2
Lee, S.3
Takada, K.4
Muto, A.5
Himeno, H.6
-
41
-
-
0037029139
-
How does tmRNA move through the ribosome?
-
Ivanov PV, Zvereva MI, Shpanchenko OV, Dontsova OA, Bogdanov AA, et al. 2002. How does tmRNA move through the ribosome? FEBS Lett. 514:55-59
-
(2002)
FEBS Lett.
, vol.514
, pp. 55-59
-
-
Ivanov, P.V.1
Zvereva, M.I.2
Shpanchenko, O.V.3
Dontsova, O.A.4
Bogdanov, A.A.5
-
43
-
-
0034056347
-
ssra (tmRNA) plays a role in Salmonella enterica serovar Typhimurium pathogenesis
-
Julio SM, Heithoff DM, Mahan MJ. 2000. ssrA (tmRNA) plays a role in Salmonella enterica serovar Typhimurium pathogenesis. J. Bacteriol. 182:1558-63
-
(2000)
J. Bacteriol.
, vol.182
, pp. 1558-1563
-
-
Julio, S.M.1
Heithoff, D.M.2
Mahan, M.J.3
-
44
-
-
0034046020
-
The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue
-
Karzai AW, Roche ED, Sauer RT. 2000. The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue. Nat. Struct. Biol. 7:449-55
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 449-455
-
-
Karzai, A.W.1
Roche, E.D.2
Sauer, R.T.3
-
45
-
-
0035853072
-
Protein factors associated with the SsrA. SmpB tagging and ribosome rescue complex
-
Karzai AW, Sauer RT. 2001. Protein factors associated with the SsrA. SmpB tagging and ribosome rescue complex. Proc. Natl. Acad. Sci. USA 98:3040-44
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 3040-3044
-
-
Karzai, A.W.1
Sauer, R.T.2
-
46
-
-
0345465673
-
SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of Ssra (tmRNA)
-
Karzai AW, Susskind MM, Sauer RT. 1999. SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA). EMBO J. 18:3793-99
-
(1999)
EMBO J.
, vol.18
, pp. 3793-3799
-
-
Karzai, A.W.1
Susskind, M.M.2
Sauer, R.T.3
-
47
-
-
0034608854
-
tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter
-
Keiler KC, Shapiro L, Williams KP. 2000. tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter. Proc. Natl. Acad. Sci. USA 97:7778-83
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 7778-7783
-
-
Keiler, K.C.1
Shapiro, L.2
Williams, K.P.3
-
48
-
-
0030024281
-
Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
-
Keiler KC, Waller PR, Sauer RT. 1996. Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science 271:990-93
-
(1996)
Science
, vol.271
, pp. 990-993
-
-
Keiler, K.C.1
Waller, P.R.2
Sauer, R.T.3
-
49
-
-
0028266653
-
Excision of a P4-like cryptic prophage leads to A1p protease expression in Escherichia coli
-
Kirby JE, Trempy JE, Gottesman S. 1994. Excision of a P4-like cryptic prophage leads to A1p protease expression in Escherichia coli. J. Bacteriol. 176:2068-81
-
(1994)
