-
1
-
-
0031029659
-
Evolution and dissemination of β-lactamases accelerated by generations of β-lactam antibiotics
-
Medeiros AA. Evolution and dissemination of β-lactamases accelerated by generations of β-lactam antibiotics. Clin Infect Dis 1997;24(Suppl 1):S19-S45.
-
(1997)
Clin Infect Dis
, vol.24
, Issue.SUPPL. 1
-
-
Medeiros, A.A.1
-
2
-
-
23444440823
-
Inactivation of antibiotics and the dissemination of resistance genes
-
Davies J. Inactivation of antibiotics and the dissemination of resistance genes. Science 1994;264:375-382.
-
(1994)
Science
, vol.264
, pp. 375-382
-
-
Davies, J.1
-
3
-
-
0013850042
-
Penicillinase synthesis controlled by infectious R factors in Enterobacteriaceae
-
Datta N, Kontomichalou P. Penicillinase synthesis controlled by infectious R factors in Enterobacteriaceae. Nature 1965;208:239-241.
-
(1965)
Nature
, vol.208
, pp. 239-241
-
-
Datta, N.1
Kontomichalou, P.2
-
4
-
-
2442549622
-
Predicting the evolution of antibiotic resistance genes
-
Hall BG. Predicting the evolution of antibiotic resistance genes. Nat Rev Microbiol 2004;2:430-435.
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 430-435
-
-
Hall, B.G.1
-
5
-
-
0035122917
-
Predicting the emergence of antibiotic resistance by directed evolution and structural analysis
-
Orencia MC, Yoon JS, Ness JE, Stemmer WP, Stevens RC. Predicting the emergence of antibiotic resistance by directed evolution and structural analysis. Nat Struct Biol 2001;8:238-242.
-
(2001)
Nat Struct Biol
, vol.8
, pp. 238-242
-
-
Orencia, M.C.1
Yoon, J.S.2
Ness, J.E.3
Stemmer, W.P.4
Stevens, R.C.5
-
6
-
-
0028870390
-
TEM-1 β-lactamase structure solved by molecular replacement and refined structure of the S235A mutant
-
Fonzé E, Charlier P, To'th Y, Vermeire M, Raquet X, Dubus A, Frère JM. TEM-1 β-lactamase structure solved by molecular replacement and refined structure of the S235A mutant. Acta Crystallogr D Biol Crystallogr 1995;51:682-694.
-
(1995)
Acta Crystallogr D Biol Crystallogr
, vol.51
, pp. 682-694
-
-
Fonzé, E.1
Charlier, P.2
To'th, Y.3
Vermeire, M.4
Raquet, X.5
Dubus, A.6
Frère, J.M.7
-
7
-
-
0027275788
-
Crystal structure of Escherichia coli TEM-1 β-lactamase at 1.8 Å resolution
-
Jelsch C, Mourey L, Masson JM, Samama JP. Crystal structure of Escherichia coli TEM-1 β-lactamase at 1.8 Å resolution. Proteins 1993;16:364-383.
-
(1993)
Proteins
, vol.16
, pp. 364-383
-
-
Jelsch, C.1
Mourey, L.2
Masson, J.M.3
Samama, J.P.4
-
8
-
-
25144503869
-
Structure of the wild-type TEM-1 β-lactamase at 1.55 Å and the mutant enzyme Ser70Ala at 2.1 Å suggest the mode of noncovalent catalysis for the mutant enzyme
-
Stec B, Holtz KM, Wojciechowski CL, Kantrowitz ER. Structure of the wild-type TEM-1 β-lactamase at 1.55 Å and the mutant enzyme Ser70Ala at 2.1 Å suggest the mode of noncovalent catalysis for the mutant enzyme. Acta Crystallogr D Biol Crystallogr 2005;61:1072-1079.
