-
1
-
-
0030014783
-
DNA topoisomerases
-
Wang J.C. DNA topoisomerases. Annu. Rev. Biochem. 65 (1996) 635-692
-
(1996)
Annu. Rev. Biochem.
, vol.65
, pp. 635-692
-
-
Wang, J.C.1
-
2
-
-
0002420639
-
Mechanistic Aspects of Type-I Topoisomerases
-
Wang J.C., and Cozzarelli N.R. (Eds), Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
Champoux J.J. Mechanistic Aspects of Type-I Topoisomerases. In: Wang J.C., and Cozzarelli N.R. (Eds). DNA Topology and its Biological Effects (1990), Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 217-242
-
(1990)
DNA Topology and its Biological Effects
, pp. 217-242
-
-
Champoux, J.J.1
-
3
-
-
0001852778
-
Mammalian DNA Topoisomerase I and its Inhibtors
-
Hickman J., and Tritton T. (Eds), Blackwell Scientific Publications, Oxford
-
Pommier Y., and Tanizawa A. Mammalian DNA Topoisomerase I and its Inhibtors. In: Hickman J., and Tritton T. (Eds). Cancer Therapy (1993), Blackwell Scientific Publications, Oxford 214-250
-
(1993)
Cancer Therapy
, pp. 214-250
-
-
Pommier, Y.1
Tanizawa, A.2
-
4
-
-
0028174984
-
DNA topoisomerases: essential enzymes and lethal targets, Annu
-
Chen A.Y., and Liu L.F. DNA topoisomerases: essential enzymes and lethal targets, Annu. Rev. Pharmacol. Toxicol. 34 (1994) 191-218
-
(1994)
Rev. Pharmacol. Toxicol.
, vol.34
, pp. 191-218
-
-
Chen, A.Y.1
Liu, L.F.2
-
5
-
-
0031006668
-
Vaccinia DNA topoisomerase I: evidence supporting a free rotation mechanism for DNA supercoil relaxation
-
Stivers J.T., Harris T.K., and Mildvan A.S. Vaccinia DNA topoisomerase I: evidence supporting a free rotation mechanism for DNA supercoil relaxation. Biochemistry 36 (1997) 5212-5222
-
(1997)
Biochemistry
, vol.36
, pp. 5212-5222
-
-
Stivers, J.T.1
Harris, T.K.2
Mildvan, A.S.3
-
6
-
-
0032489675
-
A model for the mechanism of human topoisomerase I
-
Stewart L., Redinbo M.R., Qiu X., Hol W.G., and Champoux J.J. A model for the mechanism of human topoisomerase I. Science 279 (1998) 1534-1541
-
(1998)
Science
, vol.279
, pp. 1534-1541
-
-
Stewart, L.1
Redinbo, M.R.2
Qiu, X.3
Hol, W.G.4
Champoux, J.J.5
-
7
-
-
0019888076
-
DNA is linked to the rat liver DNA nicking-closing enzyme by a phosphodiester bond to tyrosine
-
Champoux J.J. DNA is linked to the rat liver DNA nicking-closing enzyme by a phosphodiester bond to tyrosine. J. Biol. Chem. 256 (1981) 4805-4809
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 4805-4809
-
-
Champoux, J.J.1
-
8
-
-
0032489634
-
Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA
-
Redinbo M.R., Stewart L., Kuhn P., Champoux J.J., and Hol W.G. Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA. Science 279 (1998) 1504-1513
-
(1998)
Science
, vol.279
, pp. 1504-1513
-
-
Redinbo, M.R.1
Stewart, L.2
Kuhn, P.3
Champoux, J.J.4
Hol, W.G.5
-
9
-
-
0000734623
-
Structural flexibility in human topoisomerase I revealed in multiple non-isomorphous crystal structures
-
Redinbo M.R., Stewart L., Champoux J.J., and Hol W.G. Structural flexibility in human topoisomerase I revealed in multiple non-isomorphous crystal structures. J. Mol. Biol. 292 (1999) 685-696
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 685-696
-
-
Redinbo, M.R.1
Stewart, L.2
Champoux, J.J.3
Hol, W.G.4
-
10
-
-
0034643810
-
Novel insights into catalytic mechanism from a crystal structure of human topoisomerase I in complex with DNA
-
Redinbo M.R., Champoux J.J., and Hol W.G. Novel insights into catalytic mechanism from a crystal structure of human topoisomerase I in complex with DNA. Biochemistry 39 (2000) 6832-6840
-
(2000)
Biochemistry
, vol.39
, pp. 6832-6840
-
-
Redinbo, M.R.1
Champoux, J.J.2
Hol, W.G.3
-
11
-
-
1642453632
-
The role of lysine 532 in the catalytic mechanism of human topoisomerase I
-
Interthal H., Quigley P.M., Hol W.G., and Champoux J.J. The role of lysine 532 in the catalytic mechanism of human topoisomerase I. J. Biol. Chem. 279 (2004) 2984-2992
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 2984-2992
-
-
Interthal, H.1
Quigley, P.M.2
Hol, W.G.3
Champoux, J.J.4
-
12
-
-
0033634688
-
Catalytic mechanism of DNA topoisomerase IB
-
Krogh B.O., and Shuman S. Catalytic mechanism of DNA topoisomerase IB. Mol. Cell. 5 (2000) 1035-1041
-
(2000)
Mol. Cell.