J. Bacteriol.
, vol.176
, pp. 2068-2081
-
-
Kirby, J.E.1
Trempy, J.E.2
Gottesman, S.3
-
52
-
-
0029987860
-
10Sa RNA is associated with 70S ribosome particles in Escherichia coli
-
Komine Y, Kitabatake M, Inokuchi H. 1996. 10Sa RNA is associated with 70S ribosome particles in Escherichia coli. J. Biochem. (Tokyo) 119:463-67
-
(1996)
J. Biochem. (Tokyo)
, vol.119
, pp. 463-467
-
-
Komine, Y.1
Kitabatake, M.2
Inokuchi, H.3
-
53
-
-
0028124122
-
A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli
-
Komine Y, Kitabatake M, Yokogawa T, Nishikawa K, Inokuchi H. 1994. A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli. Proc. Natl. Acad. Sci. USA 91:9223-27
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 9223-9227
-
-
Komine, Y.1
Kitabatake, M.2
Yokogawa, T.3
Nishikawa, K.4
Inokuchi, H.5
-
54
-
-
0034951396
-
Determinants on tmRNA for initiating efficient and precise transtranslation: Some mutations upstream of the tag-encoding sequence of Escherichia coli tmRNA shift the initiation point of trans-translation in vitro
-
Lee S, Ishii M, Tadaki T, Muto A, Himeno H. 2001. Determinants on tmRNA for initiating efficient and precise transtranslation: Some mutations upstream of the tag-encoding sequence of Escherichia coli tmRNA shift the initiation point of trans-translation in vitro. Rna 7:999-1012
-
(2001)
Rna
, vol.7
, pp. 999-1012
-
-
Lee, S.1
Ishii, M.2
Tadaki, T.3
Muto, A.4
Himeno, H.5
-
55
-
-
0017843404
-
Small stable RNAs from Escherichia coli: Evidence for the existence of new molecules and for a new ribonucleoprotein particle containing 6S RNA
-
Lee SY, Bailey SC, Apirion D. 1978. Small stable RNAs from Escherichia coli: evidence for the existence of new molecules and for a new ribonucleoprotein particle containing 6S RNA. J. Bacteriol. 133:1015-23
-
(1978)
J. Bacteriol.
, vol.133
, pp. 1015-1023
-
-
Lee, S.Y.1
Bailey, S.C.2
Apirion, D.3
-
56
-
-
0034730496
-
A specificity-enhancing factor for the ClpXP degradation machine
-
Levchenko I, Seidel M, Sauer RT, Baker TA. 2000. A specificity-enhancing factor for the ClpXP degradation machine. Science 289:2354-56
-
(2000)
Science
, vol.289
, pp. 2354-2356
-
-
Levchenko, I.1
Seidel, M.2
Sauer, R.T.3
Baker, T.A.4
-
57
-
-
0036210631
-
RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors
-
Li Z, Deutscher MP. 2002. RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors. Rna 8:97-109
-
(2002)
Rna
, vol.8
, pp. 97-109
-
-
Li, Z.1
Deutscher, M.P.2
-
58
-
-
0032539857
-
3′ Exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli
-
Li Z, Pandit S, Deutscher MP. 1998. 3′ Exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli. Proc. Natl. Acad. Sci. USA 95:2856-61
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 2856-2861
-
-
Li, Z.1
Pandit, S.2
Deutscher, M.P.3
-
59
-
-
0033607239
-
RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity
-
Lin-Chao S, Wei CL, Lin YT. 1999. RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity. Proc. Natl. Acad. Sci. USA 96:12406-11
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 12406-12411
-
-
Lin-Chao, S.1
Wei, C.L.2
Lin, Y.T.3
-
60
-
-
0027208795
-
Mechanisms of genome propagation and helper exploitation by satellite phage P4
-
Lindqvist BH, Deho G, Calendar R. 1993. Mechanisms of genome propagation and helper exploitation by satellite phage P4. Microbiol. Rev. 57:683-702
-
(1993)
Microbiol. Rev.
, vol.57
, pp. 683-702
-
-
Lindqvist, B.H.1
Deho, G.2
Calendar, R.3
-
62
-
-
0025812113
-
Two new genes located between 2758 and 2761 kilobase pairs on the Escherichia coli genome
-
Miczak A, Chauhan AK, Apirion D. 1991. Two new genes located between 2758 and 2761 kilobase pairs on the Escherichia coli genome. J. Bacteriol. 173:3271-72
-
(1991)
J. Bacteriol.
, vol.173
, pp. 3271-3272
-
-
Miczak, A.1
Chauhan, A.K.2
Apirion, D.3
-
63
-
-
0031896540
-
Specific binding of Escherichia coli ribosomal protein S1 to BOXA transcriptional antiterminator RNA
-
Mogridge J, Greenblatt J. 1998. Specific binding of Escherichia coli ribosomal protein S1 to BOXA transcriptional antiterminator RNA. J. Bacteriol. 180:2248-52
-
(1998)
J. Bacteriol.
, vol.180
, pp. 2248-2252
-
-
Mogridge, J.1
Greenblatt, J.2
-
64
-
-
0027479161
-
OB(oligonucleotide/oligosaccharide binding)-fold: Common structural and functional solution for non-homologous sequences
-
Murzin AG. 1993. OB(oligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences. EMBO J. 12:861-67
-
(1993)
EMBO J.