-
(2005)
Acta Crystallogr D Biol Crystallogr
, vol.61
, pp. 1072-1079
-
-
Stec, B.1
Holtz, K.M.2
Wojciechowski, C.L.3
Kantrowitz, E.R.4
-
9
-
-
0033609444
-
X-ray structure of the Asn276Asp variant of the Escherichia coli TEM-1 β-lactamase: Direct observation of electrostatic modulation in resistance to inactivation by clavulanic acid
-
Swarén P, Golemi D, Cabantous S, Bulychev A, Maveyraud L, Mobashery S, Samama JP. X-ray structure of the Asn276Asp variant of the Escherichia coli TEM-1 β-lactamase: direct observation of electrostatic modulation in resistance to inactivation by clavulanic acid. Biochemistry 1999;38:9570-9576.
-
(1999)
Biochemistry
, vol.38
, pp. 9570-9576
-
-
Swarén, P.1
Golemi, D.2
Cabantous, S.3
Bulychev, A.4
Maveyraud, L.5
Mobashery, S.6
Samama, J.P.7
-
10
-
-
21644480798
-
Structural consequences of the inhibitor-resistant Ser130Gly substitution in TEM β-lactamase
-
Thomas VL, Golemi-Kotra D, Kim C, Vakulenko SB, Mobashery S, Shoichet BK. Structural consequences of the inhibitor-resistant Ser130Gly substitution in TEM β-lactamase. Biochemistry 2005;44:9330-9338.
-
(2005)
Biochemistry
, vol.44
, pp. 9330-9338
-
-
Thomas, V.L.1
Golemi-Kotra, D.2
Kim, C.3
Vakulenko, S.B.4
Mobashery, S.5
Shoichet, B.K.6
-
11
-
-
0037200056
-
The structural bases of antibiotic resistance in the clinically derived mutant β-lactamases TEM-30, TEM-32, and TEM-34
-
Wang X, Minasov G, Shoichet BK. The structural bases of antibiotic resistance in the clinically derived mutant β-lactamases TEM-30, TEM-32, and TEM-34. J Biol Chem 2002;277:32149-32156.
-
(2002)
J Biol Chem
, vol.277
, pp. 32149-32156
-
-
Wang, X.1
Minasov, G.2
Shoichet, B.K.3
-
12
-
-
0036295508
-
Evolution of an antibiotic resistance enzyme constrained by stability and activity trade-offs
-
Wang X, Minasov G, Shoichet BK. Evolution of an antibiotic resistance enzyme constrained by stability and activity trade-offs. J Mol Biol 2002;320:85-95.
-
(2002)
J Mol Biol
, vol.320
, pp. 85-95
-
-
Wang, X.1
Minasov, G.2
Shoichet, B.K.3
-
13
-
-
0026801518
-
Molecular structure of the acyl-enzyme intermediate in β-lactam hydrolysis at 1.7 Å resolution
-
Strynadka NC, Adachi H, Jensen SE, Johns K, Sielecki A, Betzel C, Sutoh K, James MN. Molecular structure of the acyl-enzyme intermediate in β-lactam hydrolysis at 1.7 Å resolution. Nature 1992;359:700-705.
-
(1992)
Nature
, vol.359
, pp. 700-705
-
-
Strynadka, N.C.1
Adachi, H.2
Jensen, S.E.3
Johns, K.4
Sielecki, A.5
Betzel, C.6
Sutoh, K.7
James, M.N.8
-
14
-
-
1242294467
-
Allosteric inhibition through core disruption
-
Horn JR, Shoichet BK. Allosteric inhibition through core disruption. J Mol Biol 2004;336:1283-1291.
-
(2004)
J Mol Biol
, vol.336
, pp. 1283-1291
-
-
Horn, J.R.1
Shoichet, B.K.2
-
15
-
-
0034804715
-
Crystal structure and kinetic analysis of β-lactamase inhibitor protein-II in complex with TEM-1 β-lactamase
-
Lim D, Park HU, De Castro L, Kang SG, Lee HS, Jensen S, Lee KJ, Strynadka NC. Crystal structure and kinetic analysis of β-lactamase inhibitor protein-II in complex with TEM-1 β-lactamase. Nat Struct Biol 2001;8:848-852.