, vol.5
, pp. 1035-1041
-
-
Krogh, B.O.1
Shuman, S.2
-
13
-
-
0034923502
-
DNA topoisomerases: structure, function, and mechanism
-
Champoux J.J. DNA topoisomerases: structure, function, and mechanism. Annu. Rev. Biochem. 70 (2001) 369-413
-
(2001)
Annu. Rev. Biochem.
, vol.70
, pp. 369-413
-
-
Champoux, J.J.1
-
15
-
-
0032549763
-
Conservation of structure and mechanism between eukaryotic topoisomerase I and site-specific recombinases
-
Cheng C., Kussie P., Pavletich N., and Shuman S. Conservation of structure and mechanism between eukaryotic topoisomerase I and site-specific recombinases. Cell 92 (1998) 841-850
-
(1998)
Cell
, vol.92
, pp. 841-850
-
-
Cheng, C.1
Kussie, P.2
Pavletich, N.3
Shuman, S.4
-
17
-
-
0037180432
-
The mechanism of topoisomerase I poisoning by a camptothecin analog
-
Staker B.L., Hjerrild K., Feese M.D., Behnke C.A., Burgin Jr. A.B., and Stewart L. The mechanism of topoisomerase I poisoning by a camptothecin analog. Proc. Natl. Acad Sci. USA 99 (2002) 15387-15392
-
(2002)
Proc. Natl. Acad Sci. USA
, vol.99
, pp. 15387-15392
-
-
Staker, B.L.1
Hjerrild, K.2
Feese, M.D.3
Behnke, C.A.4
Burgin Jr., A.B.5
Stewart, L.6
-
18
-
-
0026425817
-
Mg2+, Asp-, and Glu-effects in the processive and distributive DNA relaxation catalyzed by a eukaryotic topoisomerase
-
Der Garabedian P.A., Mirambeau G., and Vermeersch J.J. Mg2+, Asp-, and Glu-effects in the processive and distributive DNA relaxation catalyzed by a eukaryotic topoisomerase. Biochemistry 30 (1991) 9940-9947
-
(1991)
Biochemistry
, vol.30
, pp. 9940-9947
-
-
Der Garabedian, P.A.1
Mirambeau, G.2
Vermeersch, J.J.3
-
19
-
-
0037155171
-
Proton relay mechanism of general acid catalysis by DNA topoisomerase IB
-
Krogh B.O., and Shuman S. Proton relay mechanism of general acid catalysis by DNA topoisomerase IB. J. Biol. Chem. 277 (2002) 5711-5714
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 5711-5714
-
-
Krogh, B.O.1
Shuman, S.2
-
20
-
-
0032033603
-
Diversity of DNA topoisomerases I and inhibitors
-
Pommier Y. Diversity of DNA topoisomerases I and inhibitors. Biochimie 80 (1998) 255-270
-
(1998)
Biochimie
, vol.80
, pp. 255-270
-
-
Pommier, Y.1
-
21
-
-
0034040082
-
Topoisomerase I poisons and suppressors as anticancer drugs
-
Bailly C. Topoisomerase I poisons and suppressors as anticancer drugs. Curr. Med. Chem. 7 (2000) 39-58
-
(2000)
Curr. Med. Chem.
, vol.7
, pp. 39-58
-
-
Bailly, C.1
-
22
-
-
0036244606
-
F 11782, a novel catalytic inhibitor of topoisomerases I and II, induces atypical, yet cytotoxic DNA double-strand breaks in CHO-K1 cells
-
Barret J.M., Etievant C., Baudouin C., Skov K., Charveron M., and Hill B.T. F 11782, a novel catalytic inhibitor of topoisomerases I and II, induces atypical, yet cytotoxic DNA double-strand breaks in CHO-K1 cells. Anticancer Res. 22 (2002) 187-192
-
(2002)
Anticancer Res.
