메뉴 건너뛰기




Volumn 46, Issue 25, 2007, Pages 7383-7395

Probing electrostatic interactions along the reaction pathway of a glycoside hydrolase: Histidine characterization by NMR spectroscopy

Author keywords

[No Author keywords available]

Indexed keywords

COULOMB INTERACTIONS; HYDROGEN; IONIZATION; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PH EFFECTS; TITRATION;

EID: 34250823484     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi700249m     Document Type: Article
Times cited : (38)

References (70)
  • 1
    • 0000037162 scopus 로고    scopus 로고
    • Contributions of NMR spectroscopy to the study of hydrogen bonds in serine protease active sites
    • Bachovchin, W. W. (2001) Contributions of NMR spectroscopy to the study of hydrogen bonds in serine protease active sites, Magn. Reson. Chem. 39, S199-S213.
    • (2001) Magn. Reson. Chem , vol.39
    • Bachovchin, W.W.1
  • 2
    • 0022493148 scopus 로고
    • Structure of the gene encoding the exoglucanase of Cellulomonas fimi
    • O'Neill, G., Goh, S. H., Warren, R. A., Kilburn, D. G., and Miller, R. C., Jr. (1986) Structure of the gene encoding the exoglucanase of Cellulomonas fimi, Gene 44, 325-330.
    • (1986) Gene , vol.44 , pp. 325-330
    • O'Neill, G.1    Goh, S.H.2    Warren, R.A.3    Kilburn, D.G.4    Miller Jr., R.C.5
  • 3
    • 33847273166 scopus 로고    scopus 로고
    • Direct demonstration of the flexibility of the glycosylated proline-threonine linker in the Cellulomonas fimi xylanase Cex through NMR spectroscopic analysis
    • Poon, D. K., Withers, S. G., and McIntosh, L. P. (2006) Direct demonstration of the flexibility of the glycosylated proline-threonine linker in the Cellulomonas fimi xylanase Cex through NMR spectroscopic analysis, J. Biol. Chem. 282, 2091-2100.
    • (2006) J. Biol. Chem , vol.282 , pp. 2091-2100
    • Poon, D.K.1    Withers, S.G.2    McIntosh, L.P.3
  • 4
    • 0032492715 scopus 로고    scopus 로고
    • Exploring the cellulose/xylan specificity of the β-1,4-glycanase Cex from Cellulomonas fimi through crystallography and mutation
    • Notenboom, V., Birsan, C., Warren, R. A. J., Withers, S. G., and Rose, D. R. (1998) Exploring the cellulose/xylan specificity of the β-1,4-glycanase Cex from Cellulomonas fimi through crystallography and mutation, Biochemistry 37, 4751-4758.
    • (1998) Biochemistry , vol.37 , pp. 4751-4758
    • Notenboom, V.1    Birsan, C.2    Warren, R.A.J.3    Withers, S.G.4    Rose, D.R.5
  • 5
    • 0030052194 scopus 로고    scopus 로고
    • Crystallographic observation of a covalent catalytic intermediate in a β-glycosidase
    • White, A., Tull, D., Johns, K., Withers, S. G., and Rose, D. R. (1996) Crystallographic observation of a covalent catalytic intermediate in a β-glycosidase, Nat. Struct. Biol. 3, 149-154.
    • (1996) Nat. Struct. Biol , vol.3 , pp. 149-154
    • White, A.1    Tull, D.2    Johns, K.3    Withers, S.G.4    Rose, D.R.5
  • 6
    • 0001973467 scopus 로고    scopus 로고
    • Carbohydrate-active enzymes: An integrated database approach
    • Gilbert, H. J, Davies, G, Henrissat, B, and Svensson, B, Eds, pp, The Royal Society of Chemistry, London
    • Coutinho, P. M., and Henrissat, B. (1999) Carbohydrate-active enzymes: An integrated database approach, in Recent Advances in Carbohydrate Bioengineering (Gilbert, H. J., Davies, G., Henrissat, B., and Svensson, B., Eds.) pp 3-12, The Royal Society of Chemistry, London.
    • (1999) Recent Advances in Carbohydrate Bioengineering , pp. 3-12
    • Coutinho, P.M.1    Henrissat, B.2
  • 8
    • 0028224697 scopus 로고
    • Mechanisms of cellulases and xylanases: A detailed kinetic study of the exo-β-1,4-glycanase from Cellulomonas fimi
    • Tull, D., and Withers, S. G. (1994) Mechanisms of cellulases and xylanases: A detailed kinetic study of the exo-β-1,4-glycanase from Cellulomonas fimi, Biochemistry 33, 6363-6370.