, vol.12
, pp. 861-867
-
-
Murzin, A.G.1
-
65
-
-
0033873650
-
Requirement of transfer-messenger RNA for the growth of Bacillus subtilis under stresses
-
Muto A, Fujihara A, Ito KI, Matsuno J, Ushida C, Himeno H. 2000. Requirement of transfer-messenger RNA for the growth of Bacillus subtilis under stresses. Genes Cells 5:627-35
-
(2000)
Genes Cells
, vol.5
, pp. 627-635
-
-
Muto, A.1
Fujihara, A.2
Ito, K.I.3
Matsuno, J.4
Ushida, C.5
Himeno, H.6
-
66
-
-
0031939779
-
A bacterial RNA that functions as both a tRNA and an mRNA
-
Muto A, Ushida C, Himeno H. 1998. A bacterial RNA that functions as both a tRNA and an mRNA. Trends Biochem. Sci. 23:25-29
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 25-29
-
-
Muto, A.1
Ushida, C.2
Himeno, H.3
-
67
-
-
0034893387
-
Temperature-sensitive mutations in various genes of Escherichia coli K12 can be suppressed by the ssrA gene for 10Sa RNA (tmRNA)
-
Nakano H, Goto S, Nakayashiki T, Inokuchi H. 2001. Temperature-sensitive mutations in various genes of Escherichia coli K12 can be suppressed by the ssrA gene for 10Sa RNA (tmRNA). Mol. Genet. Genom. 265:615-21
-
(2001)
Mol. Genet. Genom.
, vol.265
, pp. 615-621
-
-
Nakano, H.1
Goto, S.2
Nakayashiki, T.3
Inokuchi, H.4
-
68
-
-
0033568555
-
An NMR and mutational analysis of an RNA pseudoknot of Escherichia coli tmRNA involved in trans-translation
-
Nameki N, Chattopadhyay P, Himeno H, Muto A, Kawai G. 1999. An NMR and mutational analysis of an RNA pseudoknot of Escherichia coli tmRNA involved in trans-translation. Nucleic Acids Res. 27:3667-75
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3667-3675
-
-
Nameki, N.1
Chattopadhyay, P.2
Himeno, H.3
Muto, A.4
Kawai, G.5
-
69
-
-
0033605218
-
Functional and structural analysis of a pseudoknot upstream of the tag-encoded sequence in E. coli tmRNA
-
Nameki N, Felden B, Atkins JF, Gesteland RF, Himeno H, Muto A. 1999. Functional and structural analysis of a pseudoknot upstream of the tag-encoded sequence in E. coli tmRNA. J. Mol. Biol. 286:733-44
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 733-744
-
-
Nameki, N.1
Felden, B.2
Atkins, J.F.3
Gesteland, R.F.4
Himeno, H.5
Muto, A.6
-
70
-
-
0034737453
-
Three of four pseudoknots in tmRNA are interchangeable and are substitutable with single-stranded RNAs
-
Nameki N, Tadaki T, Himeno H, Muto A. 2000. Three of four pseudoknots in tmRNA are interchangeable and are substitutable with single-stranded RNAs. FEBS Lett. 470:345-49
-
(2000)
FEBS Lett.
, vol.470
, pp. 345-349
-
-
Nameki, N.1
Tadaki, T.2
Himeno, H.3
Muto, A.4
-
71
-
-
0033612218
-
Amino acid acceptor identity switch of Escherichia coli tmRNA from alanine to histidine in vitro
-
Nameki N, Tadaki T, Muto A, Himeno H. 1999. Amino acid acceptor identity switch of Escherichia coli tmRNA from alanine to histidine in vitro. J. Mol. Biol. 289:1-7
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 1-7
-
-
Nameki, N.1
Tadaki, T.2
Muto, A.3
Himeno, H.4
-
72
-
-
0030433926
-
The ternary complex of aminoacylated tRNA and EF-Tu-GTP. Recognition of a bond and a fold
-
Nissen P, Kjeldgaard M, Thirup S, Clark BF, Nyborg J. 1996. The ternary complex of aminoacylated tRNA and EF-Tu-GTP. Recognition of a bond and a fold. Biochimie 78:921-33
-
(1996)
Biochimie
, vol.78
, pp. 921-933
-
-
Nissen, P.1
Kjeldgaard, M.2
Thirup, S.3
Clark, B.F.4
Nyborg, J.5
-
73
-
-
0025800215
-
10Sa RNA, a small stable RNA of Escherichia coli, is functional
-
Oh BK, Apirion D. 1991. 10Sa RNA, a small stable RNA of Escherichia coli, is functional. Mol. Gen. Genet. 229:52-56
-
(1991)
Mol. Gen. Genet.