, vol.22
, pp. 187-192
-
-
Barret, J.M.1
Etievant, C.2
Baudouin, C.3
Skov, K.4
Charveron, M.5
Hill, B.T.6
-
23
-
-
34247325971
-
Vitamin B6 as an Inhibitor of Eukaryotic DNA Topoisomerase I
-
Fukui T., Kagamiyama H., Soda K., and Wada H. (Eds), Pergamon Press, Oxford/New York
-
Der Garabedian P.A., and Vermeersch J.J. Vitamin B6 as an Inhibitor of Eukaryotic DNA Topoisomerase I. In: Fukui T., Kagamiyama H., Soda K., and Wada H. (Eds). Enzymes dependent on pyridoxal phosphate and other carbonyl compounds as cofactors (1991), Pergamon Press, Oxford/New York 597-600
-
(1991)
Enzymes dependent on pyridoxal phosphate and other carbonyl compounds as cofactors
, pp. 597-600
-
-
Der Garabedian, P.A.1
Vermeersch, J.J.2
-
24
-
-
6944232331
-
Pyridoxal 5′-phosphate inactivates DNA topoisomerase IB by modifying the lysine general acid
-
Vermeersch J.J., Christmann-Franck S., Karabashyan L.V., Fermandjian S., Mirambeau G., and Der Garabedian P.A. Pyridoxal 5′-phosphate inactivates DNA topoisomerase IB by modifying the lysine general acid. Nucleic Acids Res. 32 (2004) 5649-5657
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 5649-5657
-
-
Vermeersch, J.J.1
Christmann-Franck, S.2
Karabashyan, L.V.3
Fermandjian, S.4
Mirambeau, G.5
Der Garabedian, P.A.6
-
25
-
-
0033649909
-
The molecular evolution of pyridoxal-5′-phosphate-dependent enzymes
-
Mehta P.K., and Christen P. The molecular evolution of pyridoxal-5′-phosphate-dependent enzymes. Adv. Enzymol. Relat. Areas Mol. Biol. 74 (2000) 129-184
-
(2000)
Adv. Enzymol. Relat. Areas Mol. Biol.
, vol.74
, pp. 129-184
-
-
Mehta, P.K.1
Christen, P.2
-
26
-
-
0023754149
-
Affinity labeling the DNA polymerase alpha complex. I. Pyridoxal 5′-phosphate inhibition of DNA polymerase and DNA primase activities of the DNA polymerase alpha complex from Drosophila melanogaster embryos
-
Diffley J.F. Affinity labeling the DNA polymerase alpha complex. I. Pyridoxal 5′-phosphate inhibition of DNA polymerase and DNA primase activities of the DNA polymerase alpha complex from Drosophila melanogaster embryos. J. Biol. Chem. 263 (1988) 14669-14677
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 14669-14677
-
-
Diffley, J.F.1
-
27
-
-
0024237432
-
Affinity labeling the DNA polymerase alpha complex. Identification of subunits containing the DNA polymerase active site and an important regulatory nucleotide-binding site
-
Diffley J.F. Affinity labeling the DNA polymerase alpha complex. Identification of subunits containing the DNA polymerase active site and an important regulatory nucleotide-binding site. J. Biol. Chem. 263 (1988) 19126-19131
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 19126-19131
-
-
Diffley, J.F.1
-
28
-
-
0017169321
-
Observations on the pyridoxal 5′-phosphate inhibition of DNA polymerases
-
Modak M.J. Observations on the pyridoxal 5′-phosphate inhibition of DNA polymerases. Biochemistry 15 (1976) 3620-3626
-
(1976)
Biochemistry
, vol.15
, pp. 3620-3626
-
-
Modak, M.J.1
-
29
-
-
0023125846
-
Identification and amino acid sequence of the deoxynucleoside triphosphate binding site in Escherichia coli DNA polymerase I
-
Basu A., and Modak M.J. Identification and amino acid sequence of the deoxynucleoside triphosphate binding site in Escherichia coli DNA polymerase I. Biochemistry 26 (1987) 1704-1709
-
(1987)
Biochemistry
, vol.26
, pp. 1704-1709
-
-
Basu, A.1
Modak, M.J.2
-
30
-
-
0016746784
-
Inactivation of E. coli RNA polymerase by pyridoxal 5′-phosphate: identification of a low pKa lysine as the modified residue
-
Bull P., Zaldivar J., Venegas A., Martial J., and Valenzuela P. Inactivation of E. coli RNA polymerase by pyridoxal 5′-phosphate: identification of a low pKa lysine as the modified residue. Biochem. Biophys. Res. Commun. 64 (1975) 1152-1159
-
(1975)
Biochem. Biophys. Res. Commun.