    • (1994) Biochemistry , vol.33 , pp. 6363-6370
    • Tull, D.1    Withers, S.G.2
  • 9
    • 0028303157 scopus 로고
    • The acid/base catalyst in the exoglucanase/xylanase from Cellulomonas fimi is glutamic acid 127: Evidence from detailed kinetic studies on mutants
    • MacLeod, A. M., Lindhorst, T., Withers, S. G., and Warren, R. A. J. (1994) The acid/base catalyst in the exoglucanase/xylanase from Cellulomonas fimi is glutamic acid 127: Evidence from detailed kinetic studies on mutants, Biochemistry 33, 6571-6376.
    • (1994) Biochemistry , vol.33 , pp. 6571-6376
    • MacLeod, A.M.1    Lindhorst, T.2    Withers, S.G.3    Warren, R.A.J.4
  • 10
    • 0034718568 scopus 로고    scopus 로고
    • Detailed structural analysis of glycosidase/inhibitor interactions: Complexes of Cex from Cellulomonas fimi with xylobiose-derived aza-sugars
    • Notenboom, V., Williams, S. J., Hoos, R., Withers, S. G., and Rose, D. R. (2000) Detailed structural analysis of glycosidase/inhibitor interactions: Complexes of Cex from Cellulomonas fimi with xylobiose-derived aza-sugars, Biochemistry 39, 11553-11563.
    • (2000) Biochemistry , vol.39 , pp. 11553-11563
    • Notenboom, V.1    Williams, S.J.2    Hoos, R.3    Withers, S.G.4    Rose, D.R.5
  • 11
    • 0034654133 scopus 로고    scopus 로고
    • Nanomolar versus millimolar inhibition by xylobiose-derived azasugars: Significant differences between two structurally distinct xylanases
    • Williams, S. J., Hoos, R., and Withers, S. G. (2000) Nanomolar versus millimolar inhibition by xylobiose-derived azasugars: Significant differences between two structurally distinct xylanases, J. Am. Chem. Soc. 122, 2223-2235.
    • (2000) J. Am. Chem. Soc , vol.122 , pp. 2223-2235
    • Williams, S.J.1    Hoos, R.2    Withers, S.G.3
  • 12
    • 33847058858 scopus 로고    scopus 로고
    • NMR spectroscopic characterization of a β-(1,4)-glycosidase along its reaction pathway: Stabilization upon formation of the glycosyl-enzyme intermediate
    • Poon, D. K. Y., Ludwiczek, M. L., Schubert, M., Kwan, E. M., Withers, S. G., and McIntosh, L. P. (2007) NMR spectroscopic characterization of a β-(1,4)-glycosidase along its reaction pathway: Stabilization upon formation of the glycosyl-enzyme intermediate, Biochemistry 46, 1759-1770.
    • (2007) Biochemistry , vol.46 , pp. 1759-1770
    • Poon, D.K.Y.1    Ludwiczek, M.L.2    Schubert, M.3    Kwan, E.M.4    Withers, S.G.5    McIntosh, L.P.6
  • 13
    • 0024836418 scopus 로고
    • Expression and nitrogen-15 labeling of proteins for proton and nitrogen-15 nuclear magnetic resonance
    • Muchmore, D. C., McIntosh, L. P., Russell, C. B., Anderson, D. E., and Dahlquist, F. W. (1989) Expression and nitrogen-15 labeling of proteins for proton and nitrogen-15 nuclear magnetic resonance, Methods Enzymol. 177, 44-73.
    • (1989) Methods Enzymol , vol.177 , pp. 44-73
    • Muchmore, D.C.1    McIntosh, L.P.2    Russell, C.B.3    Anderson, D.E.4    Dahlquist, F.W.5
  • 14
    • 0029400480 scopus 로고
    • NMRPipe: A multidimensional spectral processing system based on UNIX pipes
    • Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) NMRPipe: A multidimensional spectral processing system based on UNIX pipes, J. Biomol. NMR 6, 277- 293.