-
(2001)
Nat Struct Biol
, vol.8
, pp. 848-852
-
-
Lim, D.1
Park, H.U.2
De Castro, L.3
Kang, S.G.4
Lee, H.S.5
Jensen, S.6
Lee, K.J.7
Strynadka, N.C.8
-
16
-
-
0032581949
-
Structural basis for clinical longevity of carbapenem antibiotics in the face of challenge by the common class A β-lactamases from the antibiotic-resistant bacteria
-
Maveyraud L, Mourey L, Kotra LP, Pedelacq JD, Guillet V, Mobashery S, Samama JP. Structural basis for clinical longevity of carbapenem antibiotics in the face of challenge by the common class A β-lactamases from the antibiotic-resistant bacteria. J Am Chem Soc 1998;120:9748-9752.
-
(1998)
J Am Chem Soc
, vol.120
, pp. 9748-9752
-
-
Maveyraud, L.1
Mourey, L.2
Kotra, L.P.3
Pedelacq, J.D.4
Guillet, V.5
Mobashery, S.6
Samama, J.P.7
-
17
-
-
0034625157
-
Structure-based design guides the improved efficacy of deacylation transition state analogue inhibitors of TEM-1 β-lactamase
-
Ness S, Martin R, Kindler AM, Paetzel M, Gold M, Jensen SE, Jones JB, Strynadka NC. Structure-based design guides the improved efficacy of deacylation transition state analogue inhibitors of TEM-1 β-lactamase. Biochemistry 2000;39:5312-5321.
-
(2000)
Biochemistry
, vol.39
, pp. 5312-5321
-
-
Ness, S.1
Martin, R.2
Kindler, A.M.3
Paetzel, M.4
Gold, M.5
Jensen, S.E.6
Jones, J.B.7
Strynadka, N.C.8
-
18
-
-
0038117767
-
Recognition and resistance in TEM β-lactamase
-
Wang X, Minasov G, Blázquez J, Caselli E, Prati F, Shoichet BK. Recognition and resistance in TEM β-lactamase. Biochemistry 2003;42:8434-8444.
-
(2003)
Biochemistry
, vol.42
, pp. 8434-8444
-
-
Wang, X.1
Minasov, G.2
Blázquez, J.3
Caselli, E.4
Prati, F.5
Shoichet, B.K.6
-
19
-
-
0036533471
-
Noncovalent interaction energies in covalent complexes: TEM-1 β-lactamase and β-lactams
-
Wang X, Minasov G, Shoichet BK. Noncovalent interaction energies in covalent complexes: TEM-1 β-lactamase and β-lactams. Proteins 2002;47:86-96.
-
(2002)
Proteins
, vol.47
, pp. 86-96
-
-
Wang, X.1
Minasov, G.2
Shoichet, B.K.3
-
20
-
-
0032562183
-
Crystal structure of an acylation transition-state analog of the TEM-1 β-lactamase. Mechanistic implications for class A β-lactamases
-
Maveyraud L, Pratt RF, Samama JP. Crystal structure of an acylation transition-state analog of the TEM-1 β-lactamase. Mechanistic implications for class A β-lactamases. Biochemistry 1998;37:2622-2628.
-
(1998)
Biochemistry
, vol.37
, pp. 2622-2628
-
-
Maveyraud, L.1
Pratt, R.F.2
Samama, J.P.3
-
21
-
-
0037094114
-
An ultrahigh resolution structure of TEM-1 β-lactamase suggests a role for Glu166 as the general base in acylation
-
Minasov G, Wang XJ, Shoichet BK. An ultrahigh resolution structure of TEM-1 β-lactamase suggests a role for Glu166 as the general base in acylation. J Am Chem Soc 2002;124:5333-5340.
-
(2002)
J Am Chem Soc
, vol.124
, pp. 5333-5340
-
-
Minasov, G.1
Wang, X.J.2
Shoichet, B.K.3
-
22
-
-
8544219754
-
Site-saturation mutagenesis of Tyr-105 reveals its importance in substrate stabilization and discrimination in TEM-1 β-lactamase
-
Doucet N, De Wals PY, Pelletier JN. Site-saturation mutagenesis of Tyr-105 reveals its importance in substrate stabilization and discrimination in TEM-1 β-lactamase. J Biol Chem 2004;279:46295-46303.
-
(2004)
J Biol Chem
, vol.279
, pp. 46295-46303
-
-
Doucet, N.1
De Wals, P.Y.2
Pelletier, J.N.3
-
23
-
-
0034663722
-
-
Lovell SC, Word JM, Richardson JS, Richardson DC. The penultimate rotamer library. Proteins 2000;40:389-408.
