메뉴 건너뛰기




Volumn 292, Issue 3, 1999, Pages 685-696

Structural flexibility in human topoisomerase I revealed in multiple non-isomorphous crystal structures

Author keywords

Non isomorphism; Protein DNA complex; Topoisomerase; X ray crystallography

Indexed keywords

DNA; DNA TOPOISOMERASE;

EID: 0000734623     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1999.3065     Document Type: Article
Times cited : (75)

References (25)
  • 1
    • 0022423193 scopus 로고
    • Topoisomerase I has a strong binding preference for a conserved hexadecameric sequence in the promoter region of the rRNA gene from Tetrahymena pyriformis
    • Andersen A. H., Gocke E., Bonven B. J., Nielsen O. F., Westergaard O. Topoisomerase I has a strong binding preference for a conserved hexadecameric sequence in the promoter region of the rRNA gene from Tetrahymena pyriformis. Nucl. Acids Res. 13:1985;1543-1557.
    • (1985) Nucl. Acids Res. , vol.13 , pp. 1543-1557
    • Andersen, A.H.1    Gocke, E.2    Bonven, B.J.3    Nielsen, O.F.4    Westergaard, O.5
  • 2
    • 0000913086 scopus 로고
    • A fast algorithm for rendering space-filling molcule pictures
    • Bacon D. J., Anderson W. F. A fast algorithm for rendering space-filling molcule pictures. J. Mol. Graph. 6:1988;219-220.
    • (1988) J. Mol. Graph. , vol.6 , pp. 219-220
    • Bacon, D.J.1    Anderson, W.F.2
  • 3
    • 0032189653 scopus 로고    scopus 로고
    • Structure of DNA topoisomerases
    • Berger J. M. Structure of DNA topoisomerases. Biochim. Biophys. Acta. 1400:1998;3-18.
    • (1998) Biochim. Biophys. Acta , vol.1400 , pp. 3-18
    • Berger, J.M.1
  • 5
    • 0002420639 scopus 로고
    • Mechanistic aspects of type-I topoisomerases
    • J.C. Wang, & N.R. Cozzarelli. Cold Spring Harbor: Cold Spring Harbor Laboratory Press
    • Champoux J. J. Mechanistic aspects of type-I topoisomerases. Wang J. C., Cozzarelli N. R. DNA Topology and Its Biological Effects. 1990;217-242 Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
    • (1990) DNA Topology and Its Biological Effects , pp. 217-242
    • Champoux, J.J.1
  • 6
    • 0032549763 scopus 로고    scopus 로고
    • Conservation of structure and mechanism between eukaryotic topoisomerase I and site-specific recombinases
    • Cheng C., Kussie P., Pavletich N., Shuman S. Conservation of structure and mechanism between eukaryotic topoisomerase I and site-specific recombinases. Cell. 92:1998;841-850.
    • (1998) Cell , vol.92 , pp. 841-850
    • Cheng, C.1    Kussie, P.2    Pavletich, N.3    Shuman, S.4
  • 7
    • 0030816550 scopus 로고    scopus 로고
    • The integrase family of tyrosine recombinases: Evolution of a conserved active site domain
    • Esposito D., Scocca J. J. The integrase family of tyrosine recombinases: evolution of a conserved active site domain. Nucl. Acids Res. 25:1997;3605-3614.
    • (1997) Nucl. Acids Res. , vol.25 , pp. 3605-3614
    • Esposito, D.1    Scocca, J.J.2
  • 8
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones T. A., Zou J.-Y., Cowan S. W., Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallog. sect. A. 47:1991;110-119.
    • (1991) Acta Crystallog. Sect. a , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.-Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 9
    • 84893482610 scopus 로고
    • A solution for the best rotation to relate two sets of vectors
    • Kabsch W. A solution for the best rotation to relate two sets of vectors. Acta Crystallog. sect. A. 32:1976;922-923.
    • (1976) Acta Crystallog. Sect. a , vol.32 , pp. 922-923
    • Kabsch, W.1
  • 10
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
    • Kraulis P. J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallog. 24:1991;946-950.
    • (1991) J. Appl. Crystallog. , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 11
    • 0028115776 scopus 로고
    • Three-dimensional structure of the 67 k N-terminal fragment of E. coli DNA topoisomerase I
    • Lima C. D., Wang J. C., Mondragon A. Three-dimensional structure of the 67 k N-terminal fragment of E. coli DNA topoisomerase I. Nature. 367:1994;138-146.
    • (1994) Nature , vol.367 , pp. 138-146