    • (1995) J. Biomol. NMR , vol.6 , pp. 277-293
    • Delaglio, F.1    Grzesiek, S.2    Vuister, G.W.3    Zhu, G.4    Pfeifer, J.5    Bax, A.6
  • 15
    • 0004040543 scopus 로고    scopus 로고
    • 3rd ed, University of California, San Francisco
    • Goddard, T. D., and Kneeler, D. G. (1999) Sparky 3, 3rd ed., University of California, San Francisco.
    • (1999) Sparky 3
    • Goddard, T.D.1    Kneeler, D.G.2
  • 17
    • 0000521134 scopus 로고
    • Spin-echo water suppression for the generation of pure-phase two-dimensional NMR spectra
    • Sklenár, V., and Bax, A. (1987) Spin-echo water suppression for the generation of pure-phase two-dimensional NMR spectra, J. Magn. Reson. 74, 469-479.
    • (1987) J. Magn. Reson , vol.74 , pp. 469-479
    • Sklenár, V.1    Bax, A.2
  • 18
    • 0006925492 scopus 로고
    • Pure absorption gradient enhanced heteronuclear single quantum correlation spectroscopy with improved sensitivity
    • Kay, L. E., Keifer, P., and Saarinen, T. (1992) Pure absorption gradient enhanced heteronuclear single quantum correlation spectroscopy with improved sensitivity, J. Am. Chem. Soc. 114, 10663-10665.
    • (1992) J. Am. Chem. Soc , vol.114 , pp. 10663-10665
    • Kay, L.E.1    Keifer, P.2    Saarinen, T.3
  • 19
    • 0030767535 scopus 로고    scopus 로고
    • pH titration studies of an SH2 domain-phosphopeptide complex: Unusual histidine and phosphate pKa values
    • Singer, A. U., and Forman-Kay, J. D. (1997) pH titration studies of an SH2 domain-phosphopeptide complex: Unusual histidine and phosphate pKa values, Protein Sci. 6, 1910-1919.
    • (1997) Protein Sci , vol.6 , pp. 1910-1919
    • Singer, A.U.1    Forman-Kay, J.D.2
  • 20
    • 44049118414 scopus 로고
    • A constant-time 2D Overbodenhausen experiment for inverse correlation of isotopically enriched species
    • Santoro, J., and King, G. C. (1992) A constant-time 2D Overbodenhausen experiment for inverse correlation of isotopically enriched species, J. Magn. Reson. 97, 202-207.
    • (1992) J. Magn. Reson , vol.97 , pp. 202-207
    • Santoro, J.1    King, G.C.2
  • 21
    • 0000451529 scopus 로고    scopus 로고
    • Improved HSQC experiments for the observation of exchange broadened signals
    • Mulder, F. A. A., Spronk, C., Slijper, M., Kaptein, R., and Boelens, R. (1996) Improved HSQC experiments for the observation of exchange broadened signals, J. Biomol. NMR 8, 223-228.
    • (1996) J. Biomol. NMR , vol.8 , pp. 223-228
    • Mulder, F.A.A.1    Spronk, C.2    Slijper, M.3    Kaptein, R.4    Boelens, R.5
  • 23
    • 0032454835 scopus 로고    scopus 로고
    • Assigning the NMR spectra of aromatic amino acids in proteins: Analysis of two ETS pointed domains
    • Slupsky, C. M., Gentile, L. N., and McIntosh, L. P. (1998) Assigning the NMR spectra of aromatic amino acids in proteins: Analysis of two ETS pointed domains, Biochem. Cell Biol. 76, 379-390.
    • (1998) Biochem. Cell Biol , vol.76 , pp. 379-390
    • Slupsky, C.M.1    Gentile, L.N.2    McIntosh, L.P.3
  • 24
    • 0032042263 scopus 로고    scopus 로고
    • Ottiger, M., Delaglio, F., and Bax, A. (1998) Measurement of J and dipolar couplings from simplified two-dimensional NRM spectra, J. Magn. Reson. 131, 373-378.
    • Ottiger, M., Delaglio, F., and Bax, A. (1998) Measurement of J and dipolar couplings from simplified two-dimensional NRM spectra, J. Magn. Reson. 131, 373-378.
  • 25
    • 0032539528 scopus 로고    scopus 로고
    • Characterization of a buried neutral histidine in Bacillus circulans xylanase: Internal dynamics and interaction with a bound water molecule
    • Connelly, G. P., and McIntosh, L. P. (1998) Characterization of a buried neutral histidine in Bacillus circulans xylanase: Internal dynamics and interaction with a bound water molecule, Biochemistry 37, 1810-1818.