-
Lovell SC, Word JM, Richardson JS, Richardson DC. The penultimate rotamer library. Proteins 2000;40:389-408.
-
-
-
-
24
-
-
0027208112
-
Rotamers: To be or not to be? An analysis of amino acid side-chain conformations in globular proteins
-
Schrauber H, Eisenhaber F, Argos P. Rotamers: to be or not to be? An analysis of amino acid side-chain conformations in globular proteins. J Mol Biol 1993;230:592-612.
-
(1993)
J Mol Biol
, vol.230
, pp. 592-612
-
-
Schrauber, H.1
Eisenhaber, F.2
Argos, P.3
-
25
-
-
0029760859
-
Structure-based design of a potent transition state analogue for TEM-1 β-lactamase
-
Strynadka NCJ, Martin R, Jensen SE, Gold M, Jones JB. Structure-based design of a potent transition state analogue for TEM-1 β-lactamase. Nat Struct Biol 1996;3:688-695.
-
(1996)
Nat Struct Biol
, vol.3
, pp. 688-695
-
-
Strynadka, N.C.J.1
Martin, R.2
Jensen, S.E.3
Gold, M.4
Jones, J.B.5
-
26
-
-
0029949210
-
A potent new mode of β-lactamase inhibition revealed by the 1.7 Å X-ray crystallography structure of the TEM-1-BLIP complex
-
Strynadka NC, Jensen SE, Alzari PM, James MN. A potent new mode of β-lactamase inhibition revealed by the 1.7 Å X-ray crystallography structure of the TEM-1-BLIP complex. Nat Struct Biol 1996;3:290-297.
-
(1996)
Nat Struct Biol
, vol.3
, pp. 290-297
-
-
Strynadka, N.C.1
Jensen, S.E.2
Alzari, P.M.3
James, M.N.4
-
27
-
-
33749007969
-
Backbone dynamics of TEM-1 determined by NMR: Evidence for a highly ordered protein
-
Savard PY, Gagne SM. Backbone dynamics of TEM-1 determined by NMR: evidence for a highly ordered protein. Biochemistry 2006;45:11414-11424.
-
(2006)
Biochemistry
, vol.45
, pp. 11414-11424
-
-
Savard, P.Y.1
Gagne, S.M.2
-
28
-
-
0031427720
-
Molecular modeling of the conformational complexity of (+)-anti-B[a]PDE-adducted DNA using simulated annealing
-
Kozack RE, Loechler EL. Molecular modeling of the conformational complexity of (+)-anti-B[a]PDE-adducted DNA using simulated annealing. Carcinogenesis 1997;18:1585-1593.
-
(1997)
Carcinogenesis
, vol.18
, pp. 1585-1593
-
-
Kozack, R.E.1
Loechler, E.L.2
-
29
-
-
1242338103
-
Conformational sampling for the impatient
-
Tai K. Conformational sampling for the impatient. Biophys Chem 2004;107:213-220.
-
(2004)
Biophys Chem
, vol.107
, pp. 213-220
-
-
Tai, K.1
-
30
-
-
0024519351
-
Treatment of electrostatic effects in macromolecular modeling
-
Harvey SC. Treatment of electrostatic effects in macromolecular modeling. Proteins 1989;5:78-92.
-
(1989)
Proteins
, vol.5
, pp. 78-92
-
-
Harvey, S.C.1
-
31
-
-
0036284090
-
VEGA: A versatile program to convert, handle and visualize molecular structure on Windows-based PCs
-
Pedretti A, Villa L, Vistoli G. VEGA: a versatile program to convert, handle and visualize molecular structure on Windows-based PCs. J Mol Graph Model 2002;21:47-49.
-
(2002)
J Mol Graph Model
, vol.21
, pp. 47-49
-
-
Pedretti, A.1
Villa, L.2
Vistoli, G.3
-
32
-
-
4043162793
-
An open platform to develop chemo-bio-informatics applications, using plug-in architecture and script programming
-
Pedretti A, Villa L, Vistoli G. VEGA. An open platform to develop chemo-bio-informatics applications, using plug-in architecture and script programming. J Comput Aided Mol Des 2004;18:167-173.