, vol.229
, pp. 52-56
-
-
Oh, B.K.1
Apirion, D.2
-
74
-
-
0025350539
-
Location of a gene (ssrA) for a small, stable RNA (10Sa RNA) in the Escherichia coli chromosome
-
Oh BK, Chauhan AK, Isono K, Apirion D. 1990. Location of a gene (ssrA) for a small, stable RNA (10Sa RNA) in the Escherichia coli chromosome. J. Bacteriol. 172:4708-9
-
(1990)
J. Bacteriol.
, vol.172
, pp. 4708-4709
-
-
Oh, B.K.1
Chauhan, A.K.2
Isono, K.3
Apirion, D.4
-
75
-
-
0036385946
-
Derepression of bacteriophage mu transposition functions by truncated forms of the immunity repressor
-
O'Handley D, Nakai H. 2002. Derepression of bacteriophage mu transposition functions by truncated forms of the immunity repressor. J. Mol. Biol. 322:311-24
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 311-324
-
-
O'Handley, D.1
Nakai, H.2
-
76
-
-
0020212903
-
Analysis of nutR: A region of phage lambda required for antitermination of transcription
-
Olson ER, Flamm EL, Friedman DI. 1982. Analysis of nutR: a region of phage lambda required for antitermination of transcription. Cell 31:61-70
-
(1982)
Cell
, vol.31
, pp. 61-70
-
-
Olson, E.R.1
Flamm, E.L.2
Friedman, D.I.3
-
77
-
-
0242711832
-
-
Deleted in proof
-
Deleted in proof
-
-
-
-
78
-
-
0036571060
-
Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli
-
Ow MC, Kushner SR. 2002. Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli. Genes Dev. 16:1102-15
-
(2002)
Genes Dev.
, vol.16
, pp. 1102-1115
-
-
Ow, M.C.1
Kushner, S.R.2
-
79
-
-
0035964319
-
The tRNA function of SsrA contributes to controlling repression of bacteriophage Mu prophage
-
Ranquet C, Geiselmann J, Toussaint A. 2001. The tRNA function of SsrA contributes to controlling repression of bacteriophage Mu prophage. Proc. Natl. Acad. Sci. USA 98:10220-25
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 10220-10225
-
-
Ranquet, C.1
Geiselmann, J.2
Toussaint, A.3
-
80
-
-
0028215041
-
Role for 10Sa RNA in the growth of lambda-P22 hybrid phage
-
Retallack DM, Johnson LL, Friedman DI. 1994. Role for 10Sa RNA in the growth of lambda-P22 hybrid phage. J. Bacteriol. 176:2082-89
-
(1994)
J. Bacteriol.
, vol.176
, pp. 2082-2089
-
-
Retallack, D.M.1
Johnson, L.L.2
Friedman, D.I.3
-
81
-
-
0027428845
-
A single-base-pair mutation changes the specificities of both a transcription activation protein and its binding site
-
Retallack DM, Johnson LL, Ziegler SF, Strauch MA, Friedman DI. 1993. A single-base-pair mutation changes the specificities of both a transcription activation protein and its binding site. Proc. Natl. Acad. Sci. USA 90:9562-65
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 9562-9565
-
-
Retallack, D.M.1
Johnson, L.L.2
Ziegler, S.F.3
Strauch, M.A.4
Friedman, D.I.5
-
82
-
-
0242542851
-
-
Deleted in proof
-
Deleted in proof
-
-
-
-
83
-
-
0028923775
-
High-affinity RNA ligands to Escherichia coli ribosomes and ribosomal protein S1: Comparison of natural and unnatural binding sites
-
Ringquist S, Jones T, Snyder EE, Gibson T, Boni I, Gold L. 1995. High-affinity RNA ligands to Escherichia coli ribosomes and ribosomal protein S1: comparison of natural and unnatural binding sites. Biochemistry 34:3640-48
-
(1995)
Biochemistry
, vol.34
, pp. 3640-3648
-
-
Ringquist, S.1
Jones, T.2
Snyder, E.E.3
Gibson, T.4
Boni, I.5
Gold, L.6
-
84
-
-
0015523504
-
Purification and properties of a specific Escherichia coli ribonuclease which cleaves a tyrosine transfer ribonucleic acid precursor
-
Robertson HD, Altman S, Smith JD. 1972. Purification and properties of a specific Escherichia coli ribonuclease which cleaves a tyrosine transfer ribonucleic acid precursor. J. Biol. Chem. 247:5243-51
-
(1972)