    • (1998) Biochemistry , vol.37 , pp. 1810-1818
    • Connelly, G.P.1    McIntosh, L.P.2
  • 26
    • 0031989849 scopus 로고    scopus 로고
    • Accurate quantitation of water-amide proton exchange rates using the phase-modulated CLEAN chemical Exchange (CLEANEX-PM) approach with a fast-HSQC (FHSQC) detection scheme
    • Hwang, T.-L., van Zijl, P. C. M., and Mori, S. (1998) Accurate quantitation of water-amide proton exchange rates using the phase-modulated CLEAN chemical Exchange (CLEANEX-PM) approach with a fast-HSQC (FHSQC) detection scheme, J. Biomol. NMR 11, 221-226.
    • (1998) J. Biomol. NMR , vol.11 , pp. 221-226
    • Hwang, T.-L.1    van Zijl, P.C.M.2    Mori, S.3
  • 27
    • 0035964164 scopus 로고    scopus 로고
    • Dissecting the electrostatic interactions and pH-dependent activity of a family 11 glycosidase
    • Joshi, M. D., Sidhu, G., Nielsen, J. E., Brayer, G. D., Withers, S. G., and McIntosh, L. P. (2001) Dissecting the electrostatic interactions and pH-dependent activity of a family 11 glycosidase, Biochemistry 40, 10115-10139.
    • (2001) Biochemistry , vol.40 , pp. 10115-10139
    • Joshi, M.D.1    Sidhu, G.2    Nielsen, J.E.3    Brayer, G.D.4    Withers, S.G.5    McIntosh, L.P.6
  • 28
    • 0031715607 scopus 로고    scopus 로고
    • Insights into transition state stabilization of the β-1,4-glycosidase Cex by covalent intermediate accumulation in active site mutants
    • Notenboom, V., Birsan, C., Nitz, M., Rose, D. R., Warren, R. A. J., and Withers, S. G. (1998) Insights into transition state stabilization of the β-1,4-glycosidase Cex by covalent intermediate accumulation in active site mutants, Nat. Struct. Biol. 5, 812-818.
    • (1998) Nat. Struct. Biol , vol.5 , pp. 812-818
    • Notenboom, V.1    Birsan, C.2    Nitz, M.3    Rose, D.R.4    Warren, R.A.J.5    Withers, S.G.6
  • 29
    • 0027456412 scopus 로고
    • Tautomeric states of the active-site histindines of phosphorylated and unphosphorylated IIIGlc, a signal-transducing protein from Escherichia coli, using two-dimensional heteronuclear NMR techniques
    • Pelton, J. G., Torchia, D. A., Meadow, N. D., and Roseman, S. (1993) Tautomeric states of the active-site histindines of phosphorylated and unphosphorylated IIIGlc, a signal-transducing protein from Escherichia coli, using two-dimensional heteronuclear NMR techniques, Protein Sci. 2, 543-558.
    • (1993) Protein Sci , vol.2 , pp. 543-558
    • Pelton, J.G.1    Torchia, D.A.2    Meadow, N.D.3    Roseman, S.4
  • 31
    • 0000825357 scopus 로고
    • 1H-detected heteronuclear multiple-bond correlation spectroscopy
    • 1H-detected heteronuclear multiple-bond correlation spectroscopy, J. Magn. Reson. 78, 186-191.
    • (1988) J. Magn. Reson , vol.78 , pp. 186-191
    • Bax, A.1    Marion, D.2
  • 33
    • 0029843569 scopus 로고    scopus 로고
    • Characterization of a buried neutral histidine residue in Bacillus circulans xylanase: NMR assignments, pH titration, and hydrogen exchange
    • Plesniak, L. A., Connelly, G. P., Wakarchuk, W. W., and McIntosh, L. P. (1996) Characterization of a buried neutral histidine residue in Bacillus circulans xylanase: NMR assignments, pH titration, and hydrogen exchange, Protein Sci. 5, 2319-2328.
    • (1996) Protein Sci , vol.5 , pp. 2319-2328
    • Plesniak, L.A.1    Connelly, G.P.2    Wakarchuk, W.W.3    McIntosh, L.P.4
  • 34
    • 0033556707 scopus 로고    scopus 로고
    • Properties of the His57-Asp102 dyad of rat trypsin D189S in the zymogen, activated enzyme, and α1-proteinase inhibitor complexed forms
    • Kaslik, G., Westler, W. M., Graf, L., and Markley, J. L. (1999) Properties of the His57-Asp102 dyad of rat trypsin D189S in the zymogen, activated enzyme, and α1-proteinase inhibitor complexed forms, Arch. Biochem. Biophys. 262, 254-264.