, vol.64
, pp. 1152-1159
-
-
Bull, P.1
Zaldivar, J.2
Venegas, A.3
Martial, J.4
Valenzuela, P.5
-
31
-
-
0015733337
-
Active site-directed inhibition of E. coli DNA-dependent RNA polymerase by pyridoxal 5′-phosphate
-
Venegas A., Martial J., and Valenzuela P. Active site-directed inhibition of E. coli DNA-dependent RNA polymerase by pyridoxal 5′-phosphate. Biochem. Biophys. Res. Commun. 55 (1973) 1053-1059
-
(1973)
Biochem. Biophys. Res. Commun.
, vol.55
, pp. 1053-1059
-
-
Venegas, A.1
Martial, J.2
Valenzuela, P.3
-
32
-
-
0016589998
-
Inactivation of rat liver RNA polymerases I and II and yeast RNA polymerase I by pyrodixal 5′-phosphate. Evidence for the participation of lysyl residues at the active site
-
Martial J., Zaldivar J., Bull P., Venegas A., and Valenzuela P. Inactivation of rat liver RNA polymerases I and II and yeast RNA polymerase I by pyrodixal 5′-phosphate. Evidence for the participation of lysyl residues at the active site. Biochemistry 14 (1975) 4907-4911
-
(1975)
Biochemistry
, vol.14
, pp. 4907-4911
-
-
Martial, J.1
Zaldivar, J.2
Bull, P.3
Venegas, A.4
Valenzuela, P.5
-
33
-
-
0024324362
-
Substrate binding in human immunodeficiency virus reverse transcriptase. An analysis of pyridoxal 5′-phosphate sensitivity and identification of lysine 263 in the substrate-binding domain
-
Basu A., Tirumalai R.S., and Modak M.J. Substrate binding in human immunodeficiency virus reverse transcriptase. An analysis of pyridoxal 5′-phosphate sensitivity and identification of lysine 263 in the substrate-binding domain. J. Biol. Chem. 264 (1989) 8746-8752
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 8746-8752
-
-
Basu, A.1
Tirumalai, R.S.2
Modak, M.J.3
-
34
-
-
20044386480
-
Mass spectrometric analysis of the HIV-1 integrase-pyridoxal 5′-phosphate complex reveals a new binding site for a nucleotide inhibitor
-
Williams K.L., Zhang Y., Shkriabai N., Karki R.G., Nicklaus M.C., Kotrikadze N., Hess S., Le Grice S.F., Craigie R., Pathak V.K., and Kvaratskhelia M. Mass spectrometric analysis of the HIV-1 integrase-pyridoxal 5′-phosphate complex reveals a new binding site for a nucleotide inhibitor. J. Biol. Chem. 280 (2005) 7949-7955
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 7949-7955
-
-
Williams, K.L.1
Zhang, Y.2
Shkriabai, N.3
Karki, R.G.4
Nicklaus, M.C.5
Kotrikadze, N.6
Hess, S.7
Le Grice, S.F.8
Craigie, R.9
Pathak, V.K.10
Kvaratskhelia, M.11
-
35
-
-
1542704057
-
Inhibitory effect of pyridoxal 5′-phosphate on endothelial cell proliferation, replicative DNA polymerase and DNA topoisomerase
-
Matsubara K., Matsumoto H., Mizushina Y., Lee J.S., and Kato N. Inhibitory effect of pyridoxal 5′-phosphate on endothelial cell proliferation, replicative DNA polymerase and DNA topoisomerase. Int. J. Mol. Med. 12 (2003) 51-55
-
(2003)
Int. J. Mol. Med.
, vol.12
, pp. 51-55
-
-
Matsubara, K.1
Matsumoto, H.2
Mizushina, Y.3
Lee, J.S.4
Kato, N.5
-
37
-
-
0344495342
-
Pyridoxal 5′-phosphate is a selective inhibitor in vivo of DNA polymerase alpha and epsilon
-
Mizushina Y., Xu X., Matsubara K., Murakami C., Kuriyama I., Oshige M., Takemura M., Kato N., Yoshida H., and Sakaguchi K. Pyridoxal 5′-phosphate is a selective inhibitor in vivo of DNA polymerase alpha and epsilon. Biochem. Biophys. Res. Commun. 312 (2003) 1025-1032
-
(2003)
Biochem. Biophys. Res. Commun.