-
(2004)
J Comput Aided Mol Des
, vol.18
, pp. 167-173
-
-
Pedretti, A.1
Villa, L.2
Vistoli, G.3
VEGA4
-
33
-
-
0037441653
-
-
Lovell SC, Davis IW, Arendall WB, III, de Bakker PI, Word JM, Prisant MG, Richardson JS, Richardson DC. Structure validation by Cα geometry: φ, ψ and Cβ deviation. Proteins 2003;50:437-450.
-
Lovell SC, Davis IW, Arendall WB, III, de Bakker PI, Word JM, Prisant MG, Richardson JS, Richardson DC. Structure validation by Cα geometry: φ, ψ and Cβ deviation. Proteins 2003;50:437-450.
-
-
-
-
34
-
-
32544436601
-
Multiple alignment of protein structures and sequences for VMD
-
Eargle J, Wright D, Luthey-Schulten Z. Multiple alignment of protein structures and sequences for VMD. Bioinformatics 2006;22:504-506.
-
(2006)
Bioinformatics
, vol.22
, pp. 504-506
-
-
Eargle, J.1
Wright, D.2
Luthey-Schulten, Z.3
-
36
-
-
0036135747
-
Protein-ligand recognition using spherical harmonic molecular surfaces: Towards a fast and efficient filter for large virtual throughput screening
-
Cai W, Shao X, Maigret B. Protein-ligand recognition using spherical harmonic molecular surfaces: towards a fast and efficient filter for large virtual throughput screening. J Mol Graph Model 2002;20:313-328.
-
(2002)
J Mol Graph Model
, vol.20
, pp. 313-328
-
-
Cai, W.1
Shao, X.2
Maigret, B.3
-
37
-
-
0034875587
-
Evaluation of site-directed spin labeling for characterizing protein-ligand complexes using simulated restraints
-
Constantine KL. Evaluation of site-directed spin labeling for characterizing protein-ligand complexes using simulated restraints. Biophys J 2001;81:1275-1284.
-
(2001)
Biophys J
, vol.81
, pp. 1275-1284
-
-
Constantine, K.L.1
-
38
-
-
0037199417
-
NMR structure of lung surfactant peptide SP-B(11-25)
-
Kurutz JW, Lee KY. NMR structure of lung surfactant peptide SP-B(11-25). Biochemistry 2002;41:9627-9636.
-
(2002)
Biochemistry
, vol.41
, pp. 9627-9636
-
-
Kurutz, J.W.1
Lee, K.Y.2
-
39
-
-
31544478873
-
Protein-protein interactions: Modeling the hepatitis C virus ion channel p 7
-
Patargias G, Zitzmann N, Dwek R, Fischer WB. Protein-protein interactions: modeling the hepatitis C virus ion channel p 7. J Med Chem 2006;49:648-655.
-
(2006)
J Med Chem
, vol.49
, pp. 648-655
-
-
Patargias, G.1
Zitzmann, N.2
Dwek, R.3
Fischer, W.B.4
-
40
-
-
0037460169
-
Insights into the acylation mechanism of class A β-lactamases from molecular dynamics simulations of the TEM-1 enzyme complexed with benzylpenicillin
-
Díaz N, Sordo TL, Merz KM, Suárez D. Insights into the acylation mechanism of class A β-lactamases from molecular dynamics simulations of the TEM-1 enzyme complexed with benzylpenicillin. J Am Chem Soc 2003;125:672-684.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 672-684
-
-
Díaz, N.1
Sordo, T.L.2
Merz, K.M.3
Suárez, D.4
-
41
-
-
13444302257
-
Molecular dynamics simulations of the TEM-1 β-lactamase complexed with cephalothin
-
Díaz N, Suárez D, Merz KM, Sordo TL. Molecular dynamics simulations of the TEM-1 β-lactamase complexed with cephalothin. J Med Chem 2005;48:780-791.
-
(2005)
J Med Chem
, vol.48
, pp. 780-791
-
-
Díaz, N.1
Suárez, D.2
Merz, K.M.3
Sordo, T.L.4
|