    • (1999) Arch. Biochem. Biophys , vol.262 , pp. 254-264
    • Kaslik, G.1    Westler, W.M.2    Graf, L.3    Markley, J.L.4
  • 35
    • 0028170657 scopus 로고
    • pH titration of the histidine residues of cyclophilin and FK506 binding protein in the absence and presence of immunosuppressant ligands
    • Yu, L., and Fesik, S. W. (1994) pH titration of the histidine residues of cyclophilin and FK506 binding protein in the absence and presence of immunosuppressant ligands, Biochim. Biophys. Acta 1209, 24-32.
    • (1994) Biochim. Biophys. Acta , vol.1209 , pp. 24-32
    • Yu, L.1    Fesik, S.W.2
  • 36
    • 0030608855 scopus 로고    scopus 로고
    • a values of the histidine side chains of phosphatidylinositol-specific phosholipase C from Bacillus cereus by NMR spectroscopy and site-directed mutagenesis
    • a values of the histidine side chains of phosphatidylinositol-specific phosholipase C from Bacillus cereus by NMR spectroscopy and site-directed mutagenesis, Protein Sci. 6, 1937-1944.
    • (1997) Protein Sci , vol.6 , pp. 1937-1944
    • Lui, T.1    Ryan, M.2    Dahlquist, F.W.3    Griffith, O.H.4
  • 38
    • 84985733652 scopus 로고
    • 1H-NMR parameters of the common amino acid residues measured in aqueous solutions of the linear tetrapeptides H-Gly-Gly-X-L-Ala-OH
    • 1H-NMR parameters of the common amino acid residues measured in aqueous solutions of the linear tetrapeptides H-Gly-Gly-X-L-Ala-OH, Biopolymers 18, 285-297.
    • (1979) Biopolymers , vol.18 , pp. 285-297
    • Bundi, A.1    Wüthrich, K.2
  • 39
    • 0018118592 scopus 로고
    • Carbon-13 NMR chemical shifts of the common amino acid residues measured in aqueous solutions of the linear tetrapeptides H-Gly-Gly-X-L-Ala-OH
    • Richarz, R., and Wuthrich, K. (1978) Carbon-13 NMR chemical shifts of the common amino acid residues measured in aqueous solutions of the linear tetrapeptides H-Gly-Gly-X-L-Ala-OH, Biopolymers 17, 2133-2141.
    • (1978) Biopolymers , vol.17 , pp. 2133-2141
    • Richarz, R.1    Wuthrich, K.2
  • 40
    • 33947094423 scopus 로고
    • N-15 nuclear magnetic-resonance spectroscopy: State of histidine in catalytic triad of α-lytic protease: Implications for charge-relay mechanism of peptide-bond cleavage by serine proteases
    • Bachovchin, W. W., and Roberts, J. D. (1978) N-15 nuclear magnetic-resonance spectroscopy: State of histidine in catalytic triad of α-lytic protease: Implications for charge-relay mechanism of peptide-bond cleavage by serine proteases, J. Am. Chem. Soc. 100, 8041-8047.
    • (1978) J. Am. Chem. Soc , vol.100 , pp. 8041-8047
    • Bachovchin, W.W.1    Roberts, J.D.2
  • 41
    • 0031283399 scopus 로고    scopus 로고
    • a values of the carboxyl and imidazole groups in Bacillus circulans xylanase
    • a values of the carboxyl and imidazole groups in Bacillus circulans xylanase, Protein Sci. 6, 2667-2670.
    • (1997) Protein Sci , vol.6 , pp. 2667-2670
    • Joshi, M.D.1    Hedberg, A.2    Mcintosh, L.P.3
  • 42
    • 0036783381 scopus 로고    scopus 로고
    • Variability in the pKa of histidine side-chains correlates with burial within proteins
    • Edgcomb, S. P., and Murphy, K. P. (2002) Variability in the pKa of histidine side-chains correlates with burial within proteins, Proteins 49, 1-6.