    • Lima, C.D.1    Wang, J.C.2    Mondragon, A.3
  • 12
    • 0029646088 scopus 로고
    • A 26 kDa yeast DNA topoisomerase I fragment: Crystallographic structure and mechanistic implications
    • Lue N., Sharma A., Mondragon A., Wang J. C. A 26 kDa yeast DNA topoisomerase I fragment: crystallographic structure and mechanistic implications. Structure. 3:1995;1315-1322.
    • (1995) Structure , vol.3 , pp. 1315-1322
    • Lue, N.1    Sharma, A.2    Mondragon, A.3    Wang, J.C.4
  • 13
    • 0014432781 scopus 로고
    • Solvent content of protein crystals
    • Matthews B. W. Solvent content of protein crystals. J. Mol. Biol. 33:1968;491-497.
    • (1968) J. Mol. Biol. , vol.33 , pp. 491-497
    • Matthews, B.W.1
  • 14
    • 0028057108 scopus 로고
    • Raster3D version 2.0. a program for photorealistic molecular graphics
    • Merritt E. A., Murphy M. E. P. Raster3D version 2.0. a program for photorealistic molecular graphics. Acta Crystallog. sect. D. 50:1994;869-873.
    • (1994) Acta Crystallog. Sect. D , vol.50 , pp. 869-873
    • Merritt, E.A.1    Murphy, M.E.P.2
  • 15
    • 84920325457 scopus 로고
    • AMoRe: An automated package for molecular replacement
    • Navaza J. AMoRe: an automated package for molecular replacement. Acta Crystallog. sect. A. 50:1994;157-163.
    • (1994) Acta Crystallog. Sect. a , vol.50 , pp. 157-163
    • Navaza, J.1
  • 17
    • 0032489634 scopus 로고    scopus 로고
    • Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA
    • Redinbo M. R., Stewart L., Kuhn P., Champoux J. J., Hol W. G. J. Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA. Science. 279:1998;1504-1513.
    • (1998) Science , vol.279 , pp. 1504-1513
    • Redinbo, M.R.1    Stewart, L.2    Kuhn, P.3    Champoux, J.J.4    Hol, W.G.J.5
  • 18
  • 19
    • 0028774040 scopus 로고
    • Crystal structure of the amino-terminal fragment of vaccinia virus DNA topoisomerase I at 1.6 A resolution
    • Sharma A., Hanai R., Mondragon A. Crystal structure of the amino-terminal fragment of vaccinia virus DNA topoisomerase I at 1.6 A resolution. Structure. 2:1994;767-777.
    • (1994) Structure , vol.2 , pp. 767-777
    • Sharma, A.1    Hanai, R.2    Mondragon, A.3
  • 20
    • 0029986467 scopus 로고    scopus 로고
    • Biochemical and biophysical analyses of recombinant forms of human topoisomerase I
    • Stewart L., Ireton G. C., Parker L. H., Madden K. R., Champoux J. J. Biochemical and biophysical analyses of recombinant forms of human topoisomerase I. J. Biol. Chem. 271:1996a;7593-7601.
    • (1996) J. Biol. Chem. , vol.271 , pp. 7593-7601
    • Stewart, L.1    Ireton, G.C.2    Parker, L.H.3    Madden, K.R.4    Champoux, J.J.5
  • 21
    • 0029869828 scopus 로고    scopus 로고
    • The domain organization of human topoisomerase I
    • Stewart L., Ireton G. C., Champoux J. J. The domain organization of human topoisomerase I. J. Biol. Chem. 271:1996b;7602-7608.
    • (1996) J. Biol. Chem. , vol.271 , pp. 7602-7608
    • Stewart, L.1    Ireton, G.C.2    Champoux, J.J.3
  • 22
    • 0031566428 scopus 로고    scopus 로고
    • Reconstitution of human topoisomerase I by fragment complementation
    • Stewart L., Ireton G. C., Champoux J. J. Reconstitution of human topoisomerase I by fragment complementation. J. Mol. Biol. 269:1997;355-372.
    • (1997) J. Mol. Biol. , vol.269 , pp. 355-372
    • Stewart, L.1    Ireton, G.C.2    Champoux, J.J.3
  • 24
    • 0030014783 scopus 로고    scopus 로고
    • DNA topoisomerases
    • Wang J. C. DNA topoisomerases. Annu. Rev. Biochem. 65:1996;635-692.
    • (1996) Annu. Rev. Biochem. , vol.65 , pp. 635-692
    • Wang, J.C.1
  • 25
    • 0029078107 scopus 로고
    • Solution structure of the C-terminal single-stranded DNA-binding domain of Eschericia coli topoisomerase I
    • Yu L., Zhu C.-X., Tse-Dinh Y.-C., Fesik S. W. Solution structure of the C-terminal single-stranded DNA-binding domain of Eschericia coli topoisomerase I. Biochemistry. 34:1995;7622-7628.
    • (1995) Biochemistry , vol.34 , pp. 7622-7628
    • Yu, L.1    Zhu, C.-X.2    Tse-Dinh, Y.-C.3    Fesik, S.W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.