, vol.312
, pp. 1025-1032
-
-
Mizushina, Y.1
Xu, X.2
Matsubara, K.3
Murakami, C.4
Kuriyama, I.5
Oshige, M.6
Takemura, M.7
Kato, N.8
Yoshida, H.9
Sakaguchi, K.10
-
38
-
-
0023155210
-
Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes
-
Ponder J.W., and Richards F.M. Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes. J. Mol. Biol. 193 (1987) 775-791
-
(1987)
J. Mol. Biol.
, vol.193
, pp. 775-791
-
-
Ponder, J.W.1
Richards, F.M.2
-
39
-
-
34247335815
-
-
Accelrys/Molecular Simulations Inc., San Diego, CA. .
-
-
-
-
40
-
-
0031032448
-
Determination of the structure of alanine racemase from Bacillus stearothermophilus at 1.9-A resolution
-
Shaw J.P., Petsko G.A., and Ringe D. Determination of the structure of alanine racemase from Bacillus stearothermophilus at 1.9-A resolution. Biochemistry 36 (1997) 1329-1342
-
(1997)
Biochemistry
, vol.36
, pp. 1329-1342
-
-
Shaw, J.P.1
Petsko, G.A.2
Ringe, D.3
-
41
-
-
0026033985
-
Structural mechanism for glycogen phosphorylase control by phosphorylation and AMP
-
Barford D., Hu S.H., and Johnson L.N. Structural mechanism for glycogen phosphorylase control by phosphorylation and AMP. J. Mol. Biol. 218 (1991) 233-260
-
(1991)
J. Mol. Biol.
, vol.218
, pp. 233-260
-
-
Barford, D.1
Hu, S.H.2
Johnson, L.N.3
-
42
-
-
0035901517
-
Structures of Escherichia coli histidinol-phosphate aminotransferase and its complexes with histidinol-phosphate and N-(5′-phosphopyridoxyl)-L-glutamate: double substrate recognition of the enzyme
-
Haruyama K., Nakai T., Miyahara I., Hirotsu K., Mizuguchi H., Hayashi H., and Kagamiyama H. Structures of Escherichia coli histidinol-phosphate aminotransferase and its complexes with histidinol-phosphate and N-(5′-phosphopyridoxyl)-L-glutamate: double substrate recognition of the enzyme. Biochemistry 40 (2001) 4633-4644
-
(2001)
Biochemistry
, vol.40
, pp. 4633-4644
-
-
Haruyama, K.1
Nakai, T.2
Miyahara, I.3
Hirotsu, K.4
Mizuguchi, H.5
Hayashi, H.6
Kagamiyama, H.7
-
43
-
-
0033515109
-
Structural basis of the tight binding of pyridoxal 5′-phosphate to a low molecular weight protein tyrosine phosphatase
-
Zhou M., and Van Etten R.L. Structural basis of the tight binding of pyridoxal 5′-phosphate to a low molecular weight protein tyrosine phosphatase. Biochemistry 38 (1999) 2636-2646
-
(1999)
Biochemistry
, vol.38
, pp. 2636-2646
-
-
Zhou, M.1
Van Etten, R.L.2
-
44
-
-
0032570641
-
Crystal structure of tryptophanase
-
Isupov M.N., Antson A.A., Dodson E.J., Dodson G.G., Dementieva I.S., Zakomirdina L.N., Wilson K.S., Dauter Z., Lebedev A.A., and Harutyunyan E.H. Crystal structure of tryptophanase. J. Mol. Biol. 276 (1998) 603-623
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 603-623
-
-
Isupov, M.N.1
Antson, A.A.2
Dodson, E.J.3
Dodson, G.G.4
Dementieva, I.S.5
Zakomirdina, L.N.6
Wilson, K.S.7
Dauter, Z.8
Lebedev, A.A.9
Harutyunyan, E.H.10
-
45
-
-
0344702740
-
Locking the DNA topoisomerase I protein clamp inhibits DNA rotation and induces cell lethality
-
Woo M.H., Losasso C., Guo H., Pattarello L., Benedetti P., and Bjornsti M.A. Locking the DNA topoisomerase I protein clamp inhibits DNA rotation and induces cell lethality. Proc. Natl. Acad. Sci. USA 100 (2003) 13767-13772
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 13767-13772
-
-
Woo, M.H.1
Losasso, C.2
Guo, H.3
Pattarello, L.4
Benedetti, P.5
Bjornsti, M.A.6
-
46
-
-
1442351132
-
Protein flexibility in ligand docking and virtual screening to protein kinases
-
Cavasotto C.N., and Abagyan R.A. Protein flexibility in ligand docking and virtual screening to protein kinases. J. Mol. Biol. 337 (2004) 209-225
-
(2004)
J. Mol. Biol.
, vol.337
, pp. 209-225
-
-
Cavasotto, C.N.1
Abagyan, R.A.2
|