    • (2002) Proteins , vol.49 , pp. 1-6
    • Edgcomb, S.P.1    Murphy, K.P.2
  • 45
    • 0025234587 scopus 로고
    • pH-induced denaturation of proteins: A single salt bridge contributes 3-5 kcal/mol to the free energy of folding of T4 lysozyme
    • Anderson, D. E., Becktel, W. J., and Dahlquist, F. W. (1990) pH-induced denaturation of proteins: A single salt bridge contributes 3-5 kcal/mol to the free energy of folding of T4 lysozyme, Biochemistry 29, 2403-2408.
    • (1990) Biochemistry , vol.29 , pp. 2403-2408
    • Anderson, D.E.1    Becktel, W.J.2    Dahlquist, F.W.3
  • 46
    • 34250212548 scopus 로고    scopus 로고
    • Wicki, J., Schloegl, J., Tarling, C. A., and Withers, S. G. (2007) Recruitment of both uniform and differential binding energy in enzymatic catalysis: Xylanases from Families 10 and 11, Biochemistry (in press).
    • Wicki, J., Schloegl, J., Tarling, C. A., and Withers, S. G. (2007) Recruitment of both uniform and differential binding energy in enzymatic catalysis: Xylanases from Families 10 and 11, Biochemistry (in press).
  • 48
    • 0033599494 scopus 로고    scopus 로고
    • Lateral protonation of a glycosidase inhibitor. Structure of the Bacillus agaradhaerens Cel5A in complex with a cellobiose-derived imidazole at 0.97 Å resolution
    • Varrot, A., Schulein, M., Pipelier, M., Vasella, A., and Davies, G. J. (1999) Lateral protonation of a glycosidase inhibitor. Structure of the Bacillus agaradhaerens Cel5A in complex with a cellobiose-derived imidazole at 0.97 Å resolution, J. Am. Chem. Soc. 121, 2621-2622.
    • (1999) J. Am. Chem. Soc , vol.121 , pp. 2621-2622
    • Varrot, A.1    Schulein, M.2    Pipelier, M.3    Vasella, A.4    Davies, G.J.5
  • 50
    • 0344012180 scopus 로고    scopus 로고
    • Iminosugar glycosidase inhibitors: Structural and thermodynamic dissection of the binding of isofagomine and 1-deoxynojirimycin to β-glucosidases
    • Zechel, D. L., Boraston, A. B., Gloster, T., Boraston, C. M., Macdonald, J. M., Tilbrook, D. M. G., Stick, R. V., and Davies, G. J. (2003) Iminosugar glycosidase inhibitors: Structural and thermodynamic dissection of the binding of isofagomine and 1-deoxynojirimycin to β-glucosidases, J. Am. Chem. Soc. 125, 14313-14323.
    • (2003) J. Am. Chem. Soc , vol.125 , pp. 14313-14323
    • Zechel, D.L.1    Boraston, A.B.2    Gloster, T.3    Boraston, C.M.4    Macdonald, J.M.5    Tilbrook, D.M.G.6    Stick, R.V.7    Davies, G.J.8
  • 51
    • 2442442434 scopus 로고    scopus 로고
    • Long-range nature of the interactions between titratable groups in Bacillus agaradhaerens family 11 xylanase: PH titration of B. agaradhaerens xylanase
    • Betz, M., Lohr, F., Wienk, H., and Ruterjans, H. (2004) Long-range nature of the interactions between titratable groups in Bacillus agaradhaerens family 11 xylanase: pH titration of B. agaradhaerens xylanase, Biochemistry 43, 5820-5831.
    • (2004) Biochemistry , vol.43 , pp. 5820-5831
    • Betz, M.1    Lohr, F.2    Wienk, H.3    Ruterjans, H.4
  • 53
    • 0018793899 scopus 로고
    • Nuclear magnetic resonance study of solvent exchange and nuclear Overhauser effect of the histidine protons of bovine superoxide dismutase
    • Stoesz, J. D., Malinowski, D. P., and Redfield, A. G. (1979) Nuclear magnetic resonance study of solvent exchange and nuclear Overhauser effect of the histidine protons of bovine superoxide dismutase, Biochemistry 18, 4669-4675.
    • (1979) Biochemistry , vol.18 , pp. 4669-4675
    • Stoesz, J.D.1    Malinowski, D.P.2    Redfield, A.G.3
  • 55
    • 28644432877 scopus 로고    scopus 로고
    • Very fast empirical prediction and interpretation of protein pKa values
    • Li, H., Robertson, A. D., and Jensen, J. H. (2005) Very fast empirical prediction and interpretation of protein pKa values, Proteins 61, 704-721.