J. Biol. Chem.
, vol.247
, pp. 5243-5251
-
-
Robertson, H.D.1
Altman, S.2
Smith, J.D.3
-
85
-
-
0033575660
-
SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity
-
Roche ED, Sauer RT. 1999. SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity. EMBO J. 18: 4579-89
-
(1999)
EMBO J.
, vol.18
, pp. 4579-4589
-
-
Roche, E.D.1
Sauer, R.T.2
-
86
-
-
0035958905
-
Identification of endogenous SsrA-tagged proteins reveals tagging at positions corresponding to stop codons
-
Roche ED, Sauer RT. 2001. Identification of endogenous SsrA-tagged proteins reveals tagging at positions corresponding to stop codons. J. Biol. Chem. 276:28509-15
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 28509-28515
-
-
Roche, E.D.1
Sauer, R.T.2
-
87
-
-
0004024232
-
-
Roe BA, Lin SP, Song L, Yuan X, Clifton S, et al. 1997. Neisseria gonorrhoeae genome sequencing-strain FA1090. http://dna1.chem.ou.edu/gono.html
-
(1997)
Neisseria gonorrhoeae Genome Sequencing-strain FA1090
-
-
Roe, B.A.1
Lin, S.P.2
Song, L.3
Yuan, X.4
Clifton, S.5
-
88
-
-
0032840381
-
Aminoacylated tmRNA from Escherichia coli interacts with prokaryotic elongation factor Tu
-
Rudinger-Thirion J, Giege R, Felden B. 1999. Aminoacylated tmRNA from Escherichia coli interacts with prokaryotic elongation factor Tu. Rna 5:989-92
-
(1999)
Rna
, vol.5
, pp. 989-992
-
-
Rudinger-Thirion, J.1
Giege, R.2
Felden, B.3
-
89
-
-
0037029092
-
The role of SmpB protein in trans-translation
-
Shimizu Y, Ueda T. 2002. The role of SmpB protein in trans-translation. FEBS Lett. 514:74-77
-
(2002)
FEBS Lett.
, vol.514
, pp. 74-77
-
-
Shimizu, Y.1
Ueda, T.2
-
90
-
-
0025649203
-
Maturation of precursor 10Sa RNA in Escherichia coli is a two-step process: The first reaction is catalyzed by RNase III in presence of Mn2+
-
Srivastava RK, Miczak A, Apirion D. 1990. Maturation of precursor 10Sa RNA in Escherichia coli is a two-step process: The first reaction is catalyzed by RNase III in presence of Mn2+. Biochimie 72:791-802
-
(1990)
Biochimie
, vol.72
, pp. 791-802
-
-
Srivastava, R.K.1
Miczak, A.2
Apirion, D.3
-
91
-
-
0242542852
-
-
Deleted in proof
-
Deleted in proof
-
-
-
-
92
-
-
0022476947
-
Identification and characterization of mutations in Escherichia coli that selectively influence the growth of hybrid lambda bacteriophages carrying the immunity region of bacteriophage P22
-
Strauch MA, Baumann M, Friedman DI, Baron LS. 1986. Identification and characterization of mutations in Escherichia coli that selectively influence the growth of hybrid lambda bacteriophages carrying the immunity region of bacteriophage P22. J. Bacteriol. 167:191-200
-
(1986)
J. Bacteriol.
, vol.167
, pp. 191-200
-
-
Strauch, M.A.1
Baumann, M.2
Friedman, D.I.3
Baron, L.S.4
-
93
-
-
0024679573
-
A precursor for a small stable RNA (10Sa RNA) of Escherichia coli
-
Subbarao MN, Apirion D. 1989. A precursor for a small stable RNA (10Sa RNA) of Escherichia coli. Mol. Gen. Genet. 217:499-504
-
(1989)
Mol. Gen. Genet.