    • (2005) Proteins , vol.61 , pp. 704-721
    • Li, H.1    Robertson, A.D.2    Jensen, J.H.3
  • 56
    • 0000363078 scopus 로고
    • Direct observation of the tautomeric forms of histidine in N-15 NMR-spectra at low-temperatures: Comments on intramolecular hydrogen-bonding and on tautomeric equilibrium-constants
    • Farr-Jones, S., Wong, W. Y. L., Gutheil, W. G., and Bachovchin, W. W. (1993) Direct observation of the tautomeric forms of histidine in N-15 NMR-spectra at low-temperatures: Comments on intramolecular hydrogen-bonding and on tautomeric equilibrium-constants, J. Am. Chem. Soc. 115, 6813-6819.
    • (1993) J. Am. Chem. Soc , vol.115 , pp. 6813-6819
    • Farr-Jones, S.1    Wong, W.Y.L.2    Gutheil, W.G.3    Bachovchin, W.W.4
  • 57
    • 0035859793 scopus 로고    scopus 로고
    • A catalytic diad involved in substrate-assisted catalysis: NMR study of hydrogen bonding and dynamics at the active site of phosphatidylinositol-specific phospholipase C
    • Ryan, M., Liu, T., Dahlquist, F. W., and Griffith, O. H. (2001) A catalytic diad involved in substrate-assisted catalysis: NMR study of hydrogen bonding and dynamics at the active site of phosphatidylinositol-specific phospholipase C, Biochemistry 40, 9743-9750.
    • (2001) Biochemistry , vol.40 , pp. 9743-9750
    • Ryan, M.1    Liu, T.2    Dahlquist, F.W.3    Griffith, O.H.4
  • 58
    • 0034719145 scopus 로고    scopus 로고
    • NMR evidence for a short, strong hydrogen bond at the active site of a cholinesterase
    • Viragh, C., Harris, T. K., Reddy, P. M., Massiah, M. A., Mildvan, A. S., and Kovach, I. M. (2000) NMR evidence for a short, strong hydrogen bond at the active site of a cholinesterase, Biochemistry 39, 16200-16205.
    • (2000) Biochemistry , vol.39 , pp. 16200-16205
    • Viragh, C.1    Harris, T.K.2    Reddy, P.M.3    Massiah, M.A.4    Mildvan, A.S.5    Kovach, I.M.6
  • 59
  • 60
    • 0942298096 scopus 로고    scopus 로고
    • Observation of a short, strong hydrogen bond in the active site of hydroxynitrile lyase from Hevea brasiliensis explains a large pKa shift of the catalytic base induced by the reaction intermediate
    • Stranzl, G. R., Gruber, K., Steinkellner, G., Zangger, K., Schwab, H., and Kratky, C. (2004) Observation of a short, strong hydrogen bond in the active site of hydroxynitrile lyase from Hevea brasiliensis explains a large pKa shift of the catalytic base induced by the reaction intermediate, J. Biol. Chem. 279, 3699-3707.
    • (2004) J. Biol. Chem , vol.279 , pp. 3699-3707
    • Stranzl, G.R.1    Gruber, K.2    Steinkellner, G.3    Zangger, K.4    Schwab, H.5    Kratky, C.6
  • 61
    • 33746083605 scopus 로고    scopus 로고
    • Sub-angstrom crystallography reveals that short ionic hydrogen bonds, and not a His-Asp low-barrier hydrogen bond, stabilize the transition state in serine protease catalysis
    • Fuhrmann, C. N., Daugherty, M. D., and Agard, D. A. (2006) Sub-angstrom crystallography reveals that short ionic hydrogen bonds, and not a His-Asp low-barrier hydrogen bond, stabilize the transition state in serine protease catalysis, J. Am. Chem. Soc. 128, 9086-9102.
    • (2006) J. Am. Chem. Soc , vol.128 , pp. 9086-9102
    • Fuhrmann, C.N.1    Daugherty, M.D.2    Agard, D.A.3
  • 62
    • 0000741348 scopus 로고    scopus 로고
    • Strong hydrogen bonding in molecules and enzymatic complexes
    • Frey, P. A. (2001) Strong hydrogen bonding in molecules and enzymatic complexes, Magn. Reson. Chem. 39, S190-S198.