, vol.217
, pp. 499-504
-
-
Subbarao, M.N.1
Apirion, D.2
-
94
-
-
0036850399
-
The C-terminal amino acid sequence of nascent peptide is a major determinant of SsrA tagging at all three stop codons
-
Sunohara T, Abo T, Inada T, Aiba H. 2002. The C-terminal amino acid sequence of nascent peptide is a major determinant of SsrA tagging at all three stop codons. Rna 8:1416-27
-
(2002)
Rna
, vol.8
, pp. 1416-1427
-
-
Sunohara, T.1
Abo, T.2
Inada, T.3
Aiba, H.4
-
95
-
-
0030590849
-
Interaction of 10Sa RNA with ribosomes in Escherichia coli
-
Tadaki T, Fukushima M, Ushida C, Himeno H, Muto A. 1996. Interaction of 10Sa RNA with ribosomes in Escherichia coli. FEBS Lett. 399:223-26
-
(1996)
FEBS Lett.
, vol.399
, pp. 223-226
-
-
Tadaki, T.1
Fukushima, M.2
Ushida, C.3
Himeno, H.4
Muto, A.5
-
96
-
-
0036753280
-
The long and short of siRNAs
-
Timmons L. 2002. The long and short of siRNAs. Mol. Cell 10:435-37
-
(2002)
Mol. Cell
, vol.10
, pp. 435-437
-
-
Timmons, L.1
-
97
-
-
0028906813
-
C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide
-
Tu GF, Reid GE, Zhang JG, Moritz RL, Simpson RJ. 1995. C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide. J. Biol. Chem. 270:9322-26
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 9322-9326
-
-
Tu, G.F.1
Reid, G.E.2
Zhang, J.G.3
Moritz, R.L.4
Simpson, R.J.5
-
98
-
-
0036112210
-
Bacterial SsrA system plays a role in coping with unwanted translational readthrough caused by suppressor tRNAs
-
Ueda K, Yamamoto Y, Ogawa K, Abo T, Inokuchi H, Aiba H. 2002. Bacterial SsrA system plays a role in coping with unwanted translational readthrough caused by suppressor tRNAs. Genes Cells 7:509-19
-
(2002)
Genes Cells
, vol.7
, pp. 509-519
-
-
Ueda, K.1
Yamamoto, Y.2
Ogawa, K.3
Abo, T.4
Inokuchi, H.5
Aiba, H.6
-
99
-
-
0028170454
-
RNA-like structures in 10Sa RNAs of Mycoplasma capricolum and Bacillus subtilis
-
Ushida C, Himeno H, Watanabe T, Muto A. 1994. tRNA-like structures in 10Sa RNAs of Mycoplasma capricolum and Bacillus subtilis. Nucleic Acids Res. 22:3392-96
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 3392-3396
-
-
Ushida, C.1
Himeno, H.2
Watanabe, T.3
Muto, A.4
-
100
-
-
0036848756
-
Characterization of a specificity factor for an AAA+ ATPase. Assembly of SspB dimers with ssrA-tagged proteins and the ClpX hexamer
-
Wah DA, Levchenko I, Baker TA, Sauer RT. 2002. Characterization of a specificity factor for an AAA+ ATPase. Assembly of SspB dimers with ssrA-tagged proteins and the ClpX hexamer. Chem. Biol. 9:1237-45
-
(2002)
Chem. Biol.