    • (2001) Magn. Reson. Chem , vol.39
    • Frey, P.A.1
  • 63
    • 2242447088 scopus 로고    scopus 로고
    • Quantum chemical calculations on structural models of the catalytic site of chymotrypsin: Comparison of calculated results with experimental data from NMR spectroscopy
    • Westler, W. M., Weinhold, F., and Markley, J. L. (2002) Quantum chemical calculations on structural models of the catalytic site of chymotrypsin: Comparison of calculated results with experimental data from NMR spectroscopy, J. Am. Chem. Soc. 124, 14373-14381.
    • (2002) J. Am. Chem. Soc , vol.124 , pp. 14373-14381
    • Westler, W.M.1    Weinhold, F.2    Markley, J.L.3
  • 64
    • 0038613083 scopus 로고    scopus 로고
    • NMR chemical shifts in the low-pH form of α-chymotrypsin. A QM/MM and ONIOM-NMR study
    • Molina, P. A., Sikorski, R. S., and Jensen, J. H. (2003) NMR chemical shifts in the low-pH form of α-chymotrypsin. A QM/MM and ONIOM-NMR study, Theor. Chem. Acc. 109, 100-107.
    • (2003) Theor. Chem. Acc , vol.109 , pp. 100-107
    • Molina, P.A.1    Sikorski, R.S.2    Jensen, J.H.3
  • 65
    • 0033620446 scopus 로고    scopus 로고
    • Identification of the hydrogen bonding network in a protein by scalar couplings
    • Cornilescu, G., Hu, J. S., and Bax, A. (1999) Identification of the hydrogen bonding network in a protein by scalar couplings, J. Am. Chem. Soc. 121, 2949-2950.
    • (1999) J. Am. Chem. Soc , vol.121 , pp. 2949-2950
    • Cornilescu, G.1    Hu, J.S.2    Bax, A.3
  • 66
    • 84961978653 scopus 로고    scopus 로고
    • Investigation of the NMR spin-spin coupling constants across the hydrogen bonds in ubiquitin: The nature of the hydrogen bond as reflected by the coupling mechanism
    • Tuttle, T., Kraka, E., Wu, A., and Cremer, D. (2004) Investigation of the NMR spin-spin coupling constants across the hydrogen bonds in ubiquitin: The nature of the hydrogen bond as reflected by the coupling mechanism, J. Am. Chem. Soc. 126, 5093-5107.
    • (2004) J. Am. Chem. Soc , vol.126 , pp. 5093-5107
    • Tuttle, T.1    Kraka, E.2    Wu, A.3    Cremer, D.4
  • 67
    • 0034794182 scopus 로고    scopus 로고
    • A DFT study of the interresidue dependencies of scalar J-coupling and magnetic shielding in the hydrogen-bonding regions of a DNA triplex
    • Barfield, M., Dingley, A. J., Feigon, J., and Grzesiek, S. (2001) A DFT study of the interresidue dependencies of scalar J-coupling and magnetic shielding in the hydrogen-bonding regions of a DNA triplex, J. Am. Chem. Soc. 123, 4014-4022.
    • (2001) J. Am. Chem. Soc , vol.123 , pp. 4014-4022
    • Barfield, M.1    Dingley, A.J.2    Feigon, J.3    Grzesiek, S.4
  • 69
    • 0033618071 scopus 로고    scopus 로고
    • Internucleotide scalar couplings across hydrogen bonds in Watson-Crick and Hoogsteen base pairs of a DNA triplex
    • Dingley, A. J., Masse, J. E., Peterson, R. D., Barfield, M., Feigon, J., and Grzesiek, S. (1999) Internucleotide scalar couplings across hydrogen bonds in Watson-Crick and Hoogsteen base pairs of a DNA triplex, J. Am. Chem. Soc. 121, 6019-6027.
    • (1999) J. Am. Chem. Soc , vol.121 , pp. 6019-6027
    • Dingley, A.J.1    Masse, J.E.2    Peterson, R.D.3    Barfield, M.4    Feigon, J.5    Grzesiek, S.6
  • 70
    • 0029881007 scopus 로고    scopus 로고
    • MOLMOL: A program for display and analysis of macromolecular structures
    • Koradi, R., Billeter, M., and Wüthrich, K. (1996) MOLMOL: A program for display and analysis of macromolecular structures, J. Mol. Graphics 14, 51-55, 29-32.
    • (1996) J. Mol. Graphics , vol.14
    • Koradi, R.1    Billeter, M.2    Wüthrich, K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.