, vol.9
, pp. 1237-1245
-
-
Wah, D.A.1
Levchenko, I.2
Baker, T.A.3
Sauer, R.T.4
-
101
-
-
0036924038
-
Take your vitamins with a pinch of RNA
-
Weisberg RA, Storz G. 2002. Take your vitamins with a pinch of RNA. Mol. Cell 10:1266-68
-
(2002)
Mol. Cell
, vol.10
, pp. 1266-1268
-
-
Weisberg, R.A.1
Storz, G.2
-
102
-
-
0034978976
-
SsrA-mediated tagging in Bacillus subtilis
-
Wiegert T, Schumann W 2001. SsrA-mediated tagging in Bacillus subtilis. J. Bacteriol. 183:3885-89
-
(2001)
J. Bacteriol.
, vol.183
, pp. 3885-3889
-
-
Wiegert, T.1
Schumann, W.2
-
103
-
-
0036567510
-
Descent of a split RNA
-
Williams KP. 2002. Descent of a split RNA. Nucleic Acids Res. 30:2025-30
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 2025-2030
-
-
Williams, K.P.1
-
104
-
-
0036084129
-
The tmRNA website: Invasion by an intron
-
Williams KP. 2002. The tmRNA website: invasion by an intron. Nucleic Acids Res. 30:179-82
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 179-182
-
-
Williams, K.P.1
-
105
-
-
0029907105
-
Phylogenetic analysis of tmRNA secondary structure
-
Williams KP, Bartel DP. 1996. Phylogenetic analysis of tmRNA secondary structure. Rna 2:1306-10
-
(1996)
Rna
, vol.2
, pp. 1306-1310
-
-
Williams, K.P.1
Bartel, D.P.2
-
106
-
-
0033215307
-
Resuming translation on tmRNA: A unique mode of determining a reading frame
-
Williams KP, Martindale KA, Bartel DP. 1999. Resuming translation on tmRNA: a unique mode of determining a reading frame. EMBO J. 18:5423-33
-
(1999)
EMBO J.
, vol.18
, pp. 5423-5433
-
-
Williams, K.P.1
Martindale, K.A.2
Bartel, D.P.3
-
107
-
-
0032913245
-
Analysis of the role of trans-translation in the requirement of tmRNA for lambdaimmP22 growth in Escherichia coli
-
Withey J, Friedman D. 1999. Analysis of the role of trans-translation in the requirement of tmRNA for lambdaimmP22 growth in Escherichia coli. J. Bacteriol. 181:2148-57
-
(1999)
J. Bacteriol.
, vol.181
, pp. 2148-2157
-
-
Withey, J.1
Friedman, D.2
-
110
-
-
0034423519
-
Binding and cross-linking of tmRNA to ribosomal protein S1, on and off the Escherichia coli ribosome
-
Wower IK, Zwieb CW, Guven SA, Wower J. 2000. Binding and cross-linking of tmRNA to ribosomal protein S1, on and off the Escherichia coli ribosome. EMBO J. 19:6612-21
-
(2000)
EMBO J.
, vol.19
, pp. 6612-6621
-
-
Wower, I.K.1
Zwieb, C.W.2
Guven, S.A.3
Wower, J.4
-
111
-
-
0037118708
-
SmpB: A protein that binds to double-stranded segments in tmRNA and tRNA
-
Wower J, Zwieb CW, Hoffman DW, Wower IK. 2002. SmpB: a protein that binds to double-stranded segments in tmRNA and tRNA. Biochemistry 41:8826-36
-
(2002)
Biochemistry
, vol.41
, pp. 8826-8836
-
-
Wower, J.1
Zwieb, C.W.2
Hoffman, D.W.3
Wower, I.K.4
-
112
-
-
0035861639
-
Complex of transfer-messenger RNA and elongation factor Tu. Unexpected modes of interaction
-
Zvereva MI, Ivanov PV, Teraoka Y, Topilina NI, Dontsova OA, et al. 2001. Complex of transfer-messenger RNA and elongation factor Tu. Unexpected modes of interaction. J. Biol. Chem. 276:47702-8
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 47702-47708
-
-
Zvereva, M.I.1
Ivanov, P.V.2
Teraoka, Y.3
Topilina, N.I.4
Dontsova, O.A.5
-
113
-
-
0035859794
-
Three-dimensional folding of the tRNA-like domain of Escherichia coli tmRNA
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Zwieb C, Guven SA, Wower IK, Wower J. 2001. Three-dimensional folding of the tRNA-like domain of Escherichia coli tmRNA. Biochemistry 40:9587-95
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(2001)
Biochemistry
, vol.40
, pp. 9587-9595
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Zwieb, C.1
Guven, S.A.2
Wower, I.K.3
Wower, J.4
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